mRNA_H-elongata_contig86595.16218.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86595.16218.1
Unique NamemRNA_H-elongata_contig86595.16218.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: D7G097_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G097_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 6.170e-40
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 KTISIFQEWVPGSVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASKV 228
            KTISIFQEWVPGSVTTLLVNFGPF DRRIA YTKQIL+GL YLH+ERVIHRDIKGGNIL+DDRGVVKLCDFGASK+
Sbjct:  129 KTISIFQEWVPGSVTTLLVNFGPFSDRRIADYTKQILQGLVYLHSERVIHRDIKGGNILIDDRGVVKLCDFGASKL 204
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A835YZY1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.420e-36
Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 KTISIFQEWVPGSVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASKV 228
            +TISIFQEWVP SVT+LLVNFGPF +RR+   T+QIL+GL YLHA+RV+HRDIKG NIL+DDRGVVKLCDFGASK+
Sbjct:   25 RTISIFQEWVPMSVTSLLVNFGPFKERRVVQVTRQILEGLVYLHAKRVVHRDIKGSNILIDDRGVVKLCDFGASKM 100
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A4P9YT14_9FUNG (Kinase-like domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YT14_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 7.990e-25
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    7 ISIFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASK 225
            ++IF E+VPG SV ++LVN+GPF +  + SY +QIL GLEYLH + +IHRDIKGGNIL+D+RGV+K+ DFG SK
Sbjct:   74 LNIFLEYVPGGSVASMLVNYGPFQEPLVKSYLRQILLGLEYLHGQGIIHRDIKGGNILVDNRGVIKISDFGVSK 147
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A4P9YV89_9FUNG (MEK kinase n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YV89_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 6.830e-24
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    7 ISIFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASK 225
            ++IF E+VPG SV ++LVN+GPF +  + SY +QIL GLEYLH + +IHRDIKGGNIL+D+RGV+K+ DFG SK
Sbjct:   74 LNIFLEYVPGGSVASMLVNYGPFQEPLVKSYLRQILLGLEYLHGQGIIHRDIKGGNILVDNRGVIKISDFGVSK 147
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A7S1XYM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYM9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.150e-23
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    7 ISIFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASKV 228
            + IFQEWVPG S+++LL  FGPF +R   SYT+Q+L GL YLHA  +IHRDIKG NIL+DD G VK+ DFG SKV
Sbjct:  259 VYIFQEWVPGGSISSLLKRFGPFSERMCQSYTRQVLNGLTYLHANSIIHRDIKGANILVDDLGNVKVSDFGCSKV 333
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A7S2UM08_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM08_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.200e-23
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    7 ISIFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASK 225
            + IFQEWVPG SV++LL  FGPF    +  Y KQIL+GLEYLH+ R++HRDIKGGNIL+ D G+VKL DFGAS+
Sbjct:  260 LHIFQEWVPGGSVSSLLKKFGPFPVLVVQCYLKQILEGLEYLHSHRILHRDIKGGNILVSDEGIVKLADFGASR 333
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A7S3PRR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PRR1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.770e-23
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   13 IFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASK 225
            IF EWVPG S++ LL  FG   +  + +Y+KQIL GL YLH + VIHRDIKG NIL+DDRG +KL DFGASK
Sbjct:   20 IFTEWVPGGSISNLLQKFGRLTESVVRNYSKQILLGLNYLHNKEVIHRDIKGANILVDDRGTIKLADFGASK 91
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BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A835YLD7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.030e-23
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    7 ISIFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGAS 222
            + IFQEWVPG SV++LL  FGPF +     YT+Q L+GL YLH  +V+HRDIKG NIL+DDRG VKL DFGAS
Sbjct:  164 LCIFQEWVPGGSVSSLLRRFGPFSEDMTRRYTRQALRGLTYLHQHQVVHRDIKGSNILVDDRGTVKLADFGAS 236
[Close]
BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A835YLS7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.830e-23
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    7 ISIFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGAS 222
            + IFQEWVPG SV++LL  FGPF +     YT+Q L+GL YLH+  V+HRDI G NIL+DD GVVKL DFGAS
Sbjct:   80 LCIFQEWVPGGSVSSLLQRFGPFSEDMTRGYTRQALQGLAYLHSHHVVHRDINGSNILVDDHGVVKLADFGAS 152
[Close]
BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Match: A0A7S1FWX6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWX6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.050e-22
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    4 TISIFQEWVPG-SVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIHRDIKGGNILLDDRGVVKLCDFGASK 225
            T+ IFQEWVPG SV  LL  FG F    + +Y +Q+LKGL YLHA  +IHRDIKGGNIL+DDRG VKL DFGASK
Sbjct:  216 TLYIFQEWVPGGSVADLLKKFGGFGYGVVRNYLEQVLKGLAYLHANNIIHRDIKGGNILVDDRGNVKLADFGASK 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86595.16218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G097_ECTSI6.170e-4090.79Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YZY1_9STRA3.420e-3677.63Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A4P9YT14_9FUNG7.990e-2562.16Kinase-like domain-containing protein n=1 Tax=Sync... [more]
A0A4P9YV89_9FUNG6.830e-2462.16MEK kinase n=1 Tax=Syncephalis pseudoplumigaleata ... [more]
A0A7S1XYM9_9STRA1.150e-2364.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2UM08_9STRA2.200e-2364.86Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]
A0A7S3PRR1_9STRA6.770e-2362.50Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A835YLD7_9STRA7.030e-2364.38Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YLS7_9STRA7.830e-2363.01Kinase-like domain-containing protein (Fragment) n... [more]
A0A7S1FWX6_9STRA1.050e-2266.67Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86595contigH-elongata_contig86595:885..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.5e-33
Seed eggNOG ortholog2880.D7G097
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0006952,GO:0007034,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016192,GO:0016197,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019787,GO:0023051,GO:0023052,GO:0023057,GO:0031410,GO:0031982,GO:0031984,GO:0032446,GO:0032502,GO:0032870,GO:0032940,GO:0033993,GO:0036211,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043621,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045324,GO:0046903,GO:0046907,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0065007,GO:0070647,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0097305,GO:0097306,GO:0097708,GO:0098791,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1901701,GO:1905957,GO:1905958
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931266.939431-CDS-H-elongata_contig86595:884..11151622931266.939431-CDS-H-elongata_contig86595:884..1115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86595 885..1115 -
1691679766.20442-CDS-H-elongata_contig86595:884..11151691679766.20442-CDS-H-elongata_contig86595:884..1115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86595 885..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86595.16218.1prot_H-elongata_contig86595.16218.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86595 885..1115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86595.16218.1

>prot_H-elongata_contig86595.16218.1 ID=prot_H-elongata_contig86595.16218.1|Name=mRNA_H-elongata_contig86595.16218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
KTISIFQEWVPGSVTTLLVNFGPFCDRRIASYTKQILKGLEYLHAERVIH
RDIKGGNILLDDRGVVKLCDFGASKVF
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mRNA from alignment at H-elongata_contig86595:885..1115-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86595.16218.1 ID=mRNA_H-elongata_contig86595.16218.1|Name=mRNA_H-elongata_contig86595.16218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig86595:885..1115- (Himanthalia elongata Himel1 dioecious)
AAGACTATTTCAATCTTTCAGGAATGGGTGCCTGGGTCAGTAACAACGCT
GCTTGTAAACTTTGGGCCTTTCTGCGACCGACGAATAGCTAGCTACACCA
AACAGATTCTGAAGGGGCTCGAGTATCTTCACGCGGAAAGAGTTATCCAC
CGCGACATCAAGGGAGGAAATATTCTTCTCGACGACCGCGGCGTGGTGAA
GCTCTGTGACTTCGGCGCCTCCAAGGTATTT
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Coding sequence (CDS) from alignment at H-elongata_contig86595:885..1115-

>mRNA_H-elongata_contig86595.16218.1 ID=mRNA_H-elongata_contig86595.16218.1|Name=mRNA_H-elongata_contig86595.16218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig86595:885..1115- (Himanthalia elongata Himel1 dioecious)
AAGACTATTTCAATCTTTCAGGAATGGGTGCCTGGGTCAGTAACAACGCT
GCTTGTAAACTTTGGGCCTTTCTGCGACCGACGAATAGCTAGCTACACCA
AACAGATTCTGAAGGGGCTCGAGTATCTTCACGCGGAAAGAGTTATCCAC
CGCGACATCAAGGGAGGAAATATTCTTCTCGACGACCGCGGCGTGGTGAA
GCTCTGTGACTTCGGCGCCTCCAAGGTATTTAAGACTATTTCAATCTTTC
AGGAATGGGTGCCTGGGTCAGTAACAACGCTGCTTGTAAACTTTGGGCCT
TTCTGCGACCGACGAATAGCTAGCTACACCAAACAGATTCTGAAGGGGCT
CGAGTATCTTCACGCGGAAAGAGTTATCCACCGCGACATCAAGGGAGGAA
ATATTCTTCTCGACGACCGCGGCGTGGTGAAGCTCTGTGACTTCGGCGCC
TCCAAGGTATTT
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