mRNA_H-elongata_contig8671.16229.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8671.16229.1
Unique NamemRNA_H-elongata_contig8671.16229.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Match: A0A6H5KY95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY95_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.890e-53
Identity = 99/148 (66.89%), Postives = 119/148 (80.41%), Query Frame = 2 
Query:  638 ELGEVLEGERGLEALFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAV--RGDDGDDNVIPTS-LSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLKTATWFSICTLVAWEVYINSPLFQ-PQAPPPI 1069
            ELG+VLEG+R +EALFT+DWS MPAN GM K+ VPLPDIS FKP+ RA +++EQREK +  G V   GD  DD+ +P S L+ F+SKL PIVDREEER   +AAERF+EGPIV+GLKTATWFSICTLV WE+YINSP F  P++PPPI
Sbjct:  154 ELGDVLEGDRSVEALFTDDWSGMPANTGMTKSNVPLPDISEFKPSRRAESTLEQREKKSAVGLVVGAGDGDDDDAVPASRLAGFESKLTPIVDREEERRQKNAAERFEEGPIVRGLKTATWFSICTLVLWEIYINSPWFHAPESPPPI 301
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BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Match: D8LB46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB46_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 5.350e-51
Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = 2 
Query:  638 ELGEVLEGERGLEALFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAV----RGDDGDDNVIPTS-LSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLKTATWFSICTLVAWEVYINSPLFQ-PQAPPPI 1069
            ELG+VLEG+R +EALF++DWS MPAN GM K+ VPLPDIS FKP+ RA +++EQREK +  G V     G D D + +P S L+ F+SKL PIVDREEE    +AAERF+EGPIV+GLKTATWFSICTLV WEVYINSP F  P++PPP+
Sbjct:   59 ELGDVLEGDRSVEALFSDDWSGMPANTGMTKSNVPLPDISEFKPSRRAESTLEQREKKSAVGLVVGPGDGSDDDGDAVPASRLAGFESKLTPIVDREEEWRKKNAAERFEEGPIVRGLKTATWFSICTLVLWEVYINSPWFHAPESPPPM 208
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BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Match: A0A835YVC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.810e-12
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 2 
Query:  671 LEALFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAVRGDDGDDNVIPTSLSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLKTATWFSICTLVAWEVYINSPLFQP 1051
            L  LF +DWS M A  GM   +    D     P+    T +   +K                       F+S+L PI   + E   L+AAERF EG +VK +K ATWF++ +LVAWE+Y++SP F+P
Sbjct:   75 LADLFVDDWSGMQAPRGMKDKK----DAKEPLPSKDGKTELPDLKK-----------------------FESQLTPISGMKPEVRELTAAERFQEGNVVKAIKAATWFALLSLVAWEIYLHSPFFKP 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KY95_9PHAE4.890e-5366.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB46_ECTSI5.350e-5164.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVC2_9STRA4.810e-1235.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8671contigH-elongata_contig8671:978..3982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_005260.1
Exons3
Model size2260
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8671.16229.1prot_H-elongata_contig8671.16229.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8671 1207..2428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931268.1985118-UTR-H-elongata_contig8671:977..12061622931268.1985118-UTR-H-elongata_contig8671:977..1206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8671 978..1206 +
1691679766.7481098-UTR-H-elongata_contig8671:977..12061691679766.7481098-UTR-H-elongata_contig8671:977..1206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8671 978..1206 +
1622931268.245632-UTR-H-elongata_contig8671:2428..35481622931268.245632-UTR-H-elongata_contig8671:2428..3548Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8671 2429..3548 +
1691679766.7726984-UTR-H-elongata_contig8671:2428..35481691679766.7726984-UTR-H-elongata_contig8671:2428..3548Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8671 2429..3548 +
1622931268.2610078-UTR-H-elongata_contig8671:3917..39821622931268.2610078-UTR-H-elongata_contig8671:3917..3982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8671 3918..3982 +
1691679766.7857287-UTR-H-elongata_contig8671:3917..39821691679766.7857287-UTR-H-elongata_contig8671:3917..3982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8671 3918..3982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931268.2148113-CDS-H-elongata_contig8671:1206..17131622931268.2148113-CDS-H-elongata_contig8671:1206..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 1207..1713 +
1691679766.7563412-CDS-H-elongata_contig8671:1206..17131691679766.7563412-CDS-H-elongata_contig8671:1206..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 1207..1713 +
1622931268.2291074-CDS-H-elongata_contig8671:2089..24281622931268.2291074-CDS-H-elongata_contig8671:2089..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 2090..2428 +
1691679766.764459-CDS-H-elongata_contig8671:2089..24281691679766.764459-CDS-H-elongata_contig8671:2089..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8671 2090..2428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8671.16229.1

>prot_H-elongata_contig8671.16229.1 ID=prot_H-elongata_contig8671.16229.1|Name=mRNA_H-elongata_contig8671.16229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
MLSCAAAKVARFMSRFHDAMAFASLATCLTFTMNSIVALRINSSPAAFPT
THVTTHVSSSRTSNVCTFRPSQTSRSHRALLMAAGGKKRRKRKKGSDDSE
SPGASLASGAAVPGLSQDDVSKAGNGDGEPEFQSAMELGEVLEGERGLEA
LFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAV
RGDDGDDNVIPTSLSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLK
TATWFSICTLVAWEVYINSPLFQPQAPPPIT*
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mRNA from alignment at H-elongata_contig8671:978..3982+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8671.16229.1 ID=mRNA_H-elongata_contig8671.16229.1|Name=mRNA_H-elongata_contig8671.16229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3005bp|location=Sequence derived from alignment at H-elongata_contig8671:978..3982+ (Himanthalia elongata Himel1 dioecious)
GTTCTATTTTCCAAAGATGGCCCCAGAGTCTACAATCTCTATCAATCTCC
ATTTTCTAGTCTACATAAAAGAACCGTAGATCCATGGTTTGATTGGTCAG
ACAACGCAAAAGTCGGACAGTCTCGCCTTGATTAAGGCCTTTGAACCTTG
GGTGTTCGACTTCCTTGCGATTTGCTTGCCACGTATGGGGCAGGGAGAAA
TATATTTGCGACATTGAGAACAAGATTTAATGCTATCGTGTGCAGCAGCG
AAGGTGGCTCGCTTCATGTCGCGCTTTCACGATGCAATGGCTTTTGCAAG
TTTGGCGACTTGCCTTACGTTTACTATGAATAGTATTGTAGCTCTGAGAA
TAAACTCGTCGCCCGCAGCATTTCCCACAACACATGTTACAACACATGTT
TCTTCAAGTCGTACCAGCAACGTGTGCACATTCCGTCCCTCACAGACCTC
TCGATCCCACCGCGCCTTGCTGATGGCCGCTGGGGGTAAGAAGCGAAGAA
AACGTAAAAAAGGGTCCGATGATTCTGAAAGTCCAGGGGCTTCGTTGGCG
TCAGGGGCTGCCGTCCCAGGGCTATCACAAGATGATGTCTCTAAAGCAGG
CAATGGCGACGGGGAACCCGAGTTCCAAAGCGCGATGGAGCTCGGCGAAG
TCCTGGAGGGAGAGAGAGGACTCGAGGCGCTCTTTACGGAGGATTGGTCC
GACATGCCAGCGAACGATGGCATGGTCAAAACGCAGGTAAGCACTACGCT
AGTACCTGCGAATACGTTTAACGTTTGACGCCGGTTTCTAGCGGATGCGT
AGACTAGATCCATGTATACTTTTCAATTGTTGAACTTTGGATCGAAGCAT
CTCTCCAAGGAAATAATGTCTTCAGGAAAATCCTTGACCTCGCCTTCTTA
TGGTGGAATGCAGCAATAGTAACAGCGACGCTTTAAGCGAGGAACACAAC
AGTACCGCGGTACAGTTCTCTGTTCAATGTCGGTTGCTGCTTGGGAAAGG
TGTGTCAGCACTCGGCCATCCACGTGCGATGTCGTCAGCACGGAGAACAG
AAGCGCAACAGCTGTGAATTCGTTGCCTTCCTAAAATATAGCACCTCGCC
CCAATATTCAAGGTACCGCTGCCGGATATCAGTACCTTCAAGCCGACCAA
TCGGGCGGCGACGTCGATGGAGCAAAGAGAGAAGGGGGCTACACCTGGCG
CCGTCAGGGGCGATGACGGTGACGATAACGTGATACCTACAAGCCTCTCT
GACTTCAAGTCCAAGCTCCCGCCGATCGTAGACCGCGAGGAAGAGCGTCT
GGCGCTGAGTGCGGCGGAGCGTTTCGACGAAGGGCCGATTGTCAAAGGTC
TCAAGACAGCCACGTGGTTCAGTATCTGCACTCTTGTCGCGTGGGAGGTT
TATATTAACTCGCCTCTTTTCCAACCGCAGGCACCACCTCCGATCACGTA
GTCCCTTTCGGCTCGTAGAGATAACCTCCCTCCCTTCCTTTCTTCCTTGA
ACATACTTCCTGCACCGGCTACGACGCGCAAGCAGGGCGCTTGAACTTTG
TCCCGTGTGGGGTCGTCTGGCTGTCGGACAAGGCACAATCTGGAGGTTGA
CAGCTCGGTGGGTAGGCTATTCTCTTAGTTTGAGTAACTTCATCTGCTAG
CCCATCGGAAGCCGCAGAACGTAAGGCGTACGGGCGGGTTTTGTCGTAAC
CCGCACTAGGAAGAGTGACATTCAACTAACCTAGGTTGAAGGGGGTCGTT
GGGGCACTAGAATTGCGTGTGAGTTCTTGAGTGTGTACAGGTACTTGGGC
CGTCTCCAGGATCTGGATATCCACTTTGACTGCTTGTATTTCGATCCGTG
CCTAGTGATGTTAAGAGTGGTTTTGGGGGGGGAGTTATTGCTTGCTCTAG
ATAAGCTTCGAAGTAATTGTTTCTTTTCATAGTTATTTTTACTCGGTTAC
AAATCAATTGGACGATGGCGGATGGTTGCAGGCGCATGCACTGGATCTTG
GTGTAGATTCCTGCTCGTCAAATGTCGCCGCTCACAGTGTAGTCTCAGAC
GAAAAACTTTGTGAGGGCATTTTGTCCACGTTCTGCTTCACCAGGTACAC
AGGAGGCGTATCGCCACAGACGGTGTCGATTGCGTTTTGTTCCTCAGTTA
CGGTAACATTTTTGTGCTGCTTGTTTGAGTGAAAAATAATGAGGTTGGTA
GTGTCATTTCACGTTCAGTCGCTCCCTTTAGCGACTTCATTGTCCAACAT
GAGACACTTGTAGACGTGGGGCACTTCGTCAACGAAGTTTGAATCCTCAC
GCTGCAGACCTTCACTGGAGCACTTATATATATAGACATAAAATACGAGC
GCGACAATTGATTTATTATGAATCTACATCTCGCCAAGAGCGAAAAAAAA
ATGCTGCGAGGTTGGATTGTAACGCAGGCTTGTGAAGCACGTATGACTCG
AACAGTGAGGCTCTAGTCAGACAGCACGCCGCTTTTCATGATCATGAGGG
TCCAAGCTCCCCGAGGGTGATCAATTCTTGCGATGCCCATCTAGCCGCCA
TCTTTTTCATGACAAACTGGTCCTGTGGAAGAAATTCGTGGGATACAGGG
AAGGAAGACACGTTGACAAATTATTCACACAACGAGTACCGGTACTCCGT
AGCCCTATTAATAGGCGTTTCGATTGCGAAACAGAGTGTTTCCACAAAAT
TATCCGCATGAACAAATCGAATATGTCGCATATGCTGCATATGCTGCCAT
ATATTATGTTGAGAAGAGCCGTTTTCGGGTCGAGAATAGGTCAGAGAACT
AGATCATGCACATGCACTTGACCACGAGCGCGACATGAGCATTGTGTGGA
AAGCGTTTTTTCGCACGCAGAAAGCAAAGGCTACGACGCGCTACTCCATC
GAGTGGGTACCGACGTGCTACTCCATATACAGTGCCCTTACCTTCCGCTG
GAGAACATGTAGCCCGTCGCTCAAGGCGCGCTCGAGAGTGTTGGTTGCCT
CCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig8671:978..3982+

>mRNA_H-elongata_contig8671.16229.1 ID=mRNA_H-elongata_contig8671.16229.1|Name=mRNA_H-elongata_contig8671.16229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig8671:978..3982+ (Himanthalia elongata Himel1 dioecious)
ATGCTATCGTGTGCAGCAGCGAAGGTGGCTCGCTTCATGTCGCGCTTTCA
CGATGCAATGGCTTTTGCAAGTTTGGCGACTTGCCTTACGTTTACTATGA
ATAGTATTGTAGCTCTGAGAATAAACTCGTCGCCCGCAGCATTTCCCACA
ACACATGTTACAACACATGTTTCTTCAAGTCGTACCAGCAACGTGTGCAC
ATTCCGTCCCTCACAGACCTCTCGATCCCACCGCGCCTTGCTGATGGCCG
CTGGGGGTAAGAAGCGAAGAAAACGTAAAAAAGGGTCCGATGATTCTGAA
AGTCCAGGGGCTTCGTTGGCGTCAGGGGCTGCCGTCCCAGGGCTATCACA
AGATGATGTCTCTAAAGCAGGCAATGGCGACGGGGAACCCGAGTTCCAAA
GCGCGATGGAGCTCGGCGAAGTCCTGGAGGGAGAGAGAGGACTCGAGGCG
CTCTTTACGGAGGATTGGTCCGACATGCCAGCGAACGATGGCATGGTCAA
AACGCAGATGCTATCGTGTGCAGCAGCGAAGGTGGCTCGCTTCATGTCGC
GCTTTCACGATGCAATGGCTTTTGCAAGTTTGGCGACTTGCCTTACGTTT
ACTATGAATAGTATTGTAGCTCTGAGAATAAACTCGTCGCCCGCAGCATT
TCCCACAACACATGTTACAACACATGTTTCTTCAAGTCGTACCAGCAACG
TGTGCACATTCCGTCCCTCACAGACCTCTCGATCCCACCGCGCCTTGCTG
ATGGCCGCTGGGGGTAAGAAGCGAAGAAAACGTAAAAAAGGGTCCGATGA
TTCTGAAAGTCCAGGGGCTTCGTTGGCGTCAGGGGCTGCCGTCCCAGGGC
TATCACAAGATGATGTCTCTAAAGCAGGCAATGGCGACGGGGAACCCGAG
TTCCAAAGCGCGATGGAGCTCGGCGAAGTCCTGGAGGGAGAGAGAGGACT
CGAGGCGCTCTTTACGGAGGATTGGTCCGACATGCCAGCGAACGATGGCA
TGGTCAAAACGCAGGTACCGCTGCCGGATATCAGTACCTTCAAGCCGACC
AATCGGGCGGCGACGTCGATGGAGCAAAGAGAGAAGGGGGCTACACCTGG
CGCCGTCAGGGGCGATGACGGTGACGATAACGTGATACCTACAAGCCTCT
CTGACTTCAAGTCCAAGCTCCCGCCGATCGTAGACCGCGAGGAAGAGCGT
CTGGCGCTGAGTGCGGCGGAGCGTTTCGACGAAGGGCCGATTGTCAAAGG
TCTCAAGACAGCCACGTGGTTCAGTATCTGCACTCTTGTCGCGTGGGAGG
TTTATATTAACTCGCCTCTTTTCCAACCGCAGGCACCACCTCCGATCACG
TAGGTACCGCTGCCGGATATCAGTACCTTCAAGCCGACCAATCGGGCGGC
GACGTCGATGGAGCAAAGAGAGAAGGGGGCTACACCTGGCGCCGTCAGGG
GCGATGACGGTGACGATAACGTGATACCTACAAGCCTCTCTGACTTCAAG
TCCAAGCTCCCGCCGATCGTAGACCGCGAGGAAGAGCGTCTGGCGCTGAG
TGCGGCGGAGCGTTTCGACGAAGGGCCGATTGTCAAAGGTCTCAAGACAG
CCACGTGGTTCAGTATCTGCACTCTTGTCGCGTGGGAGGTTTATATTAAC
TCGCCTCTTTTCCAACCGCAGGCACCACCTCCGATCACGTAG
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