mRNA_H-elongata_contig86328.16201.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 268 bits (684), Expect = 6.050e-83 Identity = 130/256 (50.78%), Postives = 181/256 (70.70%), Query Frame = 1
Query: 10 MVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRIL-TEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
MV ALN +AK+P RR++++RM + AL+ M+ ++V++T+DGWTSR NESY+S TV Y+D EWK+ L C+K G+TTGEDLAA + MV+ H LTGRV+ T+CEPSM+K GR+L + +H+GC+ HR+E T+ VF+G + ++ LAR L+ RY KSSQ + RL +LCG + + PL V+QDVETRWWST ++V RL+YL + I+L ES+D + PLL DW VL ++EP+L PFM QK LE
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLE 255
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 254 bits (648), Expect = 8.820e-78 Identity = 128/259 (49.42%), Postives = 175/259 (67.57%), Query Frame = 1
Query: 1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRIL-TEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
F +V LN KA+ P RR +V +M EI L+ M+ +YV++T+DGWTSR+NESY+S TV Y+D W++ L +C+K GST GEDLA I +M++ HGLTGRV T+CEPSMVK GR+L H+GC+ HR+E T+ VF+G + ++A AR ++ RY +SSQ S RL G + + PL V+QDVETRWWS+ +++ERL+YL + I+L ES DNIAP+L DW VL ++EP+L PFM QK LE
Sbjct: 34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLE 291
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 249 bits (635), Expect = 1.810e-76 Identity = 120/258 (46.51%), Postives = 172/258 (66.67%), Query Frame = 1
Query: 1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
F +MV L S+A +PH+R + ++ + L +TG++V++TSDGWTS +N++Y+ FT Y+ + +V L C K G TTGEDL +++AM+ +GLT R V T+CEPSMVK GR+L E TH+GC CHR+E +T+ F GPGV K++ALAR ++TRY SSQASDRL+++ V + +V+QDVETRWWST++ + RL+ LRR I E +D+I PLL DW VL+++EP+ PF+ QK E
Sbjct: 7 FIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHRE 264
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 235 bits (599), Expect = 8.620e-68 Identity = 112/220 (50.91%), Postives = 152/220 (69.09%), Query Frame = 1
Query: 115 MTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
MTG++V++TSDGWT +N++Y+SFT Y+ + +V L C K T GEDL +++AM+ +GLTGR V T+CE SMVK GR+L E TH+GC CHR+E +T+ F GPGV K++ALAR ++TRYT SSQASDRL+++C V + V+QDVETRWWST+ + RL+ LRR I E +D+ PLL DW VL+++E +L PFM QK LE
Sbjct: 1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLE 220
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 196 bits (497), Expect = 5.690e-57 Identity = 95/206 (46.12%), Postives = 131/206 (63.59%), Query Frame = 1
Query: 157 SRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
S +N++Y++FT Y+ + +V L K G TTGEDL +++AM+ +GLTGR V T+CEP MVK GR+L E +H+GC CHR E +T+ F GPGV K++AL R ++TRYT SSQAS+RL+++C V + +V+QDVETRWWST +D+I PLL DW VL+++EP+L PFM QK LE
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLE 192
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 185 bits (470), Expect = 3.640e-50 Identity = 100/230 (43.48%), Postives = 148/230 (64.35%), Query Frame = 1
Query: 10 MVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILT-EKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGT-VGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPL 693
MV+A+ A++P ++D V M + + ++ G+ V +TSDGWTS AN++Y+S T + WK+VTL CSK EG+TTG+ LAA I+A V HGLTG+V T+CEPSMVK+GR+L + + T +GC +R+E +++VF+GP VKK + LAR L+TRY SSQA+DRL++ T +G+ RVIQDV T S+V +Y R L++++D++ L
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVTG-----SLVVPFIYDLRN-SLEDAIDDLVEL 224
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI) HSP 1 Score: 119 bits (298), Expect = 5.860e-27 Identity = 69/263 (26.24%), Postives = 136/263 (51.71%), Query Frame = 1
Query: 1 FRDMVYALNSKAKIPHRRDVVNRMHEILV--ALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESL-DNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLERD 780
FR+ + ALN ++P+R + + L L + ++TG+ +T+D WTS E+YI T ++DE +K+ +L+ CSK + S ED+A +++ + + G+ ++++ ++ +M K + L E + H GC H I + ++ + + ++ + +S A+++L T PL++IQ+V+TRW ST+ ++ER V L I+ ++ D P L +W +L+ + +L P+ + K + D
Sbjct: 138 FRNFISALNPSYELPNRHTISKTLLPALYEECLNDTKKKILTGKSFCITTDSWTSNNTENYIGVTAHFLDENFKLHSLLLECSKTDASHKAEDIAGTLKRITQYWGIDQKIILAVSDNASNMQKAIQQLLE---WKHFGCFAHTINLIVKDALKCKDIQAIVEKVKRIVEYFRRSCTATEKLSRYQATSRNTPLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGD 397
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: UPI0018979202 (E3 SUMO-protein ligase ZBED1-like n=5 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018979202) HSP 1 Score: 103 bits (258), Expect = 1.120e-21 Identity = 77/285 (27.02%), Postives = 132/285 (46.32%), Query Frame = 1
Query: 1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSA--PTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVY-------------LRRVIELQE-------SLDNIAPLLGPVDWAVLEMLE---PVLSPFMYIQKKLERD 780
F+D+++ L + KIP R+ + N L A S + + V++T+D WTS + ESY++ TV Y+ +WK+ V +GS TG+++ A ++ L + T+ +MV G E M H+ C H I T F V + + R + + +S +A++ LQE + +P ++IQDV TRW S+H ++ER LR+ E+ +++I L+ PV M E P LS + ++ KL+++
Sbjct: 139 FQDLIHTLEPRYKIPSRQHITNTCMPALYAQVKSQVEKELAHAERVAITTDAWTSCSTESYVTITVHYISPDWKLNVHVLQTRAFKGSHTGKNIGALLKQACVDWNLLDKDPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKVDTVARLLGRVRKAVAFFHRSVRAAEILQEKQKQLALPSHKLIQDVSTRWNSSHDMLERFFEQHPAISAALMSRDLRKGEEVNTLKDKDFCDIEDIVKLMAPVKLVTTSMSEDKRPTLSMILPVKAKLKKN 420
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: UPI00189AE5F0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189AE5F0) HSP 1 Score: 103 bits (258), Expect = 1.520e-21 Identity = 77/285 (27.02%), Postives = 132/285 (46.32%), Query Frame = 1
Query: 1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSA--PTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVY-------------LRRVIELQE-------SLDNIAPLLGPVDWAVLEMLE---PVLSPFMYIQKKLERD 780
F+D+++ L + KIP R+ + N L A S + + V++T+D WTS + ESY++ TV Y+ +WK+ V +GS TG+++ A ++ L + T+ +MV G E M H+ C H I T F V + + R + + +S +A++ LQE + +P ++IQDV TRW S+H ++ER LR+ E+ +++I L+ PV M E P LS + ++ KL+++
Sbjct: 139 FQDLIHTLEPRYKIPSRQHITNTCMPALYAQVKSQVEKELAHAERVAITTDAWTSCSTESYVTITVHYISPDWKLNVHVLQTRAFKGSHTGKNIGALLKQACVDWNLLDKDPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKVDTVARLLGRVRKAVAFFHRSVRAAEILQEKQKQLALPSHKLIQDVSTRWNSSHDMLERFFEQHPAISAALMSRDLRKGEEVNTLKDKDFCDIEDIVKLMAPVKLVTTSMSEDKRPTLSMILPVKAKLKKN 420
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: UPI000DC158A4 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC158A4) HSP 1 Score: 100 bits (250), Expect = 1.160e-20 Identity = 70/267 (26.22%), Postives = 130/267 (48.69%), Query Frame = 1
Query: 1 FRDMVYALNSKAKIPHRRDVVNRMHEILV-ALQGSAPTMMTGQY-VSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHG----PGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLR-RVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLERD 780
F++++ LN K+P R+ V N M +L +MT + V +T+DGWTS NES++ T ++DE + ++ C K + T ++LA ++ ++ + +V ++ P++V R F HV C H CV +V G +KK + + ++ + +SS A +L + +G+ PL++ QDV TRW STH + +R++ ++ V+ L L +W ++E +L F + K++ +
Sbjct: 18 FQNLLKMLNGGYKLPSRKTVSNSMIPLLYHQTHEKVQALMTNCFAVCLTTDGWTSIKNESFMGVTAHFIDENVSLQSVCLGCEKFDDRHTSQNLALFLKNTIQKWSIQNKVAAVVSDNAPNIVGAIRECN----FRHVSCFAH---CVNLVVQQGLKDINNIKKKV---KSIVEYFKRSSHAQSKLLAMQQQMGLSPLKLKQDVVTRWNSTHDMFKRIIEIKDAVVSTLAILQCDVEQLTVAEWQIVECSANILQIFAEVTKEISSE 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86328.16201.1 >prot_H-elongata_contig86328.16201.1 ID=prot_H-elongata_contig86328.16201.1|Name=mRNA_H-elongata_contig86328.16201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp MVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRback to top mRNA from alignment at H-elongata_contig86328:363..1142+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86328.16201.1 ID=mRNA_H-elongata_contig86328.16201.1|Name=mRNA_H-elongata_contig86328.16201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig86328:363..1142+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86328:363..1142+ >mRNA_H-elongata_contig86328.16201.1 ID=mRNA_H-elongata_contig86328.16201.1|Name=mRNA_H-elongata_contig86328.16201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig86328:363..1142+ (Himanthalia elongata Himel1 dioecious)back to top |