mRNA_H-elongata_contig86216.16197.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86216.16197.1
Unique NamemRNA_H-elongata_contig86216.16197.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86216.16197.1 vs. uniprot
Match: A0A6H5KX95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX95_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.780e-6
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   19 RNRLTLGQKREILQLLDQK-VSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKV 228
            R RLTLGQK EIL LLDQK +SR EI   + C   TV     +R  L+  AAS++    SK R+   FP+V
Sbjct:  138 RARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPEV 208
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BLAST of mRNA_H-elongata_contig86216.16197.1 vs. uniprot
Match: D7FS63_ECTSI (TGc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS63_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 8.810e-6
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   19 RNRLTLGQKREILQLLDQK-VSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPK 225
            R RLTLGQK EIL LLDQK +SR EI   + C   TV     +R  L+  AAS++    SK R+   FP+
Sbjct:  138 RARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPE 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86216.16197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX95_9PHAE1.780e-647.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS63_ECTSI8.810e-647.14TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86216contigH-elongata_contig86216:2387..2617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.8089943-CDS-H-elongata_contig86216:2386..26171622931264.8089943-CDS-H-elongata_contig86216:2386..2617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86216 2387..2617 -
1691679765.387043-CDS-H-elongata_contig86216:2386..26171691679765.387043-CDS-H-elongata_contig86216:2386..2617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86216 2387..2617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86216.16197.1prot_H-elongata_contig86216.16197.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86216 2387..2617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86216.16197.1

>prot_H-elongata_contig86216.16197.1 ID=prot_H-elongata_contig86216.16197.1|Name=mRNA_H-elongata_contig86216.16197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
KRKGEKRNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRA
TLQENAASTSWSETSKSRKGGDFPKV*
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mRNA from alignment at H-elongata_contig86216:2387..2617-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86216.16197.1 ID=mRNA_H-elongata_contig86216.16197.1|Name=mRNA_H-elongata_contig86216.16197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig86216:2387..2617- (Himanthalia elongata Himel1 dioecious)
AAACGAAAAGGAGAGAAACGCAACCGCCTGACACTGGGGCAAAAGCGAGA
GATTCTTCAGCTTCTGGATCAAAAGGTGTCGCGGACAGAAATAATGCGTA
GATTCAACTGCGGGCGCTCGACTGTAGGAGACATCAGGAAGGACAGGGCG
ACCCTGCAGGAGAATGCCGCAAGCACTTCGTGGAGTGAAACATCCAAGAG
CAGGAAAGGAGGAGATTTTCCTAAGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig86216:2387..2617-

>mRNA_H-elongata_contig86216.16197.1 ID=mRNA_H-elongata_contig86216.16197.1|Name=mRNA_H-elongata_contig86216.16197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig86216:2387..2617- (Himanthalia elongata Himel1 dioecious)
AAACGAAAAGGAGAGAAACGCAACCGCCTGACACTGGGGCAAAAGCGAGA
GATTCTTCAGCTTCTGGATCAAAAGGTGTCGCGGACAGAAATAATGCGTA
GATTCAACTGCGGGCGCTCGACTGTAGGAGACATCAGGAAGGACAGGGCG
ACCCTGCAGGAGAATGCCGCAAGCACTTCGTGGAGTGAAACATCCAAGAG
CAGGAAAGGAGGAGATTTTCCTAAGGTGTGAAAACGAAAAGGAGAGAAAC
GCAACCGCCTGACACTGGGGCAAAAGCGAGAGATTCTTCAGCTTCTGGAT
CAAAAGGTGTCGCGGACAGAAATAATGCGTAGATTCAACTGCGGGCGCTC
GACTGTAGGAGACATCAGGAAGGACAGGGCGACCCTGCAGGAGAATGCCG
CAAGCACTTCGTGGAGTGAAACATCCAAGAGCAGGAAAGGAGGAGATTTT
CCTAAGGTGTGA
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