mRNA_H-elongata_contig8651.16215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8651.16215.1
Unique NamemRNA_H-elongata_contig8651.16215.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8651.16215.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 9.810e-64
Identity = 109/144 (75.69%), Postives = 117/144 (81.25%), Query Frame = 2 
Query:  185 RGSAEAVQAEPLLLWFRALCTQILHEPDPGVVALEERYNPGRDLNKVATKYKLPPVLVETLYRRHTMICRRSSTNSLDVQEWLSVVGYLIPEALGRRVFQFFAQSGGLAWTVADFITFLCVCVLDSRQEHASVMFQLFDVDRDG 616
            RG+A A QAEPLL WFR LCT+IL EP P VVALE+RYNP RDLNKV TKYKL   L + L RR   ICRRSS N+LDVQEWLS VGYL PEAL RRVFQ+FAQSGGLAWTVAD I FLC  VLDSRQEH S++FQLFDVDRDG
Sbjct:  171 RGTAAAAQAEPLLQWFRVLCTRILEEPHPAVVALEQRYNPERDLNKVVTKYKLSAGLTDVLCRRQAFICRRSSANALDVQEWLSAVGYLFPEALARRVFQYFAQSGGLAWTVADLIRFLCSWVLDSRQEHVSIIFQLFDVDRDG 314
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BLAST of mRNA_H-elongata_contig8651.16215.1 vs. uniprot
Match: D8LR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 5.100e-57
Identity = 99/136 (72.79%), Postives = 108/136 (79.41%), Query Frame = 2 
Query:  185 RGSAEAVQAEPLLLWFRALCTQILHEPDPGVVALEERYNPGRDLNKVATKYKLPPVLVETLYRRHTMICRRSSTNSLDVQEWLSVVGYLIPEALGRRVFQFFAQSGGLAWTVADFITFLCVCVLDSRQEHASVMFQ 592
            RG+A A QAEPLL WFR LCT+IL EP P VVALE+RYNP RDL+KV TKYKL   L + L RRH  ICRRSS N+LDVQEWLS VGYL PE L RRVFQ+FAQSGGLAWTVAD + FLC  VLD RQEH S+MFQ
Sbjct:  194 RGTAAAAQAEPLLQWFRVLCTRILEEPHPAVVALEQRYNPERDLSKVVTKYKLSAGLTDVLCRRHAFICRRSSANALDVQEWLSSVGYLFPETLARRVFQYFAQSGGLAWTVADLLRFLCSWVLDPRQEHVSMMFQ 329
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BLAST of mRNA_H-elongata_contig8651.16215.1 vs. uniprot
Match: A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.960e-28
Identity = 54/134 (40.30%), Postives = 82/134 (61.19%), Query Frame = 2 
Query:  215 PLLLWFRALCTQILHEPDPGVVALEERYNPGRDLNKVATKYKLPPVLVETLYRRHTMICRRSSTNSLDVQEWLSVVGYLIPEALGRRVFQFFAQSGGLAWTVADFITFLCVCVLDSRQEHASVMFQLFDVDRDG 616
            PL  WFR +C + + E DPGVVALE+RYNP R+L ++A KY++ P     L R+H  + ++     +D+  WLS+   ++   L  R F+ F++   + WTV+D++ F C  V  S  EH +++F LFD DRDG
Sbjct:  209 PLTQWFRIVCARSIEEADPGVVALEQRYNPERELARLARKYRILPAQQALLERKHMQLRQKGEAGRMDIGVWLSLAASVMHGDLAERCFRAFSRGPPMQWTVSDYVHFCCAAVRGSHHEHVTIVFNLFDDDRDG 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8651.16215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLB3_9PHAE9.810e-6475.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR49_ECTSI5.100e-5772.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVN1_9STRA1.960e-2840.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8651contigH-elongata_contig8651:5798..8566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.9e-50
Seed eggNOG ortholog2880.D8LR49
KEGG koko:K11837
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons6
Model size617
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931266.734183-UTR-H-elongata_contig8651:5797..58601622931266.734183-UTR-H-elongata_contig8651:5797..5860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8651 5798..5860 +
1691679766.12669-UTR-H-elongata_contig8651:5797..58601691679766.12669-UTR-H-elongata_contig8651:5797..5860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8651 5798..5860 +
1622931266.7491815-UTR-H-elongata_contig8651:6123..61271622931266.7491815-UTR-H-elongata_contig8651:6123..6127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8651 6124..6127 +
1691679766.136144-UTR-H-elongata_contig8651:6123..61271691679766.136144-UTR-H-elongata_contig8651:6123..6127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8651 6124..6127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931266.7653372-CDS-H-elongata_contig8651:6127..62471622931266.7653372-CDS-H-elongata_contig8651:6127..6247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 6128..6247 +
1691679766.1440237-CDS-H-elongata_contig8651:6127..62471691679766.1440237-CDS-H-elongata_contig8651:6127..6247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 6128..6247 +
1622931266.7789233-CDS-H-elongata_contig8651:6732..68671622931266.7789233-CDS-H-elongata_contig8651:6732..6867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 6733..6867 +
1691679766.1525116-CDS-H-elongata_contig8651:6732..68671691679766.1525116-CDS-H-elongata_contig8651:6732..6867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 6733..6867 +
1622931266.7949688-CDS-H-elongata_contig8651:7263..73651622931266.7949688-CDS-H-elongata_contig8651:7263..7365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 7264..7365 +
1691679766.1612773-CDS-H-elongata_contig8651:7263..73651691679766.1612773-CDS-H-elongata_contig8651:7263..7365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 7264..7365 +
1622931266.8154294-CDS-H-elongata_contig8651:7796..79641622931266.8154294-CDS-H-elongata_contig8651:7796..7964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 7797..7964 +
1691679766.172969-CDS-H-elongata_contig8651:7796..79641691679766.172969-CDS-H-elongata_contig8651:7796..7964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 7797..7964 +
1622931266.8353803-CDS-H-elongata_contig8651:8542..85661622931266.8353803-CDS-H-elongata_contig8651:8542..8566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 8543..8566 +
1691679766.1830852-CDS-H-elongata_contig8651:8542..85661691679766.1830852-CDS-H-elongata_contig8651:8542..8566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 8543..8566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8651.16215.1prot_H-elongata_contig8651.16215.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8651 6128..8566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8651.16215.1

>prot_H-elongata_contig8651.16215.1 ID=prot_H-elongata_contig8651.16215.1|Name=mRNA_H-elongata_contig8651.16215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
MMPGGRGISRSTTCGNSSMPSMGGNTPGRSTMGWSGSFLRGSAEAVQAEP
LLLWFRALCTQILHEPDPGVVALEERYNPGRDLNKVATKYKLPPVLVETL
YRRHTMICRRSSTNSLDVQEWLSVVGYLIPEALGRRVFQFFAQSGGLAWT
VADFITFLCVCVLDSRQEHASVMFQLFDVDRDG
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mRNA from alignment at H-elongata_contig8651:5798..8566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8651.16215.1 ID=mRNA_H-elongata_contig8651.16215.1|Name=mRNA_H-elongata_contig8651.16215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2769bp|location=Sequence derived from alignment at H-elongata_contig8651:5798..8566+ (Himanthalia elongata Himel1 dioecious)
ATTTGCGCCGTGGCCGTGATGGACGTGGGTACCGCCCGTGAACAACTGCG
AATGCTGTTTGAGGTACGCTCGATTGCATGATTTCGTAAAGGGTTAACTG
CTTCACGCGGCAGGCGATTCCCGCGACGAGAAACAACGCTATGCTATTAC
AAATCCCACGGCCCGTGCACGAGTCACACGGATCCAGGGTACAGGGTGCG
ATTTATGACCACTATATTTTAGTAAACATCACGAAGCATGACGACAATGA
GATGATGACCGACCTCTTGGCGTGGTAAGGCCTGACGCGGTTTAGCATTG
TACCCCATCACGTTCTCCCGCGCCAGGTGTATGATGCCCGGCGGACGGGG
TATATCGAGATCGACCACGTGCGGCAACTCCTCGATGCCATCTATGGGCG
GGAACACGCCAGGGCGGTCGACAATGGGCTGGAGTGGCTCTTTCTTGCGG
CGAGGTGATACCCTCAAAATGGTTTGGCAGAGGAGAGAACACTACTACTC
TCCACGAAACTTGATAATCGATGTGTGTTGCCTTTCAGGCCACTTGTTAG
CGGTTAGCTGATGATCGTGCCCTAGCAAGAAGGTCAGCCTTCGGTAGGAT
AGCGACCGGTCTCCAGTCTACCGTGAGCACGACTGATCCTTCCTCTCTCT
ATGCCGTCTGTGCATGCTATCGACTGTTGGCTATTGGCCCTTTGCTTCCT
CAGAGTCGCACGGAAGTCCTCGAGGTTTATCTTCGCTTAACAAAATCAAG
TAGTACTACGATTTTGAAAATTGGGTGGCGCAAGTGTGTGAGAGAACACT
GTGATAGCGAGGAGATATTTAACCACATAATCCTCTGCCCCCCGCTCGTC
CTATCTGACCGCTTGGAGCAGCCGCGATTATGGGATGGACGCCGAGGAGT
TCATTGGCCGGCTCAAGCCCGTTGTCGACTACCACGGCTCCGCGGAGGCT
GTGCAGGCGGAGCCGCTTTTACTGTGGTTTCGCGCCCTCTGCACGCAGAT
TCTCCATGAGCCCGACCCGGGTGTTGTGGCCTTGGAGGAAAGATACAACC
CGGGCAGAGATCTCAACAAGGTGAAAAGCCTGGGTTGACATGTGAAATTT
CCTCCCCGCGGCTGGGATATTCGGTCTCCGCCTTCCTTCCCGTTTCGAGG
ATTTGCAGGAGCGGCAACAACGATGTATAATTAGAGTCCCACAAACCAGA
AAAGAAACAAACGCGCGCGGCGAGGCATTTTGGTTTCGTTCGTCGTGGCG
ACGCGGGCGCTGCAAGGCGATGGATTTTCGTGGGCTGTCACGGTACCGCT
GTACGAGAAATTGCGAAGGTATCTCTTACCAGGCTGGTAGCTCCCGGTCA
ATTTGAATAATTTCGATAAAAATCGCTGCACCCTTCTGGGGCGATGCCTT
GCTGTTCGCTTCGTTTCCTTGTCCCTTTGGAATACGCGTTTGATGTTATT
TGATGGCTACGAAAAGGTGGCAACGAAGTACAAGTTACCACCTGTCCTCG
TGGAGACTCTGTACCGAAGGCACACCATGATCTGCCGACGAAGCTCGACC
AACTCGCTAGACGTTCAGGTGTGCCCTACCGTGCCGCACGGTAAAGGCGC
AAGGGTACTCTCGGATTGCTGAAACAGAGCTGGAGCAGTGTTGTCCATGG
CCGCACGGTCTTGCGAAACATTTTTTCTTCAATAACGGCGACTCCCTTTT
TTTCTTTTTCTTTTTCTTTTTCAAGTTGTACTCTACTGGATGTGCCTAAT
TTTCCTCTCCGCGGTGGCTGCTGCCTTTCGTCAGTTAAATGTTTAATTGG
GTAGGTAATGATTCCTGACGGCATGGGATTTGTTGCATTATACAGCTTCG
CAATCGCTGTATCACAGGACGTATGTGGAAATTTGAGGCAGGAAGCGGCA
TGCACGCTTTTTTACTTAACGGTCAAGCTCACCCCCCACTTTCTGCCTTC
GTCTGGATCGCTCCCGTCCACACCGACGTCATTTGTCCATTCCAAAAAGG
AATGGTTGTCCGTAGTGGGATACTTGATCCCGGAGGCGCTAGGGCGGCGA
GTGTTCCAGTTTTTCGCGCAGTCGGGCGGGCTGGCGTGGACGGTAGCGGA
CTTCATCACCTTCCTCTGCGTATGTGTGCTTGATTCTCGGCAAGAGCATG
CCTCTGTTATGTTCCAGGTGTGTGGTAGACCATGCCTCTGTCGTGTGTAT
CTTAGAAAAAAGAAATGCAAGAGCCTAGCCTAGCCTCGAACCTAGCCTAG
CCCGCGGTGACATACCCACCACAAAGAAAATATAATGACAAATTACCGTC
CAAGAGCATACTGATTGTGCCTTAGTGGGTGTGTGCGTTCGTGTTTGCTT
GCTTCATGAATGCTGGGATCCGCGATCCGCGTAGGTGATAAGGTGTGAGT
ATGTTTTGGGCGATAATTGCGGTGGGGTCCTAAAACTTCATTTGGTGTGT
GGACGTAGCGCTGAGTTGGGGTTGCGACTATATGATGGATTGTTCACGGG
TAAGGTGTTAGGATGACGGCGTGTACTGGCTTTATCGCCGGAATCTTGAG
CTTGTTTTCCCCCGCGTGCCGTAGCGTCGCCGACCCTCAACAGCCTCAGT
GTTGCGTACATTACGATTTTAAGGTTCTCGCAGAAATCGAGAAGAGAGCG
ACATGACGGAGTCGATCTTGACACTAGCAGTCCCTAACACCCTCTCTCAT
CCTCTGCTTTTGATGGGAAACGTACTGACCTCGCCTCATGGAAAGCTGTT
CGATGTCGACCGCGACGGG
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Coding sequence (CDS) from alignment at H-elongata_contig8651:5798..8566+

>mRNA_H-elongata_contig8651.16215.1 ID=mRNA_H-elongata_contig8651.16215.1|Name=mRNA_H-elongata_contig8651.16215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig8651:5798..8566+ (Himanthalia elongata Himel1 dioecious)
ATGATGCCCGGCGGACGGGGTATATCGAGATCGACCACGTGCGGCAACTC
CTCGATGCCATCTATGGGCGGGAACACGCCAGGGCGGTCGACAATGGGCT
GGAGTGGCTCTTTCTTGCGGATGATGCCCGGCGGACGGGGTATATCGAGA
TCGACCACGTGCGGCAACTCCTCGATGCCATCTATGGGCGGGAACACGCC
AGGGCGGTCGACAATGGGCTGGAGTGGCTCTTTCTTGCGGGGCTCCGCGG
AGGCTGTGCAGGCGGAGCCGCTTTTACTGTGGTTTCGCGCCCTCTGCACG
CAGATTCTCCATGAGCCCGACCCGGGTGTTGTGGCCTTGGAGGAAAGATA
CAACCCGGGCAGAGATCTCAACAAGGGCTCCGCGGAGGCTGTGCAGGCGG
AGCCGCTTTTACTGTGGTTTCGCGCCCTCTGCACGCAGATTCTCCATGAG
CCCGACCCGGGTGTTGTGGCCTTGGAGGAAAGATACAACCCGGGCAGAGA
TCTCAACAAGGTGGCAACGAAGTACAAGTTACCACCTGTCCTCGTGGAGA
CTCTGTACCGAAGGCACACCATGATCTGCCGACGAAGCTCGACCAACTCG
CTAGACGTTCAGGTGGCAACGAAGTACAAGTTACCACCTGTCCTCGTGGA
GACTCTGTACCGAAGGCACACCATGATCTGCCGACGAAGCTCGACCAACT
CGCTAGACGTTCAGGAATGGTTGTCCGTAGTGGGATACTTGATCCCGGAG
GCGCTAGGGCGGCGAGTGTTCCAGTTTTTCGCGCAGTCGGGCGGGCTGGC
GTGGACGGTAGCGGACTTCATCACCTTCCTCTGCGTATGTGTGCTTGATT
CTCGGCAAGAGCATGCCTCTGTTATGTTCCAGGAATGGTTGTCCGTAGTG
GGATACTTGATCCCGGAGGCGCTAGGGCGGCGAGTGTTCCAGTTTTTCGC
GCAGTCGGGCGGGCTGGCGTGGACGGTAGCGGACTTCATCACCTTCCTCT
GCGTATGTGTGCTTGATTCTCGGCAAGAGCATGCCTCTGTTATGTTCCAG
CTGTTCGATGTCGACCGCGACGGGCTGTTCGATGTCGACCGCGACGGG
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