mRNA_H-elongata_contig86476.16211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86476.16211.1
Unique NamemRNA_H-elongata_contig86476.16211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86476.16211.1 vs. uniprot
Match: D7FIK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK2_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 4.670e-45
Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 1 
Query:   22 QVVEACAVVISLAKLAISDQERPRDERAKLRAHCLTALRVRGKSHLAQNRIGLARKDARTMARSVWDAESRVQATTFDAEVERKAKILLKANRKLAKDVTRWVDASMAKHEE 357
            +VVEAC +V+SLA+L +  ++RPR+ERAKLRAHCLTALR+RG SHLAQ+ +G ARKDAR+M RS  D ESR QAT F+AEVERKAK LLK NRKLAKDVTRWVDASMAKHEE
Sbjct:  245 EVVEACTLVLSLARLTMGQKKRPREERAKLRAHCLTALRMRGGSHLAQHHVGQARKDARSMVRSSGDEESRAQATRFEAEVERKAKTLLKTNRKLAKDVTRWVDASMAKHEE 356
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BLAST of mRNA_H-elongata_contig86476.16211.1 vs. uniprot
Match: A0A6H5KE72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE72_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.210e-16
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   22 QVVEACAVVISLAKLAISDQERPRDERAKLRAHCLTALRVRGKSHLAQNRIGLARKDAR 198
            +VVEAC +V+SLA+L +  ++RPR+ERAKLRAHCLTALR+RG SHLAQ+ +G ARKDAR
Sbjct:  245 EVVEACTLVLSLARLTMGQKKRPREERAKLRAHCLTALRMRGGSHLAQHHVGQARKDAR 303
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BLAST of mRNA_H-elongata_contig86476.16211.1 vs. uniprot
Match: A0A835YM35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM35_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.730e-7
Identity = 35/93 (37.63%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:   94 DERAKLRAHCLTALRVRGKSHLAQNRIGLARKDARTMARSVW----DAESRVQATTFDAEVERKAKILLKANRKLAKDVTRWVDASMAKHEEA 360
            + R +L A CL AL +R ++HLA  R+  A +DA+ M ++      DA +R  A    +E++R  + LL+ +R+LA++V  WV+AS+ +H+EA
Sbjct:  220 EARRRLHALCLNALHLRARAHLAAARVKPALRDAQAMRKAAAGGADDAAARA-AERLVSEIKRAERALLRGDRRLAREVGAWVEASLKRHDEA 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86476.16211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIK2_ECTSI4.670e-4575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE72_9PHAE1.210e-1669.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YM35_9STRA4.730e-737.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86476contigH-elongata_contig86476:1636..2523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionElongated TPR repeat-containing domain
Ec32 orthologEc-27_000070.1
Exons2
Model size528
Cds size528
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.8526309-CDS-H-elongata_contig86476:1635..19661622931265.8526309-CDS-H-elongata_contig86476:1635..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86476 1636..1966 -
1691679765.8829155-CDS-H-elongata_contig86476:1635..19661691679765.8829155-CDS-H-elongata_contig86476:1635..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86476 1636..1966 -
1622931265.8723788-CDS-H-elongata_contig86476:2326..25231622931265.8723788-CDS-H-elongata_contig86476:2326..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86476 2327..2523 -
1691679765.8974268-CDS-H-elongata_contig86476:2326..25231691679765.8974268-CDS-H-elongata_contig86476:2326..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86476 2327..2523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86476.16211.1prot_H-elongata_contig86476.16211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86476 1636..2523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86476.16211.1

>prot_H-elongata_contig86476.16211.1 ID=prot_H-elongata_contig86476.16211.1|Name=mRNA_H-elongata_contig86476.16211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
MTCYFPFQVVEACAVVISLAKLAISDQERPRDERAKLRAHCLTALRVRGK
SHLAQNRIGLARKDARTMARSVWDAESRVQATTFDAEVERKAKILLKANR
KLAKDVTRWVDASMAKHEEASSSRVSGHELPSALSGPDQGDSKVGGGGVE
ESKGGECASRASGGVGKSWFGSWLR*
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mRNA from alignment at H-elongata_contig86476:1636..2523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86476.16211.1 ID=mRNA_H-elongata_contig86476.16211.1|Name=mRNA_H-elongata_contig86476.16211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at H-elongata_contig86476:1636..2523- (Himanthalia elongata Himel1 dioecious)
ATGACATGTTATTTCCCATTTCAGGTTGTGGAGGCGTGTGCCGTGGTGAT
AAGCTTGGCCAAGCTTGCGATTTCGGATCAAGAGCGCCCGCGAGACGAAA
GGGCCAAGCTTCGGGCGCACTGCCTGACCGCTCTCCGTGTGAGGGGCAAG
AGCCACCTAGCTCAGAATCGCATCGGTCTGGCTCGAAAAGACGCGAGGTA
TAGCTTCAGAGGTCGCTTTTAGGCCATATGCCCCCACCCCGCAAAATACG
AGAACCACGTTGGCCTCCGCCACGCACCTAGCTTCTGCTTTTATCAGAAC
ACGCGTTGAGTAGGCCGCCAAGCTAGCTCTACGCTAGAAGAATGTTTTTC
GAGATCTGCACTATATTACAGTATACATTGTAGTGAGTAGCTCCCGCGCC
GCGCTCTGCACGAAAACCGCCTTTGCTCAAGCGAAAATTACTCCTGCTCA
AAAGGGCGCACGGAAAAGATTAGGTACACAGAGAAAACCTGAAAAATCCT
TCACCGTTAGAGGTGCTCAGGTACCCGATATCCCGATCCCGATGACCGCC
TGTGCAGGACAATGGCGCGCTCCGTCTGGGACGCCGAGAGCAGAGTGCAA
GCGACTACCTTTGATGCCGAGGTGGAGAGGAAGGCCAAAATCCTGTTAAA
AGCTAACCGCAAGCTGGCGAAAGACGTCACGCGGTGGGTGGACGCAAGCA
TGGCTAAACACGAGGAGGCATCTTCCAGCAGGGTGTCCGGGCATGAGCTG
CCGTCGGCCCTGAGCGGCCCCGACCAAGGAGATAGTAAAGTGGGGGGAGG
CGGGGTTGAGGAGAGCAAGGGAGGCGAGTGCGCGAGCAGGGCTAGCGGAG
GGGTAGGAAAGTCATGGTTCGGAAGCTGGCTCCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig86476:1636..2523-

>mRNA_H-elongata_contig86476.16211.1 ID=mRNA_H-elongata_contig86476.16211.1|Name=mRNA_H-elongata_contig86476.16211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig86476:1636..2523- (Himanthalia elongata Himel1 dioecious)
ATGACATGTTATTTCCCATTTCAGGTTGTGGAGGCGTGTGCCGTGGTGAT
AAGCTTGGCCAAGCTTGCGATTTCGGATCAAGAGCGCCCGCGAGACGAAA
GGGCCAAGCTTCGGGCGCACTGCCTGACCGCTCTCCGTGTGAGGGGCAAG
AGCCACCTAGCTCAGAATCGCATCGGTCTGGCTCGAAAAGACGCGAGATG
ACATGTTATTTCCCATTTCAGGTTGTGGAGGCGTGTGCCGTGGTGATAAG
CTTGGCCAAGCTTGCGATTTCGGATCAAGAGCGCCCGCGAGACGAAAGGG
CCAAGCTTCGGGCGCACTGCCTGACCGCTCTCCGTGTGAGGGGCAAGAGC
CACCTAGCTCAGAATCGCATCGGTCTGGCTCGAAAAGACGCGAGGACAAT
GGCGCGCTCCGTCTGGGACGCCGAGAGCAGAGTGCAAGCGACTACCTTTG
ATGCCGAGGTGGAGAGGAAGGCCAAAATCCTGTTAAAAGCTAACCGCAAG
CTGGCGAAAGACGTCACGCGGTGGGTGGACGCAAGCATGGCTAAACACGA
GGAGGCATCTTCCAGCAGGGTGTCCGGGCATGAGCTGCCGTCGGCCCTGA
GCGGCCCCGACCAAGGAGATAGTAAAGTGGGGGGAGGCGGGGTTGAGGAG
AGCAAGGGAGGCGAGTGCGCGAGCAGGGCTAGCGGAGGGGTAGGAAAGTC
ATGGTTCGGAAGCTGGCTCCGATGAGACAATGGCGCGCTCCGTCTGGGAC
GCCGAGAGCAGAGTGCAAGCGACTACCTTTGATGCCGAGGTGGAGAGGAA
GGCCAAAATCCTGTTAAAAGCTAACCGCAAGCTGGCGAAAGACGTCACGC
GGTGGGTGGACGCAAGCATGGCTAAACACGAGGAGGCATCTTCCAGCAGG
GTGTCCGGGCATGAGCTGCCGTCGGCCCTGAGCGGCCCCGACCAAGGAGA
TAGTAAAGTGGGGGGAGGCGGGGTTGAGGAGAGCAAGGGAGGCGAGTGCG
CGAGCAGGGCTAGCGGAGGGGTAGGAAAGTCATGGTTCGGAAGCTGGCTC
CGATGA
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