mRNA_H-elongata_contig86681.16225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86681.16225.1
Unique NamemRNA_H-elongata_contig86681.16225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86681.16225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86681contigH-elongata_contig86681:21..1520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size168
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86681.16225.1prot_H-elongata_contig86681.16225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86681 21..1513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.8133218-CDS-H-elongata_contig86681:20..711622931267.8133218-CDS-H-elongata_contig86681:20..71Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86681 21..71 -
1691679766.567348-CDS-H-elongata_contig86681:20..711691679766.567348-CDS-H-elongata_contig86681:20..71Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86681 21..71 -
1622931267.8275256-CDS-H-elongata_contig86681:1405..15131622931267.8275256-CDS-H-elongata_contig86681:1405..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86681 1406..1513 -
1691679766.5776033-CDS-H-elongata_contig86681:1405..15131691679766.5776033-CDS-H-elongata_contig86681:1405..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86681 1406..1513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.8422964-UTR-H-elongata_contig86681:1513..15201622931267.8422964-UTR-H-elongata_contig86681:1513..1520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86681 1514..1520 -
1691679766.5973773-UTR-H-elongata_contig86681:1513..15201691679766.5973773-UTR-H-elongata_contig86681:1513..1520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86681 1514..1520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86681.16225.1

>prot_H-elongata_contig86681.16225.1 ID=prot_H-elongata_contig86681.16225.1|Name=mRNA_H-elongata_contig86681.16225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MPRFTFFVSLIPLLVFGQDATYATKKDVSTQEAGAQVANGVYLRSPFGSY
EDN
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mRNA from alignment at H-elongata_contig86681:21..1520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86681.16225.1 ID=mRNA_H-elongata_contig86681.16225.1|Name=mRNA_H-elongata_contig86681.16225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1500bp|location=Sequence derived from alignment at H-elongata_contig86681:21..1520- (Himanthalia elongata Himel1 dioecious)
ATAAGTCATGCCACGATTCACCTTCTTCGTCAGTTTAATACCTCTCCTAG
TTTTCGGTCAGGATGCCACTTACGCAACAAAAAAAGACGTCAGCACCCAG
GAAGCTGGAGCCCAGGTAGGCTCCGCACGGACAAGTCCCAGCAGTGAGTG
GTGAACGAAATAATCCACATTTCACAAAGACACTCATCGGGGTGGTTGTT
GTTAGATCATGGATCGGGTTTTGGGGTTTTCTTTGGCTGGTAATTTCATT
ATTATTGTATTGTGACCTGATACCAACACCACCAATACCTACAGCAGCTG
CAGTCATTAACATTAATAATTATTTACGGTGTGCGATTTTATGCCTTCTT
GGTCCTCGTTCCATTACTAATTATACTAGTATTACGACTAATAAAATCTA
ATTCTATCACTACTACTACTGTGTCTAGAAGGCAAGAAGTTCTAGAATTA
TTCAAATAATAATATTAGTTCTCACAAGCGTTTTATCATTTCGGCCAGTG
GTTATGAGTAGTATATGTAGTATACACTATGAGAAAACGAAATATAAGCA
AGCGTATAATAGTCTACAATATCGTAGTACAAAATAACTAAATGGACGAC
CGTTTGTTATTATTTTTATTTAAAAGACTTGAGGGTCACCCCCCCCCGGA
ATGCGAAGAAAGAGCTTCTCGCCTTCCAGATCGCGTAAGGTCCTCTACCC
GGACGACACACACACACATACACTTGTAATACCATAACTTAACATGCTTA
CCGCTTGCAGTCTGTCACTGTTACTGCGGCGTTGTTGAAGAAATACTAGA
TTATTTATATGTTTTAAAAGGAAACTTCAATCATCGTGATAGGTTGAAAT
TACTTGAAGAGTTACGATGAAGGAGCGATCAACTTGCGAGGCGGTACAGA
ATGAATAGGCCTAGAGTAATAGCGTACTTGCAGTACTAATAGTAGTATTA
TAGTTAGTATTCTTAGTGGTACATTACGAGCGTTTCCTGTAATAATAATG
TTCTTATTGTCGTCATCCTCACAATCTGACGTCTCCAGGGATGGTAGCTC
CTCACAAAAAGGAAAGAGGGTATTTTTAGCAAACTGACTGGCATATCGCC
CCCTTATTATTATTAATATTAAAAAAACTATACTCATTCCAACTTTCCAA
CCCTCTAACCCTCCGAACATCCACACCTTCTTAGCGGCGTGATGCCGGTT
TGAGCGGTCTATAATAATAATATAGTTTAATAAAATAAAAAATGGGAAAA
AAACAGCACATTACCCTCCCGGGGTTAATTAAGGCAGGTGATAATGCCAT
TCAATAACCGCGAGCAGAAGACAACCAAATCCGGTTGATCTTACTCTGCC
GAAAGTGTGACCAGCATTATTATGTGAAATGCAAGGCAATATCTATAACG
AAGTCCCTCGGTGCATGTCCGGCTTAAATTATATCGCTTTTTTAAACAGG
TTGCTAACGGTGTCTACTTGCGTAGTCCATTCGGCTCCTACGAAGACAAC
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Coding sequence (CDS) from alignment at H-elongata_contig86681:21..1520-

>mRNA_H-elongata_contig86681.16225.1 ID=mRNA_H-elongata_contig86681.16225.1|Name=mRNA_H-elongata_contig86681.16225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig86681:21..1520- (Himanthalia elongata Himel1 dioecious)
ATGCCACGATTCACCTTCTTCGTCAGTTTAATACCTCTCCTAGTTTTCGG
TCAGGATGCCACTTACGCAACAAAAAAAGACGTCAGCACCCAGGAAGCTG
GAGCCCAGATGCCACGATTCACCTTCTTCGTCAGTTTAATACCTCTCCTA
GTTTTCGGTCAGGATGCCACTTACGCAACAAAAAAAGACGTCAGCACCCA
GGAAGCTGGAGCCCAGGTTGCTAACGGTGTCTACTTGCGTAGTCCATTCG
GCTCCTACGAAGACAACGTTGCTAACGGTGTCTACTTGCGTAGTCCATTC
GGCTCCTACGAAGACAAC
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