mRNA_H-elongata_contig86447.16209.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: D7FTN4_ECTSI (DBR1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTN4_ECTSI) HSP 1 Score: 209 bits (532), Expect = 8.020e-64 Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 1
Query: 1 NVLLVFRFSLSTQRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYNGR 354
N ++RF ST + GIKVDLLICCGDFQCLRNTQDF GL CPDKYK LGTFHKYYSGELV PVLTIFIGGNHEASSYLQELHYGGWVAP IYF+GFAGV+RVGGVRIAG+TGI+NGR
Sbjct: 6 NASFLWRFFRSTIK-GIKVDLLICCGDFQCLRNTQDFDGLACPDKYKHLGTFHKYYSGELVAPVLTIFIGGNHEASSYLQELHYGGWVAPNIYFLGFAGVVRVGGVRIAGMTGIFNGR 122
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: A0A8J5UPL3_9HYME (Uncharacterized protein n=3 Tax=Cotesia TaxID=32390 RepID=A0A8J5UPL3_9HYME) HSP 1 Score: 163 bits (413), Expect = 7.760e-47 Identity = 74/114 (64.91%), Postives = 94/114 (82.46%), Query Frame = 1
Query: 10 LVFRFSLSTQRQ-GIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYN 348
+++ + T++ G KVDLLICCGDFQ +RNT+D + + PDKYK+L +FHKYYSGE PVLTIFIGGNHEAS+YLQEL YGGWVAP IY+MG+AGV+ VGG+RIAG++GI+
Sbjct: 15 IIYDILMDTEKTTGKKVDLLICCGDFQSVRNTEDLKYMAVPDKYKELCSFHKYYSGEKTAPVLTIFIGGNHEASNYLQELPYGGWVAPNIYYMGYAGVLNVGGIRIAGISGIFK 128
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: A0A060XP48_ONCMY (Metallophos domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060XP48_ONCMY) HSP 1 Score: 156 bits (394), Expect = 8.120e-47 Identity = 69/105 (65.71%), Postives = 87/105 (82.86%), Query Frame = 1
Query: 37 QRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYNG 351
Q++G+KVDLL+CCGDFQ +RN D + + P KY+++ TF+KYYSGE PVLTIFIGGNHEAS++LQEL YGGWVAP IY+MG+AGV+R GVRI GL+GI+ G
Sbjct: 25 QKEGVKVDLLLCCGDFQAVRNEGDMKCMAVPQKYRQMQTFYKYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYMGYAGVVRYKGVRIGGLSGIFKG 129
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: UPI0007638A51 (lariat debranching enzyme-like n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI0007638A51) HSP 1 Score: 160 bits (405), Expect = 9.580e-47 Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 1
Query: 28 LSTQRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYN 348
L +R IKVDLLICCGDFQ RNT+D + P KY+++ +FHKYYSGELV P+LTIFIGGNHEAS++LQEL YGGW AP IY+MG AGVI VGG+RI GL+GIY
Sbjct: 22 LIEKRDNIKVDLLICCGDFQATRNTEDLLAMAVPLKYRQMCSFHKYYSGELVXPILTIFIGGNHEASNHLQELSYGGWAAPNIYYMGLAGVINVGGIRIGGLSGIYK 128
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: A0A6L2Q6U8_COPFO (Uncharacterized protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2Q6U8_COPFO) HSP 1 Score: 160 bits (404), Expect = 9.770e-47 Identity = 71/105 (67.62%), Postives = 87/105 (82.86%), Query Frame = 1
Query: 37 QRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYNG 351
++ GIKVDLLICCGDFQ RN +D + + P KY+K+ TF+KYYSGE + PVLTIFIGGNHEAS+YLQEL YGGWVAP+IY+MG+A V+ V GVR+ GL+GIY G
Sbjct: 25 KKDGIKVDLLICCGDFQATRNKEDLKCMAVPQKYQKMCTFYKYYSGEKLAPVLTIFIGGNHEASNYLQELPYGGWVAPRIYYMGYASVVNVAGVRVGGLSGIYKG 129
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: UPI001AEB4834 (LOW QUALITY PROTEIN: lariat debranching enzyme-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AEB4834) HSP 1 Score: 164 bits (416), Expect = 3.110e-46 Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 1
Query: 37 QRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYN 348
+R KVDLL+CCGDFQ +RN +D + + CPDKYK G+F+KYYSGELV P+LTIFIGGNHEAS+YLQEL YGGWVAPKIYF+G A VI VGG+RI G++GIY
Sbjct: 25 KRHKYKVDLLLCCGDFQSVRNLEDLKTMACPDKYKSAGSFYKYYSGELVAPILTIFIGGNHEASNYLQELPYGGWVAPKIYFLGKASVINVGGIRIGGISGIYK 128
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: A0A836CF65_9STRA (Putative RNA lariat debranching enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF65_9STRA) HSP 1 Score: 161 bits (408), Expect = 3.860e-46 Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 1
Query: 46 GIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYNGR 354
IKVDLL+CCGDFQ LR+ DF+G+ P ++ L +FH YY G V PVLTIFIGGNHEAS+YLQELHYGGWVAP IYF+GF+GV+ VGG+RI GLTGIYN R
Sbjct: 29 SIKVDLLLCCGDFQSLRDAGDFEGMAVPAHHRHLASFHDYYHGRKVAPVLTIFIGGNHEASNYLQELHYGGWVAPNIYFLGFSGVVNVGGIRIGGLTGIYNHR 131
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: A0A8D8LCZ1_9HEMI (Lariat debranching enzyme n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8LCZ1_9HEMI) HSP 1 Score: 155 bits (393), Expect = 4.080e-46 Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1
Query: 25 SLSTQRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYNG 351
+L QR+ KVDLLICCGDFQ RN +D + CP KY+ + +F+KYYSGE P+LTIFIGGNHEASSYLQEL YGGWVAP I+++G+AGV+ +GG+RI G++GI G
Sbjct: 21 ALIEQRENFKVDLLICCGDFQSTRNAEDLACMACPPKYRDMCSFYKYYSGEKQAPILTIFIGGNHEASSYLQELSYGGWVAPNIFYLGYAGVVNIGGLRIGGISGIQKG 129
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: A0A7J9LR96_GOSSC (Metallophos domain-containing protein n=5 Tax=Gossypium TaxID=3633 RepID=A0A7J9LR96_GOSSC) HSP 1 Score: 154 bits (389), Expect = 4.540e-46 Identity = 67/104 (64.42%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 43 QGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYNGR 354
+ IK+DLL+CCGDFQ +RN +D LN P KY+++ +F KYYSG+ V PV TIFIGGNHEAS+YL EL+YGGW AP IYF+GFAGV++ G +RI GL+GIYN R
Sbjct: 27 RNIKIDLLLCCGDFQAVRNEKDMDSLNVPPKYREMKSFWKYYSGQEVAPVPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYNAR 130
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Match: A0A0K9NIB8_ZOSMR (Lariat debranching enzyme n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NIB8_ZOSMR) HSP 1 Score: 162 bits (410), Expect = 4.810e-46 Identity = 67/104 (64.42%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 37 QRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGTFHKYYSGELVVPVLTIFIGGNHEASSYLQELHYGGWVAPKIYFMGFAGVIRVGGVRIAGLTGIYN 348
+R+ +K+DLLICCGDFQ +RN +D + LNCP Y+K+ +FHKYYSG+L+ P TIFIGGNHEAS+YL EL+YGGW AP IYF+GFAG+I+ G +RI GL+GIY
Sbjct: 25 RRENVKIDLLICCGDFQSVRNEEDLKSLNCPPNYRKMNSFHKYYSGDLIAPFPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGIIKFGNIRIGGLSGIYK 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86447.16209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86447.16209.1 >prot_H-elongata_contig86447.16209.1 ID=prot_H-elongata_contig86447.16209.1|Name=mRNA_H-elongata_contig86447.16209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp NVLLVFRFSLSTQRQGIKVDLLICCGDFQCLRNTQDFQGLNCPDKYKKLGback to top mRNA from alignment at H-elongata_contig86447:780..2543+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86447.16209.1 ID=mRNA_H-elongata_contig86447.16209.1|Name=mRNA_H-elongata_contig86447.16209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1764bp|location=Sequence derived from alignment at H-elongata_contig86447:780..2543+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86447:780..2543+ >mRNA_H-elongata_contig86447.16209.1 ID=mRNA_H-elongata_contig86447.16209.1|Name=mRNA_H-elongata_contig86447.16209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig86447:780..2543+ (Himanthalia elongata Himel1 dioecious)back to top |