mRNA_H-elongata_contig86468.16210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86468.16210.1
Unique NamemRNA_H-elongata_contig86468.16210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: A0A6H5L0V1_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 9.340e-39
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ 186
            PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ
Sbjct:   64 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ 125
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: A0A835ZQ60_9STRA (Ubiquitin-conjugating enzyme e2-16kda, ubiquitin protein ligase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ60_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.020e-38
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ 186
            PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ
Sbjct:   64 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ 125
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: D8LQX5_ECTSI (UBC core domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX5_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.080e-38
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ 186
            PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ
Sbjct:   64 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ 125
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: B8C0C0_THAPS (Ubiquitin-conjugating enzyme e2-16kda, ubiquitin protein ligase n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8C0C0_THAPS)

HSP 1 Score: 130 bits (328), Expect = 1.190e-37
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQV 189
            PPKV+FTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP+IAQ+
Sbjct:   64 PPKVHFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPDIAQL 126
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: A0A7S2CNF0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNF0_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.680e-37
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQ 186
            PPKV+FTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIA+
Sbjct:   64 PPKVSFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAE 125
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: A0A6T8L654_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8L654_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.870e-37
Identity = 58/63 (92.06%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQV 189
            PPK++FTTRIYHCNINSNGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPLVP+IAQ+
Sbjct:   44 PPKIHFTTRIYHCNINSNGGICLDILKDQWSPALTLSKVLLSICSLLTDPNPDDPLVPDIAQL 106
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: A0A397APW7_9STRA (UBC core domain-containing protein n=15 Tax=Stramenopiles TaxID=33634 RepID=A0A397APW7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.710e-37
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQV 189
            PPKVNFTTRIYHCNIN+NGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+
Sbjct:   91 PPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQI 153
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: M4BZ46_HYAAE (UBC core domain-containing protein n=27 Tax=Stramenopiles TaxID=33634 RepID=M4BZ46_HYAAE)

HSP 1 Score: 130 bits (327), Expect = 4.530e-37
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQV 189
            PPKVNFTTRIYHCNIN+NGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+
Sbjct:   64 PPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQI 126
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: A0A7S2BUY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BUY0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 9.700e-37
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQV 189
            PPKV FTT+IYHCNIN+NGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAQ+
Sbjct:   64 PPKVAFTTKIYHCNINANGGICLDILKDQWSPALTLSKVLLSICSLLTDPNPDDPLVPEIAQI 126
[Close]
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Match: A0A6G0WK77_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WK77_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.020e-36
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQV 189
            PPKVNFTTRIYHCNIN+NGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+
Sbjct:   95 PPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQI 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86468.16210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0V1_9PHAE9.340e-39100.00UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZQ60_9STRA1.020e-38100.00Ubiquitin-conjugating enzyme e2-16kda, ubiquitin p... [more]
D8LQX5_ECTSI1.080e-38100.00UBC core domain-containing protein (Fragment) n=1 ... [more]
B8C0C0_THAPS1.190e-3795.24Ubiquitin-conjugating enzyme e2-16kda, ubiquitin p... [more]
A0A7S2CNF0_9STRA1.680e-3796.77Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6T8L654_9STRA1.870e-3792.06Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A397APW7_9STRA3.710e-3795.24UBC core domain-containing protein n=15 Tax=Strame... [more]
M4BZ46_HYAAE4.530e-3795.24UBC core domain-containing protein n=27 Tax=Strame... [more]
A0A7S2BUY0_9STRA9.700e-3792.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0WK77_9STRA2.020e-3695.24UBC core domain-containing protein n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86468contigH-elongata_contig86468:435..1431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue8.2e-30
Seed eggNOG ortholog2880.D8LQX5
Preferred nameUBC4
KEGG rclassRC00052,RC00156
KEGG koko:K00252,ko:K06689,ko:K10746
KEGG ReactionR02487,R02488,R10074
KEGG Pathwayko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,ko03430,ko04013,ko04120,ko04141,ko04624,map00071,map00310,map00362,map00380,map01100,map01120,map01130,map03430,map04013,map04120,map04141,map04624
KEGG ModuleM00032
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000502,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007088,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010559,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0016485,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030071,GO:0030163,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031331,GO:0031399,GO:0031461,GO:0032182,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032933,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034605,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0042221,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051604,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051983,GO:0051984,GO:0060049,GO:0060090,GO:0060255,GO:0061631,GO:0061650,GO:0062033,GO:0065007,GO:0070647,GO:0070887,GO:0071218,GO:0071310,GO:0071501,GO:0071629,GO:0071704,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903018,GO:1903052,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2001141,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC1.3.8.6,2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.7862427-CDS-H-elongata_contig86468:434..5091622931265.7862427-CDS-H-elongata_contig86468:434..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86468 435..509 -
1691679765.8607514-CDS-H-elongata_contig86468:434..5091691679765.8607514-CDS-H-elongata_contig86468:434..509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86468 435..509 -
1622931265.8058193-CDS-H-elongata_contig86468:1317..14311622931265.8058193-CDS-H-elongata_contig86468:1317..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86468 1318..1431 -
1691679765.8728294-CDS-H-elongata_contig86468:1317..14311691679765.8728294-CDS-H-elongata_contig86468:1317..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86468 1318..1431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86468.16210.1prot_H-elongata_contig86468.16210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86468 435..1431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86468.16210.1

>prot_H-elongata_contig86468.16210.1 ID=prot_H-elongata_contig86468.16210.1|Name=mRNA_H-elongata_contig86468.16210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
PPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDP
NPDDPLVPEIAQV
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mRNA from alignment at H-elongata_contig86468:435..1431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86468.16210.1 ID=mRNA_H-elongata_contig86468.16210.1|Name=mRNA_H-elongata_contig86468.16210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=997bp|location=Sequence derived from alignment at H-elongata_contig86468:435..1431- (Himanthalia elongata Himel1 dioecious)
CCGCCCAAGGTGAACTTCACGACGAGGATCTACCACTGCAACATCAACAG
CAACGGAGGAATCTGCTTAGACATCCTCAAAGACCAGTGGTCTCCCGCTC
TCACAATCTCCAAGGTGGGTGTTAGGATAGAGCAAGAGCAATGTTTAGAA
ATAGAAACCACTCTGTTTTCACACATATTTAAGTGGCGCGGGTTGCTTTC
AGTTATGATTTCATGGAGTTGGGGGGTGGGGGGAGTGGAGCGTTTCCGGT
TTTTGAGTTTTTGAAAAATCAAGGATTTTGATGCATCATCATGTGCTATA
AACTCAAAACGAATATTCTCTTCTGGTTTGCGTTGTGTTGTGTTTTCTCA
AGAATACATTAAACTTACGCGTGTGGGAATCGTGGAGGTTTTTGTTTTGC
GGTGGATCTTGGCGGCTACAGTGCTAGTTACTGTAGTTGTATCATGTTCA
ACTGCCACAATGCTGCATCGTACCGTTAGAAATGCTGTCACAAAATTGTT
GTGTATTCAGAATTCCGAACTTGTAACTCGATCTGTTTTTTACATTCTAA
ATTCAATACAAAAGTTAAAATCCAGTTTCAAAAGGGTTAAAAGCTCAGCA
GTCTAAAGCCCTTGGTTGTACATTGGTACGAGGATGTTTTGGTTTAACCC
TTCTGGAACTGGATTTCAAGTTTTATCTTGAATTTAGTATGTAAAAAAAC
AGATCGAGTTCTATAGGGTTTTAATATTAGGGGGAGGGGTAGTTGGTTGA
CTCCCGCAGCGGTGGTGGGAAAAGGATTTCTACAAGAAGTAGATTTTAGA
TGATGGTGTTGGGGTCTGACGAAAGAGCAAAAATCGATAAATAAAAAAAT
GGTGTATTTAACGGTGGTCGTAGTCACTCACTTTGTCTCTTCTGTCGGCT
AACCGTTTCTCATTCCTTCAAGGTGCTGTTGTCTATATGTTCGCTGCTGA
CCGACCCCAATCCGGACGACCCGCTGGTTCCAGAGATCGCACAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig86468:435..1431-

>mRNA_H-elongata_contig86468.16210.1 ID=mRNA_H-elongata_contig86468.16210.1|Name=mRNA_H-elongata_contig86468.16210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig86468:435..1431- (Himanthalia elongata Himel1 dioecious)
CCGCCCAAGGTGAACTTCACGACGAGGATCTACCACTGCAACATCAACAG
CAACGGAGGAATCTGCTTAGACATCCTCAAAGACCAGTGGTCTCCCGCTC
TCACAATCTCCAAGCCGCCCAAGGTGAACTTCACGACGAGGATCTACCAC
TGCAACATCAACAGCAACGGAGGAATCTGCTTAGACATCCTCAAAGACCA
GTGGTCTCCCGCTCTCACAATCTCCAAGGTGCTGTTGTCTATATGTTCGC
TGCTGACCGACCCCAATCCGGACGACCCGCTGGTTCCAGAGATCGCACAG
GTGGTGCTGTTGTCTATATGTTCGCTGCTGACCGACCCCAATCCGGACGA
CCCGCTGGTTCCAGAGATCGCACAGGTG
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