mRNA_H-elongata_contig86439.16207.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86439.16207.1
Unique NamemRNA_H-elongata_contig86439.16207.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86439.16207.1 vs. uniprot
Match: D8LHY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY2_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.200e-29
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 KVLESVDPSFSMDNEQGDTYETGEELRVPTDINVEGVELIASYWHADQEYALVKHLDPVFAIARQTTIGYYLLGAEEAAAVKPKVEQMLLQEV 279
            +VLE  D S+  + E        E++RVPTDI  EGVELIASYW+ D+EYALVKHLDPVF IARQT  GYYLLG EEAAAVKPKVE MLL+E+
Sbjct:  269 EVLEEGDGSYPTEEEXX-----XEDVRVPTDITAEGVELIASYWYEDKEYALVKHLDPVFVIARQTKNGYYLLGEEEAAAVKPKVEAMLLEEI 356
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BLAST of mRNA_H-elongata_contig86439.16207.1 vs. uniprot
Match: K9QAN5_9NOSO (Uncharacterized protein n=12 Tax=Cyanobacteria TaxID=1117 RepID=K9QAN5_9NOSO)

HSP 1 Score: 49.7 bits (117), Expect = 4.140e-5
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   88 TDINVEGVELIASYWHADQEYALVKHLDPVFAIARQTTIGY-YLLGAEEAAAVKPKVEQMLLQEV 279
            TD+  E ++L+AS++H +QEYA+   LDP+   AR T  G   LL  EE   V+P +E+ L  EV
Sbjct:  125 TDLEPEQLQLLASFYHEEQEYAIYTPLDPLLFFARITKEGNPELLSPEEFRQVQPLLEEQLFNEV 189
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BLAST of mRNA_H-elongata_contig86439.16207.1 vs. uniprot
Match: A0A1Z4UUG0_9CYAN (Uncharacterized protein n=4 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A1Z4UUG0_9CYAN)

HSP 1 Score: 49.3 bits (116), Expect = 5.750e-5
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   88 TDINVEGVELIASYWHADQEYALVKHLDPVFAIARQTTIGY-YLLGAEEAAAVKPKVEQMLLQEV 279
            TD+  E ++L+AS++H DQEYA+   LDP+   AR T  G   LL  EE   V+P +E+ L  +V
Sbjct:  125 TDLEPEQLQLLASFYHQDQEYAVYTPLDPLLFFARITKSGKPELLSPEEFRKVQPLLEEHLFDQV 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86439.16207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHY2_ECTSI1.200e-2966.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K9QAN5_9NOSO4.140e-543.08Uncharacterized protein n=12 Tax=Cyanobacteria Tax... [more]
A0A1Z4UUG0_9CYAN5.750e-543.08Uncharacterized protein n=4 Tax=Sphaerospermopsis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86439contigH-elongata_contig86439:578..2629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionProtein of unknown function DUF3727
Ec32 orthologEc-18_000930.1
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86439.16207.1prot_H-elongata_contig86439.16207.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86439 578..2629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.5653858-CDS-H-elongata_contig86439:577..6161622931265.5653858-CDS-H-elongata_contig86439:577..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86439 578..616 -
1691679765.7615933-CDS-H-elongata_contig86439:577..6161691679765.7615933-CDS-H-elongata_contig86439:577..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86439 578..616 -
1622931265.5775938-CDS-H-elongata_contig86439:1219..13281622931265.5775938-CDS-H-elongata_contig86439:1219..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86439 1220..1328 -
1691679765.7742825-CDS-H-elongata_contig86439:1219..13281691679765.7742825-CDS-H-elongata_contig86439:1219..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86439 1220..1328 -
1622931265.589534-CDS-H-elongata_contig86439:2498..26291622931265.589534-CDS-H-elongata_contig86439:2498..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86439 2499..2629 -
1691679765.78375-CDS-H-elongata_contig86439:2498..26291691679765.78375-CDS-H-elongata_contig86439:2498..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86439 2499..2629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86439.16207.1

>prot_H-elongata_contig86439.16207.1 ID=prot_H-elongata_contig86439.16207.1|Name=mRNA_H-elongata_contig86439.16207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
KVLESVDPSFSMDNEQGDTYETGEELRVPTDINVEGVELIASYWHADQEY
ALVKHLDPVFAIARQTTIGYYLLGAEEAAAVKPKVEQMLLQEV
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mRNA from alignment at H-elongata_contig86439:578..2629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86439.16207.1 ID=mRNA_H-elongata_contig86439.16207.1|Name=mRNA_H-elongata_contig86439.16207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2052bp|location=Sequence derived from alignment at H-elongata_contig86439:578..2629- (Himanthalia elongata Himel1 dioecious)
AAGGTTTTGGAAAGCGTGGATCCGTCTTTTAGTATGGATAACGAGCAGGG
AGATACGTACGAGACTGGCGAAGAACTTCGGGTCCCCACCGACATCAACG
TGGAAGGCGTCGAACTCATCGCTTCTTATTGGTGCGTTAGTATTAATTAA
TACAGTTACTAATACTATTACTGTTGACATTATTAGTATCAGTACCGTTA
CTATTGCTGTTACTATTACCGTTACCGTTGATTTGACGGTTGTTATTACC
GTTGTGGTTATCATTACCGTTACCGTTACCAATACCGTTAGGGGGGCTAT
TACCGTTACTTTTTGTGGTTAAAAATGTCGTTAATGTTATAGTTGCAGTT
GCCATTATGGTTACTTATACGATTAATGTTACATTTACCGTTAATATAAC
TATTAGGGTCTGGTTAATAATACTTGAACCGTTACCGTTTATAACAATAG
CACCATTACTATTGTGGTTACTTGTACTATAAATATTACCGTTACCATTA
CCGTTGCCATAATCTGAAATCTGAAATCGTACAGCGTTCGATACGAGTAG
CCCCTGCGCGTATTGGAAGAAGAGTGAGTTTAGTGTAACCCCTAATATAT
ACTGAAGTAGTACCCCTAACCCCTATATTGAAGTTGCGACGATCGAAGCT
AGTACTGGGATTTTTGTGAGGAGACCTCTGAGGGACCAGATGACGGTCAT
GGATAACACCCTCGGGGTGCGGTAGGCTTCCGTAGCGACTCTATAATTTC
CACCATAGTTTCCGCCACGATTTCCTCTACCATTCCTTCTTTTTCCTCAA
CAGGCGCATTAGTATTAGCATTAGTATTAGCATTAGTATTAGGGTTATTA
TTATCATTCGACGGAGAGGCAATACGATTTTCAGCAGAGTAAATGGATTA
GGAATTCTCAAGTCCCTTGCACCAGCATGCTCTCGATGAATGTGCTAAAT
TGGTAATATTACTAACCCTAACCCTAACCCTATTACTAACCCTAATACTA
ATACTATTAATGACTCCTACCTGTATTAATAACCCTAACCCTAACCCTAT
TACTAATACTATTAATGACTCCTACCTGTATTAATAACCCTAACCCTATT
ACTAACCCTAATACAAATACTATTAATGACTCCTACCTGTATTAATAACC
CTAACCCTAACTATTGATAGATATGTGGTGGTTAAGTGTTCTAACGGCCT
AACCGATCACATATGATATATTTGTTGATATTTTTATCTTTTTTTATATT
TATTGATATTTGTCCGACAAACATGCCATTAATATTATTATTTTGGAGCA
GGCACGCCGACCAGGAGTACGCGCTCGTCAAGCATCTCGACCCTGTGTTT
GCGATCGCTAGGCAGACCACGATTGGATATTACCTCTTGGGGGCTGAGGA
AGCGGCAGCGGTGAGAATTAGAGAATCATATGGAAATGGGCCTTGCCGAC
AGCGTACATCGTTCATGCCGATTCGAGATTGTAATGTTTTTAGAGTGTTT
TAAAAGTTTACGTGCGGATTGTAAGGTTAGGGTTAGGGTTAGGGTAGCTT
TGTTTTGAAGAGCACAGACAGAGGCAGGCTCCTATTGTATCTTCCTTTTT
TTTAGATCGCATGTCCATTGTATCTTCATTTGAAATATATTTTTGTCCGG
GGCTGTTGATGTTGATGTTGCTGTCGTTCTTGTGAATATTTCGGGTAACT
CTCCTCTTCAAGACGTGTATCGTGTACAGCCAGTCCGTCGTGAATAGATG
ACGCCTCTGACGCGAGCTCAGAGAGGCTCAGAGGGACGAGAGAGATGACG
AAGGAGCTTCATTATTGATGCCTCCCGAAGATTACGTTAGCGCCGGCCTT
TGTTTTCCTTTATGTGCTGGATGAAACTTTTAAATAAAAATAAAGGATAA
CTGTTCCATAACCTTCACGATACTAATACCAATACCAATACTAATACCAA
TACTAATACCAATACTAATACCAGTATTATCATCACCCCATGCTATTACG
ATACTAATATCAGGTAAAACCCAAGGTGGAGCAGATGTTGCTCCAGGAGG
TC
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Coding sequence (CDS) from alignment at H-elongata_contig86439:578..2629-

>mRNA_H-elongata_contig86439.16207.1 ID=mRNA_H-elongata_contig86439.16207.1|Name=mRNA_H-elongata_contig86439.16207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig86439:578..2629- (Himanthalia elongata Himel1 dioecious)
AAGGTTTTGGAAAGCGTGGATCCGTCTTTTAGTATGGATAACGAGCAGGG
AGATACGTACGAGACTGGCGAAGAACTTCGGGTCCCCACCGACATCAACG
TGGAAGGCGTCGAACTCATCGCTTCTTATTGAAGGTTTTGGAAAGCGTGG
ATCCGTCTTTTAGTATGGATAACGAGCAGGGAGATACGTACGAGACTGGC
GAAGAACTTCGGGTCCCCACCGACATCAACGTGGAAGGCGTCGAACTCAT
CGCTTCTTATTGGCACGCCGACCAGGAGTACGCGCTCGTCAAGCATCTCG
ACCCTGTGTTTGCGATCGCTAGGCAGACCACGATTGGATATTACCTCTTG
GGGGCTGAGGAAGCGGCAGCGGCACGCCGACCAGGAGTACGCGCTCGTCA
AGCATCTCGACCCTGTGTTTGCGATCGCTAGGCAGACCACGATTGGATAT
TACCTCTTGGGGGCTGAGGAAGCGGCAGCGGTAAAACCCAAGGTGGAGCA
GATGTTGCTCCAGGAGGTCGTAAAACCCAAGGTGGAGCAGATGTTGCTCC
AGGAGGTC
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