mRNA_H-elongata_contig86630.16222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86630.16222.1
Unique NamemRNA_H-elongata_contig86630.16222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86630.16222.1 vs. uniprot
Match: D8LLB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB0_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 2.510e-57
Identity = 107/160 (66.88%), Postives = 120/160 (75.00%), Query Frame = 1 
Query:   40 GGAAAVGSGYGGEIPPGVIPGSNVSVLPSFMDDLKTRACMPVRTVVEPALAAYSVNGGTNAPGRDRGRSGGRGGRGVKRKA----RVGVEPVYKFRLRGRIGRGGRVMWDRVPVKGAHPLRDDGLADPEEAPLVVHSTYVQFPIKPPSAHILHPPMVNLN 507
            GG A+VG   GG    G+IPGS+V+VLPSFMDDLKTR  +PVRTVVEPALA Y+  GG +A G                      RVGVEPVYKFRLRGRIGRGGRV+WDRVPV+GA P R+DGLADPEEAP+VVHS+YVQFP KPPSAH+LHPPMVNLN
Sbjct:  286 GGVASVGEDGGGSF--GIIPGSHVTVLPSFMDDLKTRESIPVRTVVEPALAVYTALGGRDAKGXXXXXXXXXXXXXXXXXXXXXXRVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAPVVVHSSYVQFPFKPPSAHVLHPPMVNLN 443
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BLAST of mRNA_H-elongata_contig86630.16222.1 vs. uniprot
Match: A0A835YT95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT95_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.860e-8
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:  100 GSNVSVLPSFMDDLKTRACMPVRTVVEPALAAYSVNGGTNAPGRDRGRSGGRGGRGVKRKARVGVEPVYKFRLRGRIGRGGRVMWDRVPV 369
            G + ++LPSFMD+   R    +   VEPAL A++V                   RG+        EPV KFR RGRIGRGGRV++DRVPV
Sbjct:  334 GEDTALLPSFMDNFMNRTKASMSGRVEPALPAFTV-------------------RGI-------CEPVTKFRCRGRIGRGGRVVFDRVPV 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86630.16222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLB0_ECTSI2.510e-5766.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT95_9STRA6.860e-842.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86630contigH-elongata_contig86630:1484..2342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue2.1e-48
Seed eggNOG ortholog2880.D8LLB0
Preferred nameEPC1
KEGG koko:K11322
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005720,GO:0005725,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016239,GO:0016241,GO:0016358,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032777,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035267,GO:0036211,GO:0040011,GO:0040029,GO:0042221,GO:0042330,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.internal peptidyl-lysine acetylation
EggNOG OGsKOG2261@1,KOG2261@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.3493125-CDS-H-elongata_contig86630:1483..18001622931267.3493125-CDS-H-elongata_contig86630:1483..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86630 1484..1800 +
1691679766.3153985-CDS-H-elongata_contig86630:1483..18001691679766.3153985-CDS-H-elongata_contig86630:1483..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86630 1484..1800 +
1622931267.3674126-CDS-H-elongata_contig86630:2152..23421622931267.3674126-CDS-H-elongata_contig86630:2152..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86630 2153..2342 +
1691679766.3283632-CDS-H-elongata_contig86630:2152..23421691679766.3283632-CDS-H-elongata_contig86630:2152..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86630 2153..2342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86630.16222.1prot_H-elongata_contig86630.16222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86630 1484..2342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86630.16222.1

>prot_H-elongata_contig86630.16222.1 ID=prot_H-elongata_contig86630.16222.1|Name=mRNA_H-elongata_contig86630.16222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
EGEGVQGGAHGSEGGAAAVGSGYGGEIPPGVIPGSNVSVLPSFMDDLKTR
ACMPVRTVVEPALAAYSVNGGTNAPGRDRGRSGGRGGRGVKRKARVGVEP
VYKFRLRGRIGRGGRVMWDRVPVKGAHPLRDDGLADPEEAPLVVHSTYVQ
FPIKPPSAHILHPPMVNLN
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mRNA from alignment at H-elongata_contig86630:1484..2342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86630.16222.1 ID=mRNA_H-elongata_contig86630.16222.1|Name=mRNA_H-elongata_contig86630.16222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=859bp|location=Sequence derived from alignment at H-elongata_contig86630:1484..2342+ (Himanthalia elongata Himel1 dioecious)
GAAGGGGAGGGCGTTCAGGGCGGCGCGCACGGAAGCGAGGGTGGAGCAGC
AGCAGTCGGCAGTGGCTATGGAGGGGAGATTCCACCGGGTGTGATTCCCG
GGTCGAACGTGTCCGTCTTGCCATCGTTCATGGACGACCTCAAGACGAGG
GCGTGTATGCCTGTTCGAACCGTGGTGGAGCCTGCGCTGGCTGCGTATTC
CGTGAATGGGGGCACGAACGCGCCGGGGAGAGACCGTGGGAGATCGGGCG
GGCGAGGGGGGAGGGGAGTGAAGCGGAAAGCGCGAGTTGGGGTGGAGCCT
GTGTATAAATTCAGACTGTGAGTTTCCCGGCCGGAGAAAGTGATGACAGC
TAGAGAGAGGGTTTGGTGAGAAACATGTTGCTGTATTTTTCACTGGGGTT
GGTTTGACAAGAGGCGTTACCCGTCCGAGAGGAATGGCAAAACGATGCGC
GCTCATAGTAACGAAATAATGTGTAACCCCCGATCCGCCCCGACTTCTTT
TTTGACCTAATGAATGTCGTTTTCGTTCTCTTACTCCGTCGCGCTTTGTT
TCTTCGTTTTTGCGCTGATGTTTCTCCCCGATCGTGAATAAAAAATGGCT
TGGAAATAAAATAATAATAAAAAATGGCGGAATTTTATACTTTTCAACGC
TTGGGGGGGGGTGGAAAAGGCGGGGTCGGATCGGGCGGGGGGGGCGGGTG
ATGTGGGATCGCGTTCCCGTGAAGGGAGCACATCCGTTACGTGACGATGG
TCTGGCTGATCCAGAAGAAGCACCGCTCGTGGTGCACAGTACATACGTCC
AGTTTCCGATCAAGCCACCTTCGGCTCATATCCTGCACCCGCCAATGGTG
AACCTGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig86630:1484..2342+

>mRNA_H-elongata_contig86630.16222.1 ID=mRNA_H-elongata_contig86630.16222.1|Name=mRNA_H-elongata_contig86630.16222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig86630:1484..2342+ (Himanthalia elongata Himel1 dioecious)
GAAGGGGAGGGCGTTCAGGGCGGCGCGCACGGAAGCGAGGGTGGAGCAGC
AGCAGTCGGCAGTGGCTATGGAGGGGAGATTCCACCGGGTGTGATTCCCG
GGTCGAACGTGTCCGTCTTGCCATCGTTCATGGACGACCTCAAGACGAGG
GCGTGTATGCCTGTTCGAACCGTGGTGGAGCCTGCGCTGGCTGCGTATTC
CGTGAATGGGGGCACGAACGCGCCGGGGAGAGACCGTGGGAGATCGGGCG
GGCGAGGGGGGAGGGGAGTGAAGCGGAAAGCGCGAGTTGGGGTGGAGCCT
GTGTATAAATTCAGACTGAAGGGGAGGGCGTTCAGGGCGGCGCGCACGGA
AGCGAGGGTGGAGCAGCAGCAGTCGGCAGTGGCTATGGAGGGGAGATTCC
ACCGGGTGTGATTCCCGGGTCGAACGTGTCCGTCTTGCCATCGTTCATGG
ACGACCTCAAGACGAGGGCGTGTATGCCTGTTCGAACCGTGGTGGAGCCT
GCGCTGGCTGCGTATTCCGTGAATGGGGGCACGAACGCGCCGGGGAGAGA
CCGTGGGAGATCGGGCGGGCGAGGGGGGAGGGGAGTGAAGCGGAAAGCGC
GAGTTGGGGTGGAGCCTGTGTATAAATTCAGACTGCGGGGTCGGATCGGG
CGGGGGGGGCGGGTGATGTGGGATCGCGTTCCCGTGAAGGGAGCACATCC
GTTACGTGACGATGGTCTGGCTGATCCAGAAGAAGCACCGCTCGTGGTGC
ACAGTACATACGTCCAGTTTCCGATCAAGCCACCTTCGGCTCATATCCTG
CACCCGCCAATGGTGAACCTGAACGCGGGGTCGGATCGGGCGGGGGGGGC
GGGTGATGTGGGATCGCGTTCCCGTGAAGGGAGCACATCCGTTACGTGAC
GATGGTCTGGCTGATCCAGAAGAAGCACCGCTCGTGGTGCACAGTACATA
CGTCCAGTTTCCGATCAAGCCACCTTCGGCTCATATCCTGCACCCGCCAA
TGGTGAACCTGAAC
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