mRNA_H-elongata_contig86374.16204.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.760e-33 Identity = 80/197 (40.61%), Postives = 111/197 (56.35%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPE-GLKIGIIRTDGGGEWHSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVALLRGVME-----GKSARLWAEAMAYACDMWNRCTSSSLDSG-TSPYKLWYGRRP 570
C+ CS S+ + + KST+ RA + LF++L G S+ GN + ++ D+ TR+ FLKHKSDA A + DY A ++ + RTDGGGE+ QF R+ GIK E TPP P+YNGV ERALGLL D +A E S LWAEA++ AC N CT+++ + G SP +L++G P
Sbjct: 169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPP 364
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.390e-30 Identity = 71/199 (35.68%), Postives = 108/199 (54.27%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS ++ +P T RA ++ +F+DLSG SL G + ++ D++TR+ FLKHKSDA A + + A + ++R+D GGE+ +F RK IK E TP + P+Y+GV ERALGL+ D +A L G S LWAEA+A++C+ N +++S SPY++W+G P
Sbjct: 9 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 205
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.760e-29 Identity = 71/199 (35.68%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS ++ +P T RA ++ F++LSG SL G + ++ D++TR+ FLKHKSDA A + + A + ++R+D GGE+ +F RK IK E TP + P+YNGV ERALGL++D +A L G +S LWAEA+A++C+ N +++S SPY++W+G P
Sbjct: 341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 537
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 122 bits (307), Expect = 6.260e-29 Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS ++ +P T RA ++ +F+DLSG SL G + ++ D++TR+ FLKHKSDA A + + A + ++R+D GGE+ +F RK IK E TP + P+YNGV ERALGL++D +A L G S LWAEA+A++C+ N +++S SPY++W+G P
Sbjct: 708 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 904
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 122 bits (307), Expect = 6.290e-29 Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS ++ +P T RA ++ +F+DLSG SL G + ++ D++TR+ FLKHKSDA A + + A + ++R+D GGE+ +F RK IK E TP + P+YNGV ERALGL++D +A L G S LWAEA+A++C+ N +++S SPY++W+G P
Sbjct: 543 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 739
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 122 bits (307), Expect = 6.310e-29 Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS ++ +P T RA ++ +F+DLSG SL G + ++ D++TR+ FLKHKSDA A + + A + ++R+D GGE+ +F RK IK E TP + P+YNGV ERALGL++D +A L G S LWAEA+A++C+ N +++S SPY++W+G P
Sbjct: 556 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 752
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 122 bits (307), Expect = 6.340e-29 Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS ++ +P T RA ++ +F+DLSG SL G + ++ D++TR+ FLKHKSDA A + + A + ++R+D GGE+ +F RK IK E TP + P+YNGV ERALGL++D +A L G S LWAEA+A++C+ N +++S SPY++W+G P
Sbjct: 699 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 895
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.540e-28 Identity = 73/199 (36.68%), Postives = 107/199 (53.77%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS ++ +P T RA +R +F+DLSG SL G + ++ D +TR+ FLKHKSDA A + + A + ++R+D GGE+ +F RK IK E TP + P+YNGV ERALGL++D +A L G S WAEA+A+AC+ N +++S SPY++W+G P
Sbjct: 569 CLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP 765
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 120 bits (301), Expect = 3.200e-28 Identity = 69/184 (37.50%), Postives = 101/184 (54.89%), Query Frame = 1
Query: 40 VPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWHSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVALLRGVME-----GKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
V KST RA ++ +++DL G S+ GN + ++ D+F+R+ FLKHKSDA + DY +G+ ++ I RTDGGGE+ QF R+ GIK E TPP+ P+YNGV ERALGL+ D +A + LWAEA++ AC N + S + S Y++++ P
Sbjct: 9 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPP 191
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE) HSP 1 Score: 118 bits (295), Expect = 8.670e-28 Identity = 70/196 (35.71%), Postives = 102/196 (52.04%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEG-LKIGIIRTDGGGEWHSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVALLRGVME-----GKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 570
C+ CS S+ + V KST RA R +++DL S+ G+ + ++ D+F+R+ FLKHKSDA + DY ++ I RTDGGGE+ QF R+ GIK E TPP+ +YNGV ERALGL+ D +A + LWAEA++ AC N + S + S Y++++ P
Sbjct: 169 CLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDNSAYEMFHDSSP 364 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86374.16204.1 >prot_H-elongata_contig86374.16204.1 ID=prot_H-elongata_contig86374.16204.1|Name=mRNA_H-elongata_contig86374.16204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLback to top mRNA from alignment at H-elongata_contig86374:987..1556+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86374.16204.1 ID=mRNA_H-elongata_contig86374.16204.1|Name=mRNA_H-elongata_contig86374.16204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig86374:987..1556+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86374:987..1556+ >mRNA_H-elongata_contig86374.16204.1 ID=mRNA_H-elongata_contig86374.16204.1|Name=mRNA_H-elongata_contig86374.16204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig86374:987..1556+ (Himanthalia elongata Himel1 dioecious)back to top |