mRNA_H-elongata_contig86524.16217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86524.16217.1
Unique NamemRNA_H-elongata_contig86524.16217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JVM6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.700e-17
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            EF ATNTPQ+IGVSER G TL A+ R +L D  FP  MWGEL MTAA+L NRTPH
Sbjct:  242 EFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPH 296
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.330e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:   62 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 116
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.400e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  520 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 574
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.410e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.420e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  392 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 446
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.430e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.430e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.430e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.390e-17
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGE+ +TAA+L NR+PH
Sbjct:  150 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPH 204
[Close]
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.670e-17
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   10 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 174
            EF ATNTPQ+IGVSER G TL A+ R +L D  FP  MWGEL MTAA+L NRTPH
Sbjct:  390 EFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPH 444
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVM6_9PHAE3.700e-1769.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5H2_9PHAE4.330e-1767.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE4.400e-1767.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE4.410e-1767.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE4.420e-1767.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE4.430e-1767.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE4.430e-1767.27Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE4.430e-1767.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE5.390e-1765.45Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JQY8_9PHAE5.670e-1769.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86524contigH-elongata_contig86524:2153..2329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog164328.Phyra85520
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931266.8781028-CDS-H-elongata_contig86524:2152..23291622931266.8781028-CDS-H-elongata_contig86524:2152..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86524 2153..2329 -
1691679766.1920183-CDS-H-elongata_contig86524:2152..23291691679766.1920183-CDS-H-elongata_contig86524:2152..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86524 2153..2329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86524.16217.1prot_H-elongata_contig86524.16217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86524 2153..2329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86524.16217.1

>prot_H-elongata_contig86524.16217.1 ID=prot_H-elongata_contig86524.16217.1|Name=mRNA_H-elongata_contig86524.16217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
IIQEFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAA
HLKNRTPHK
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mRNA from alignment at H-elongata_contig86524:2153..2329-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86524.16217.1 ID=mRNA_H-elongata_contig86524.16217.1|Name=mRNA_H-elongata_contig86524.16217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig86524:2153..2329- (Himanthalia elongata Himel1 dioecious)
ATTATCCAAGAGTTTACCGCAACCAACACGCCACAGCAAATCGGTGTGTC
CGAACGAGTGGGGAGTACTCTGTGCGCGATGGTTCGATGCATGCTCGCAG
ACAGTGGCTTCCCATCGTCCATGTGGGGGGAGTTGTTCATGACGGCTGCG
CATCTCAAGAACAGGACTCCGCACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig86524:2153..2329-

>mRNA_H-elongata_contig86524.16217.1 ID=mRNA_H-elongata_contig86524.16217.1|Name=mRNA_H-elongata_contig86524.16217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig86524:2153..2329- (Himanthalia elongata Himel1 dioecious)
ATTATCCAAGAGTTTACCGCAACCAACACGCCACAGCAAATCGGTGTGTC
CGAACGAGTGGGGAGTACTCTGTGCGCGATGGTTCGATGCATGCTCGCAG
ACAGTGGCTTCCCATCGTCCATGTGGGGGGAGTTGTTCATGACGGCTGCG
CATCTCAAGAACAGGACTCCGCACAAGATTATCCAAGAGTTTACCGCAAC
CAACACGCCACAGCAAATCGGTGTGTCCGAACGAGTGGGGAGTACTCTGT
GCGCGATGGTTCGATGCATGCTCGCAGACAGTGGCTTCCCATCGTCCATG
TGGGGGGAGTTGTTCATGACGGCTGCGCATCTCAAGAACAGGACTCCGCA
CAAG
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