mRNA_H-elongata_contig86237.16199.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86237.16199.1
Unique NamemRNA_H-elongata_contig86237.16199.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86237.16199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86237contigH-elongata_contig86237:1606..1889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size275
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.966729-CDS-H-elongata_contig86237:1605..17201622931264.966729-CDS-H-elongata_contig86237:1605..1720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86237 1606..1720 -
1691679765.4729567-CDS-H-elongata_contig86237:1605..17201691679765.4729567-CDS-H-elongata_contig86237:1605..1720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86237 1606..1720 -
1622931264.9798648-CDS-H-elongata_contig86237:1731..18891622931264.9798648-CDS-H-elongata_contig86237:1731..1889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86237 1732..1889 -
1691679765.484023-CDS-H-elongata_contig86237:1731..18891691679765.484023-CDS-H-elongata_contig86237:1731..1889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86237 1732..1889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86237.16199.1prot_H-elongata_contig86237.16199.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86237 1606..1889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86237.16199.1

>prot_H-elongata_contig86237.16199.1 ID=prot_H-elongata_contig86237.16199.1|Name=mRNA_H-elongata_contig86237.16199.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
GFSSLVGRSSSLLPLLSRRVLPPQSPSPPPSTLRGWWPVHPHPQFLPPSL
SRHSSIVVTATASARVPACPIVASTDRAAATGAIGSSPSV*
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mRNA from alignment at H-elongata_contig86237:1606..1889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86237.16199.1 ID=mRNA_H-elongata_contig86237.16199.1|Name=mRNA_H-elongata_contig86237.16199.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=284bp|location=Sequence derived from alignment at H-elongata_contig86237:1606..1889- (Himanthalia elongata Himel1 dioecious)
GGATTCTCGTCGCTTGTGGGACGATCATCATCGCTGCTGCCGTTACTGTC
ACGGCGGGTACTTCCGCCTCAATCCCCCTCACCCCCTCCCTCAACGCTAA
GGGGTTGGTGGCCGGTGCATCCCCACCCTCAATTCCTGCCACCTTCGTTG
TCACGACAGCGGCGGCCAGCTCCAGCATCGTGGTCACTGCAACCGCGTCC
GCGCGAGTCCCCGCATGCCCCATCGTCGCTTCCACTGATCGTGCGGCAGC
TACCGGTGCGATCGGTTCCTCCCCTTCAGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig86237:1606..1889-

>mRNA_H-elongata_contig86237.16199.1 ID=mRNA_H-elongata_contig86237.16199.1|Name=mRNA_H-elongata_contig86237.16199.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig86237:1606..1889- (Himanthalia elongata Himel1 dioecious)
GGATTCTCGTCGCTTGTGGGACGATCATCATCGCTGCTGCCGTTACTGTC
ACGGCGGGTACTTCCGCCTCAATCCCCCTCACCCCCTCCCTCAACGCTAA
GGGGTTGGTGGCCGGTGCATCCCCACCCTCAATTCCTGCCACCTTCGTTG
TCACGACAGGATTCTCGTCGCTTGTGGGACGATCATCATCGCTGCTGCCG
TTACTGTCACGGCGGGTACTTCCGCCTCAATCCCCCTCACCCCCTCCCTC
AACGCTAAGGGGTTGGTGGCCGGTGCATCCCCACCCTCAATTCCTGCCAC
CTTCGTTGTCACGACACTCCAGCATCGTGGTCACTGCAACCGCGTCCGCG
CGAGTCCCCGCATGCCCCATCGTCGCTTCCACTGATCGTGCGGCAGCTAC
CGGTGCGATCGGTTCCTCCCCTTCAGTCTGACTCCAGCATCGTGGTCACT
GCAACCGCGTCCGCGCGAGTCCCCGCATGCCCCATCGTCGCTTCCACTGA
TCGTGCGGCAGCTACCGGTGCGATCGGTTCCTCCCCTTCAGTCTGA
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