mRNA_H-elongata_contig8671.16231.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8671.16231.1
Unique NamemRNA_H-elongata_contig8671.16231.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8671.16231.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.080e-31
Identity = 70/122 (57.38%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:    4 WHTRKTHSSPDRKLT--TKTGSMTSLLHGVCWHRVVAEGAQILANPRSARATAVDSLVGGARWCMVDRESMLTVESASERMRGLAAFVGIPSEVPLVDAAECLFYDSRPRHIVPSPHRGPAA 363
            W TR       ++ +  +KT  M SLLHGV W RVVA+GAQILA  RSARA A  +L+G ARWC+VD ESM  VE ASERMR LAAF+ +P+ VPLV+ AE L + SRPRHI P   R P A
Sbjct: 1253 WRTRNAKEGGQKRTSASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMGTARWCLVDCESMSIVEDASERMRCLAAFLRVPAAVPLVEVAESLLFRSRPRHIAPLYPRAPGA 1374
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BLAST of mRNA_H-elongata_contig8671.16231.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.300e-28
Identity = 67/117 (57.26%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:   55 TGSMTSLLHGVCWHRVVAEGAQILANPRSARATAVDSLVGGARWCMVDRESMLTVESASERMRG--------------LAAFVGIPSEVPLVDAAECLFYDSRPRHIVPSPHRGPAA 363
            T  M SLLHGV W RVVA+GAQILA  RSARA A  +L G ARWC+VD ESM  VE AS+RMR               LAAF+ +P+ VPLVD AE LF+ SRPRHI P   R P A
Sbjct: 1271 TDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAGTARWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAPLYPRAPGA 1387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8671.16231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB47_ECTSI3.080e-3157.38SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE5.300e-2857.26SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8671contigH-elongata_contig8671:8639..9738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSNF2-related helicase domain protein
Ec32 orthologEc-27_005250.1
Exons3
Model size363
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8671.16231.1prot_H-elongata_contig8671.16231.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8671 8639..9738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931268.3925817-CDS-H-elongata_contig8671:8638..87581622931268.3925817-CDS-H-elongata_contig8671:8638..8758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 8639..8758 -
1691679766.8294604-CDS-H-elongata_contig8671:8638..87581691679766.8294604-CDS-H-elongata_contig8671:8638..8758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 8639..8758 -
1622931268.4080637-CDS-H-elongata_contig8671:9061..92201622931268.4080637-CDS-H-elongata_contig8671:9061..9220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 9062..9220 -
1691679766.8391726-CDS-H-elongata_contig8671:9061..92201691679766.8391726-CDS-H-elongata_contig8671:9061..9220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 9062..9220 -
1622931268.423691-CDS-H-elongata_contig8671:9654..97381622931268.423691-CDS-H-elongata_contig8671:9654..9738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 9655..9738 -
1691679766.8484285-CDS-H-elongata_contig8671:9654..97381691679766.8484285-CDS-H-elongata_contig8671:9654..9738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 9655..9738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8671.16231.1

>prot_H-elongata_contig8671.16231.1 ID=prot_H-elongata_contig8671.16231.1|Name=mRNA_H-elongata_contig8671.16231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
RWHTRKTHSSPDRKLTTKTGSMTSLLHGVCWHRVVAEGAQILANPRSARA
TAVDSLVGGARWCMVDRESMLTVESASERMRGLAAFVGIPSEVPLVDAAE
CLFYDSRPRHIVPSPHRGPAA
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mRNA from alignment at H-elongata_contig8671:8639..9738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8671.16231.1 ID=mRNA_H-elongata_contig8671.16231.1|Name=mRNA_H-elongata_contig8671.16231.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-elongata_contig8671:8639..9738- (Himanthalia elongata Himel1 dioecious)
CGCTGGCATACGAGGAAAACTCATAGTAGTCCGGACCGAAAACTTACTAC
GAAAACCGGGTCCATGACATCTCTGCTGCATGGGGTAAGTTCCCGGGGAC
ATATCATATATCAACCATCGTTTCCTCTCCCCACGAACAAAACAGAAGCT
CGCTCAACTAGATAACCTAGACTATCACTATATACGTGACGCGGCTCTAC
GATTTTTTTTTACTATTCCGACTTGTTTTGCCAGTCTCCCTCGTTAACCA
CTGTACATTCCACAACGATAGCTCACCAGACGTTTTGTGGATGCGCGTCT
GGCCTTCGAGCGCTGAGTGTACTACTGGCTATTACACTATCCTACCTTTC
ACACAGTCCAAATANNNNNNNNNNGTCCAAATAGCTCTTGGGATACCATA
CAGCACAGCTCTTCGGCGATTTCCGTTAGGTTCGGGCAAAAGCGCGTTTG
GAAAACCTCTTAACCTATCCCATTATATTTCTGCATCTTATTATATACCA
ATATATATATATAACTAGGTTTGTTGGCATCGTGTAGTAGCCGAAGGAGC
TCAGATCCTTGCCAATCCGCGGAGTGCACGAGCCACCGCTGTCGATAGCT
TGGTGGGGGGTGCACGCTGGTGCATGGTCGACCGTGAGAGCATGTTGACG
GTGGAGAGCGCAAGCGAGCGCATGCGGGTAAGAAGGCTCATCAATCACCG
TAGTACCTGAATATATTTCGCGATATGGTTAGCGTTGAGCTCTTCGAGTT
CAGCGCAAGCTATCGGCGAGGAGGCTTTCTATTCTTGTGCTGTGCTGTTC
AGTTGTCTCTTCTTTCCGGATACGCCGCTCATTTCGCTCTTTGCTTGATA
TGAAATTGGATTCGGGAATCCTTGGTCAACAACACCACCTGCGACTGACT
ACCGGTGCATATTTGCCCCTGAGACCTGCTCGTATCCCAACCAACCTCTT
AAACGCCTCTCTTCGTGACTTGTAAACTAGGGACTCGCCGCGTTCGTTGG
TATTCCCAGTGAGGTTCCACTCGTGGACGCCGCCGAGTGTCTGTTCTACG
ACAGCAGACCAAGACATATCGTCCCATCTCCCCACAGGGGCCCCGCGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig8671:8639..9738-

>mRNA_H-elongata_contig8671.16231.1 ID=mRNA_H-elongata_contig8671.16231.1|Name=mRNA_H-elongata_contig8671.16231.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig8671:8639..9738- (Himanthalia elongata Himel1 dioecious)
CGCTGGCATACGAGGAAAACTCATAGTAGTCCGGACCGAAAACTTACTAC
GAAAACCGGGTCCATGACATCTCTGCTGCATGGGCGCTGGCATACGAGGA
AAACTCATAGTAGTCCGGACCGAAAACTTACTACGAAAACCGGGTCCATG
ACATCTCTGCTGCATGGGGTTTGTTGGCATCGTGTAGTAGCCGAAGGAGC
TCAGATCCTTGCCAATCCGCGGAGTGCACGAGCCACCGCTGTCGATAGCT
TGGTGGGGGGTGCACGCTGGTGCATGGTCGACCGTGAGAGCATGTTGACG
GTGGAGAGCGCAAGCGAGCGCATGCGGGTTTGTTGGCATCGTGTAGTAGC
CGAAGGAGCTCAGATCCTTGCCAATCCGCGGAGTGCACGAGCCACCGCTG
TCGATAGCTTGGTGGGGGGTGCACGCTGGTGCATGGTCGACCGTGAGAGC
ATGTTGACGGTGGAGAGCGCAAGCGAGCGCATGCGGGGACTCGCCGCGTT
CGTTGGTATTCCCAGTGAGGTTCCACTCGTGGACGCCGCCGAGTGTCTGT
TCTACGACAGCAGACCAAGACATATCGTCCCATCTCCCCACAGGGGCCCC
GCGGCTGGACTCGCCGCGTTCGTTGGTATTCCCAGTGAGGTTCCACTCGT
GGACGCCGCCGAGTGTCTGTTCTACGACAGCAGACCAAGACATATCGTCC
CATCTCCCCACAGGGGCCCCGCGGCT
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