mRNA_H-elongata_contig8617.16192.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8617.16192.1
Unique NamemRNA_H-elongata_contig8617.16192.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8617.16192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8617contigH-elongata_contig8617:38..881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size758
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8617.16192.1prot_H-elongata_contig8617.16192.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8617 238..761 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.400636-UTR-H-elongata_contig8617:37..2371622931264.400636-UTR-H-elongata_contig8617:37..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8617 38..237 -
1691679765.198266-UTR-H-elongata_contig8617:37..2371691679765.198266-UTR-H-elongata_contig8617:37..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8617 38..237 -
1622931264.4589086-UTR-H-elongata_contig8617:761..8811622931264.4589086-UTR-H-elongata_contig8617:761..881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8617 762..881 -
1691679765.2297165-UTR-H-elongata_contig8617:761..8811691679765.2297165-UTR-H-elongata_contig8617:761..881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8617 762..881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.4186666-CDS-H-elongata_contig8617:237..5131622931264.4186666-CDS-H-elongata_contig8617:237..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8617 238..513 -
1691679765.211506-CDS-H-elongata_contig8617:237..5131691679765.211506-CDS-H-elongata_contig8617:237..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8617 238..513 -
1622931264.4349325-CDS-H-elongata_contig8617:599..7611622931264.4349325-CDS-H-elongata_contig8617:599..761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8617 600..761 -
1691679765.2207654-CDS-H-elongata_contig8617:599..7611691679765.2207654-CDS-H-elongata_contig8617:599..761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8617 600..761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8617.16192.1

>prot_H-elongata_contig8617.16192.1 ID=prot_H-elongata_contig8617.16192.1|Name=mRNA_H-elongata_contig8617.16192.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MRTYSKGGMTRQWSKGYARRNSIFPCPRSGLSPISGHTFVPSQKRVTRPR
WSNRRGPFPSLRQSNLKINVAPSSNVVNPQVKQMRVTFIYQPHIVARASQ
TFWVHFPSTSPSDYGTTKEINSYTILTRRKNPILSYGREDNSIIY*
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mRNA from alignment at H-elongata_contig8617:38..881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8617.16192.1 ID=mRNA_H-elongata_contig8617.16192.1|Name=mRNA_H-elongata_contig8617.16192.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=844bp|location=Sequence derived from alignment at H-elongata_contig8617:38..881- (Himanthalia elongata Himel1 dioecious)
TTCGAAGAGTTTTGCACGGAAAAACGCCATGGACCCCGGCCCGCACAAGT
TCCGCGTCCTTCGACCACGAAGAGAGTCACCCGGCCCCGGTGTGGTTCGT
TTCCCAAAAGACGAAGCCACATGAGGACTTACTCAAAGGGGGGAATGACA
CGCCAGTGGTCGAAGGGCTACGCACGGAGGAACTCTATATTTCCTTGCCC
ACGCTCCGGTCTGTCGCCCATATCAGGTCACACGTTTGTACCCAGCCAAA
AAAGGGTCACCCGGCCCCGCTGGTCGAATCGAGCGATGAAGGATTCGAAT
CAGACATCATAGAATATGTTCGATATATCGTTTTATTTTTTATGCATCCC
AACCTTGGGGGCTAATAGAGAGGGCCGTTTCCTTCGCTTAGGCAGTCAAA
CTTAAAGATAAATGTTGCTCCTTCATCCAATGTGGTCAACCCGCAAGTCA
AACAAATGAGAGTCACTTTTATATACCAGCCACATATCGTAGCACGAGCA
AGTCAAACCTTTTGGGTGCATTTTCCCTCGACATCTCCAAGCGATTATGG
TACGACTAAGGAAATAAATTCTTATACCATCTTGACCAGGAGAAAGAACC
CTATTCTAAGTTACGGACGCGAAGATAATTCGATCATATATTAAGGACAG
GGAACCGAAGCATAGCTTGGCAGGGCGTACAGTAATAGCTCTAAAGTTTG
AAAAGCAGAACGGCGAGAGGGTTACTCGTCCTCAATATGAAAGCTTTCGA
TTTTAGATTCTATATTTGACACTTGCGGACAAGAAATCGGATCTCTCGTG
GACGAATGGATTTCACAAATCCATTCCTACCCCACCGAACAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig8617:38..881-

>mRNA_H-elongata_contig8617.16192.1 ID=mRNA_H-elongata_contig8617.16192.1|Name=mRNA_H-elongata_contig8617.16192.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig8617:38..881- (Himanthalia elongata Himel1 dioecious)
ATGAGGACTTACTCAAAGGGGGGAATGACACGCCAGTGGTCGAAGGGCTA
CGCACGGAGGAACTCTATATTTCCTTGCCCACGCTCCGGTCTGTCGCCCA
TATCAGGTCACACGTTTGTACCCAGCCAAAAAAGGGTCACCCGGCCCCGC
TGGTCGAATCGAATGAGGACTTACTCAAAGGGGGGAATGACACGCCAGTG
GTCGAAGGGCTACGCACGGAGGAACTCTATATTTCCTTGCCCACGCTCCG
GTCTGTCGCCCATATCAGGTCACACGTTTGTACCCAGCCAAAAAAGGGTC
ACCCGGCCCCGCTGGTCGAATCGAAGAGGGCCGTTTCCTTCGCTTAGGCA
GTCAAACTTAAAGATAAATGTTGCTCCTTCATCCAATGTGGTCAACCCGC
AAGTCAAACAAATGAGAGTCACTTTTATATACCAGCCACATATCGTAGCA
CGAGCAAGTCAAACCTTTTGGGTGCATTTTCCCTCGACATCTCCAAGCGA
TTATGGTACGACTAAGGAAATAAATTCTTATACCATCTTGACCAGGAGAA
AGAACCCTATTCTAAGTTACGGACGCGAAGATAATTCGATCATATATTAA
AGAGGGCCGTTTCCTTCGCTTAGGCAGTCAAACTTAAAGATAAATGTTGC
TCCTTCATCCAATGTGGTCAACCCGCAAGTCAAACAAATGAGAGTCACTT
TTATATACCAGCCACATATCGTAGCACGAGCAAGTCAAACCTTTTGGGTG
CATTTTCCCTCGACATCTCCAAGCGATTATGGTACGACTAAGGAAATAAA
TTCTTATACCATCTTGACCAGGAGAAAGAACCCTATTCTAAGTTACGGAC
GCGAAGATAATTCGATCATATATTAA
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