mRNA_H-elongata_contig86328.16201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86328.16201.1
Unique NamemRNA_H-elongata_contig86328.16201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 6.050e-83
Identity = 130/256 (50.78%), Postives = 181/256 (70.70%), Query Frame = 1
Query:   10 MVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRIL-TEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
            MV ALN +AK+P RR++++RM  +  AL+     M+  ++V++T+DGWTSR NESY+S TV Y+D EWK+  L   C+K  G+TTGEDLAA +  MV+ H LTGRV+   T+CEPSM+K GR+L  +    +H+GC+ HR+E  T+ VF+G  +  ++ LAR L+ RY KSSQ + RL +LCG + + PL V+QDVETRWWST ++V RL+YL + I+L ES+D + PLL   DW VL ++EP+L PFM  QK LE
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLE 255          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 8.820e-78
Identity = 128/259 (49.42%), Postives = 175/259 (67.57%), Query Frame = 1
Query:    1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRIL-TEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
            F  +V  LN KA+ P RR +V +M EI   L+     M+  +YV++T+DGWTSR+NESY+S TV Y+D  W++  L  +C+K  GST GEDLA  I +M++ HGLTGRV    T+CEPSMVK GR+L        H+GC+ HR+E  T+ VF+G  +  ++A AR ++ RY +SSQ S RL    G + + PL V+QDVETRWWS+ +++ERL+YL + I+L ES DNIAP+L   DW VL ++EP+L PFM  QK LE
Sbjct:   34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLE 291          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.810e-76
Identity = 120/258 (46.51%), Postives = 172/258 (66.67%), Query Frame = 1
Query:    1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
            F +MV  L S+A +PH+R  + ++  +   L       +TG++V++TSDGWTS +N++Y+ FT  Y+   + +V L   C K  G TTGEDL  +++AM+  +GLT R V   T+CEPSMVK GR+L E    TH+GC CHR+E +T+  F GPGV K++ALAR ++TRY  SSQASDRL+++   V +   +V+QDVETRWWST++ + RL+ LRR I   E +D+I PLL   DW VL+++EP+  PF+  QK  E
Sbjct:    7 FIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHRE 264          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 8.620e-68
Identity = 112/220 (50.91%), Postives = 152/220 (69.09%), Query Frame = 1
Query:  115 MTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
            MTG++V++TSDGWT  +N++Y+SFT  Y+   + +V L   C K    T GEDL  +++AM+  +GLTGR V   T+CE SMVK GR+L E    TH+GC CHR+E +T+  F GPGV K++ALAR ++TRYT SSQASDRL+++C  V +    V+QDVETRWWST+  + RL+ LRR I   E +D+  PLL   DW VL+++E +L PFM  QK LE
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLE 220          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 5.690e-57
Identity = 95/206 (46.12%), Postives = 131/206 (63.59%), Query Frame = 1
Query:  157 SRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLE 774
            S +N++Y++FT  Y+   + +V L     K  G TTGEDL  +++AM+  +GLTGR V   T+CEP MVK GR+L E    +H+GC CHR E +T+  F GPGV K++AL R ++TRYT SSQAS+RL+++C  V +   +V+QDVETRWWST                   +D+I PLL   DW VL+++EP+L PFM  QK LE
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLE 192          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 3.640e-50
Identity = 100/230 (43.48%), Postives = 148/230 (64.35%), Query Frame = 1
Query:   10 MVYALNSKAKIPHRRDVVNRMHEILVALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILT-EKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGT-VGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESLDNIAPL 693
            MV+A+   A++P ++D V  M  +   +      ++ G+ V +TSDGWTS AN++Y+S T   +   WK+VTL   CSK EG+TTG+ LAA I+A V  HGLTG+V    T+CEPSMVK+GR+L  +  + T +GC  +R+E  +++VF+GP VKK + LAR L+TRY  SSQA+DRL++   T +G+   RVIQDV T      S+V   +Y  R   L++++D++  L
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVTG-----SLVVPFIYDLRN-SLEDAIDDLVEL 224          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI)

HSP 1 Score: 119 bits (298), Expect = 5.860e-27
Identity = 69/263 (26.24%), Postives = 136/263 (51.71%), Query Frame = 1
Query:    1 FRDMVYALNSKAKIPHRRDVVNRMHEILV--ALQGSAPTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVIELQESL-DNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLERD 780
            FR+ + ALN   ++P+R  +   +   L    L  +   ++TG+   +T+D WTS   E+YI  T  ++DE +K+ +L+  CSK + S   ED+A +++ + +  G+  ++++  ++   +M K  + L E   + H GC  H I  +         ++  +   + ++  + +S  A+++L     T    PL++IQ+V+TRW ST+ ++ER V L   I+   ++ D   P L   +W +L+ +  +L P+  + K +  D
Sbjct:  138 FRNFISALNPSYELPNRHTISKTLLPALYEECLNDTKKKILTGKSFCITTDSWTSNNTENYIGVTAHFLDENFKLHSLLLECSKTDASHKAEDIAGTLKRITQYWGIDQKIILAVSDNASNMQKAIQQLLE---WKHFGCFAHTINLIVKDALKCKDIQAIVEKVKRIVEYFRRSCTATEKLSRYQATSRNTPLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGD 397          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: UPI0018979202 (E3 SUMO-protein ligase ZBED1-like n=5 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018979202)

HSP 1 Score: 103 bits (258), Expect = 1.120e-21
Identity = 77/285 (27.02%), Postives = 132/285 (46.32%), Query Frame = 1
Query:    1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSA--PTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVY-------------LRRVIELQE-------SLDNIAPLLGPVDWAVLEMLE---PVLSPFMYIQKKLERD 780
            F+D+++ L  + KIP R+ + N     L A   S     +   + V++T+D WTS + ESY++ TV Y+  +WK+   V      +GS TG+++ A ++       L  +     T+   +MV  G    E  M  H+ C  H I   T   F    V + +   R  +  + +S +A++ LQE    + +P  ++IQDV TRW S+H ++ER                LR+  E+          +++I  L+ PV      M E   P LS  + ++ KL+++
Sbjct:  139 FQDLIHTLEPRYKIPSRQHITNTCMPALYAQVKSQVEKELAHAERVAITTDAWTSCSTESYVTITVHYISPDWKLNVHVLQTRAFKGSHTGKNIGALLKQACVDWNLLDKDPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKVDTVARLLGRVRKAVAFFHRSVRAAEILQEKQKQLALPSHKLIQDVSTRWNSSHDMLERFFEQHPAISAALMSRDLRKGEEVNTLKDKDFCDIEDIVKLMAPVKLVTTSMSEDKRPTLSMILPVKAKLKKN 420          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: UPI00189AE5F0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189AE5F0)

HSP 1 Score: 103 bits (258), Expect = 1.520e-21
Identity = 77/285 (27.02%), Postives = 132/285 (46.32%), Query Frame = 1
Query:    1 FRDMVYALNSKAKIPHRRDVVNRMHEILVALQGSA--PTMMTGQYVSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVY-------------LRRVIELQE-------SLDNIAPLLGPVDWAVLEMLE---PVLSPFMYIQKKLERD 780
            F+D+++ L  + KIP R+ + N     L A   S     +   + V++T+D WTS + ESY++ TV Y+  +WK+   V      +GS TG+++ A ++       L  +     T+   +MV  G    E  M  H+ C  H I   T   F    V + +   R  +  + +S +A++ LQE    + +P  ++IQDV TRW S+H ++ER                LR+  E+          +++I  L+ PV      M E   P LS  + ++ KL+++
Sbjct:  139 FQDLIHTLEPRYKIPSRQHITNTCMPALYAQVKSQVEKELAHAERVAITTDAWTSCSTESYVTITVHYISPDWKLNVHVLQTRAFKGSHTGKNIGALLKQACVDWNLLDKDPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKVDTVARLLGRVRKAVAFFHRSVRAAEILQEKQKQLALPSHKLIQDVSTRWNSSHDMLERFFEQHPAISAALMSRDLRKGEEVNTLKDKDFCDIEDIVKLMAPVKLVTTSMSEDKRPTLSMILPVKAKLKKN 420          
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Match: UPI000DC158A4 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC158A4)

HSP 1 Score: 100 bits (250), Expect = 1.160e-20
Identity = 70/267 (26.22%), Postives = 130/267 (48.69%), Query Frame = 1
Query:    1 FRDMVYALNSKAKIPHRRDVVNRMHEILV-ALQGSAPTMMTGQY-VSMTSDGWTSRANESYISFTVVYVDEEWKMVTLVFSCSKKEGSTTGEDLAASIEAMVKTHGLTGRVVV*NTNCEPSMVKVGRILTEKRMFTHVGCTCHRIECVTALVFHG----PGVKKSIALARFLMTRYTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLR-RVIELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLERD 780
            F++++  LN   K+P R+ V N M  +L          +MT  + V +T+DGWTS  NES++  T  ++DE   + ++   C K +   T ++LA  ++  ++   +  +V    ++  P++V   R       F HV C  H   CV  +V  G      +KK +   + ++  + +SS A  +L  +   +G+ PL++ QDV TRW STH + +R++ ++  V+     L      L   +W ++E    +L  F  + K++  +
Sbjct:   18 FQNLLKMLNGGYKLPSRKTVSNSMIPLLYHQTHEKVQALMTNCFAVCLTTDGWTSIKNESFMGVTAHFIDENVSLQSVCLGCEKFDDRHTSQNLALFLKNTIQKWSIQNKVAAVVSDNAPNIVGAIRECN----FRHVSCFAH---CVNLVVQQGLKDINNIKKKV---KSIVEYFKRSSHAQSKLLAMQQQMGLSPLKLKQDVVTRWNSTHDMFKRIIEIKDAVVSTLAILQCDVEQLTVAEWQIVECSANILQIFAEVTKEISSE 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86328.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI6.050e-8350.78Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE8.820e-7849.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE1.810e-7646.51Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE8.620e-6850.91Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE5.690e-5746.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE3.640e-5043.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A224XKI7_9HEMI5.860e-2726.24Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylu... [more]
UPI00189792021.120e-2127.02E3 SUMO-protein ligase ZBED1-like n=5 Tax=Nematole... [more]
UPI00189AE5F01.520e-2127.02E3 SUMO-protein ligase ZBED1-like n=1 Tax=Nematole... [more]
UPI000DC158A41.160e-2026.22zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86328contigH-elongata_contig86328:363..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue5.1e-32
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size780
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.0825837-UTR-H-elongata_contig86328:362..7191622931265.0825837-UTR-H-elongata_contig86328:362..719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86328 363..719 +
1691679765.539474-UTR-H-elongata_contig86328:362..7191691679765.539474-UTR-H-elongata_contig86328:362..719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86328 363..719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.0968804-CDS-H-elongata_contig86328:719..11421622931265.0968804-CDS-H-elongata_contig86328:719..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86328 720..1142 +
1691679765.5516186-CDS-H-elongata_contig86328:719..11421691679765.5516186-CDS-H-elongata_contig86328:719..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86328 720..1142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86328.16201.1prot_H-elongata_contig86328.16201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86328 720..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86328.16201.1

>prot_H-elongata_contig86328.16201.1 ID=prot_H-elongata_contig86328.16201.1|Name=mRNA_H-elongata_contig86328.16201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MVKVGRILTEKRMFTHVGCTCHRIECVTALVFHGPGVKKSIALARFLMTR
YTKSSQASDRLQELCGTVGIPPLRVIQDVETRWWSTHSIVERLVYLRRVI
ELQESLDNIAPLLGPVDWAVLEMLEPVLSPFMYIQKKLERD
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mRNA from alignment at H-elongata_contig86328:363..1142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86328.16201.1 ID=mRNA_H-elongata_contig86328.16201.1|Name=mRNA_H-elongata_contig86328.16201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig86328:363..1142+ (Himanthalia elongata Himel1 dioecious)
TTTCGAGACATGGTGTATGCGCTTAATAGCAAGGCGAAAATACCGCATCG ACGTGACGTAGTCAACCGGATGCATGAGATTCTGGTGGCACTGCAAGGGA GCGCCCCTACCATGATGACGGGCCAGTACGTTTCCATGACCTCGGACGGA TGGACGTCACGCGCCAACGAGTCCTACATTTCCTTCACCGTCGTCTACGT CGATGAAGAATGGAAGATGGTGACTCTGGTGTTCAGCTGCTCGAAGAAGG AAGGTTCGACGACGGGGGAAGACCTAGCTGCGTCCATCGAGGCCATGGTC AAGACCCACGGCCTTACGGGGCGCGTGGTCGTTTGAAACACGAACTGCGA GCCGTCGATGGTGAAGGTGGGTCGCATTCTCACCGAAAAGCGCATGTTCA CCCACGTTGGGTGCACCTGCCACCGCATCGAGTGCGTCACTGCGCTGGTC TTTCACGGGCCCGGCGTGAAGAAGTCTATAGCTCTAGCTCGTTTCCTGAT GACTCGCTATACAAAATCTTCACAGGCTTCAGACCGACTTCAGGAGTTGT GCGGTACAGTTGGCATCCCTCCTTTGAGGGTAATTCAGGACGTGGAGACA CGGTGGTGGTCGACGCACTCGATAGTTGAGCGCCTGGTGTACCTTCGGCG TGTTATTGAGCTGCAAGAGTCCCTGGACAATATCGCCCCCCTGCTAGGGC CGGTGGACTGGGCCGTCTTGGAAATGCTCGAGCCTGTGCTATCTCCGTTC ATGTATATCCAGAAGAAGCTCGAACGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig86328:363..1142+

>mRNA_H-elongata_contig86328.16201.1 ID=mRNA_H-elongata_contig86328.16201.1|Name=mRNA_H-elongata_contig86328.16201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig86328:363..1142+ (Himanthalia elongata Himel1 dioecious)
ATGGTGAAGGTGGGTCGCATTCTCACCGAAAAGCGCATGTTCACCCACGT
TGGGTGCACCTGCCACCGCATCGAGTGCGTCACTGCGCTGGTCTTTCACG
GGCCCGGCGTGAAGAAGTCTATAGCTCTAGCTCGTTTCCTGATGACTCGC
TATACAAAATCTTCACAGGCTTCAGACCGACTTCAGGAGTTGTGCGGTAC
AGTTGGCATCCCTCCTTTGAGGGTAATTCAGGACGTGGAGACACGGTGGT
GGTCGACGCACTCGATAGTTGAGCGCCTGGTGTACCTTCGGCGTGTTATT
GAGCTGCAAGAGTCCCTGGACAATATCGCCCCCCTGCTAGGGCCGGTGGA
CTGGGCCGTCTTGGAAATGCTCGAGCCTGTGCTATCTCCGTTCATGTATA
TCCAGAAGAAGCTCGAACGTGACATGGTGAAGGTGGGTCGCATTCTCACC
GAAAAGCGCATGTTCACCCACGTTGGGTGCACCTGCCACCGCATCGAGTG
CGTCACTGCGCTGGTCTTTCACGGGCCCGGCGTGAAGAAGTCTATAGCTC
TAGCTCGTTTCCTGATGACTCGCTATACAAAATCTTCACAGGCTTCAGAC
CGACTTCAGGAGTTGTGCGGTACAGTTGGCATCCCTCCTTTGAGGGTAAT
TCAGGACGTGGAGACACGGTGGTGGTCGACGCACTCGATAGTTGAGCGCC
TGGTGTACCTTCGGCGTGTTATTGAGCTGCAAGAGTCCCTGGACAATATC
GCCCCCCTGCTAGGGCCGGTGGACTGGGCCGTCTTGGAAATGCTCGAGCC
TGTGCTATCTCCGTTCATGTATATCCAGAAGAAGCTCGAACGTGAC
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