mRNA_H-elongata_contig86125.16188.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86125.16188.1
Unique NamemRNA_H-elongata_contig86125.16188.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86125.16188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86125contigH-elongata_contig86125:2068..2730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.0568163-UTR-H-elongata_contig86125:2067..23941622931264.0568163-UTR-H-elongata_contig86125:2067..2394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86125 2068..2394 +
1691679765.0974138-UTR-H-elongata_contig86125:2067..23941691679765.0974138-UTR-H-elongata_contig86125:2067..2394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86125 2068..2394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.0789852-CDS-H-elongata_contig86125:2394..27301622931264.0789852-CDS-H-elongata_contig86125:2394..2730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86125 2395..2730 +
1691679765.1102126-CDS-H-elongata_contig86125:2394..27301691679765.1102126-CDS-H-elongata_contig86125:2394..2730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86125 2395..2730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86125.16188.1prot_H-elongata_contig86125.16188.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86125 2395..2730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86125.16188.1

>prot_H-elongata_contig86125.16188.1 ID=prot_H-elongata_contig86125.16188.1|Name=mRNA_H-elongata_contig86125.16188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MVWTGTEHSRSSSHEFYVSQHTIFACDGVDQSEDSSMSLSCCCREIVSSE
KSRQGHPNDDEIFGILSHLFGIPSSTRINSLLISMTCTGRPGGVRVKPSS
LIPGSSEFESWR
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mRNA from alignment at H-elongata_contig86125:2068..2730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86125.16188.1 ID=mRNA_H-elongata_contig86125.16188.1|Name=mRNA_H-elongata_contig86125.16188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=663bp|location=Sequence derived from alignment at H-elongata_contig86125:2068..2730+ (Himanthalia elongata Himel1 dioecious)
GGTCCAAAAAGTGGTACGAAGACGTCGGGGGGGAAGACCTACACCAGGAA
CCCGTGACTGATGCACAAAAAAATGATAATTATTTTGACATCTGATACAA
AACGCAAGAAAATATGGAGAAGGGTGCTTGCTGATGAGGAGTGGCATCGA
ACGGGTACTCGACGATTCCTGCGATGAGGAGCGGCTTTCTTGCGCTGGTA
AGCCGTCTAGAGGAACCAACGCTCAGGATACGGTCGAAGGCGAGCGCGCG
CGGTGCGGGGGGGCTGCTGCATTCTTCGTAGAATCTTCCTCGCACCTTCA
TGATAATAATAATAATAATAATGTGTAATGGTTTGGACTGGAACGGAGCA
TAGCCGGAGCAGCAGCCATGAATTCTACGTCAGTCAGCATACAATATTTG
CATGCGATGGTGTGGACCAGTCGGAGGATAGCAGCATGTCGCTCTCTTGT
TGTTGTAGGGAAATCGTGTCAAGTGAAAAATCTCGTCAGGGACATCCAAA
TGATGACGAGATTTTTGGCATATTATCACATTTGTTTGGTATACCGAGTA
GTACTCGTATCAACTCTCTCTTAATATCAATGACTTGTACCGGTCGCCCC
GGTGGTGTGAGGGTCAAGCCGTCTTCCTTGATCCCCGGAAGTAGTGAGTT
CGAATCCTGGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig86125:2068..2730+

>mRNA_H-elongata_contig86125.16188.1 ID=mRNA_H-elongata_contig86125.16188.1|Name=mRNA_H-elongata_contig86125.16188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig86125:2068..2730+ (Himanthalia elongata Himel1 dioecious)
ATGGTTTGGACTGGAACGGAGCATAGCCGGAGCAGCAGCCATGAATTCTA
CGTCAGTCAGCATACAATATTTGCATGCGATGGTGTGGACCAGTCGGAGG
ATAGCAGCATGTCGCTCTCTTGTTGTTGTAGGGAAATCGTGTCAAGTGAA
AAATCTCGTCAGGGACATCCAAATGATGACGAGATTTTTGGCATATTATC
ACATTTGTTTGGTATACCGAGTAGTACTCGTATCAACTCTCTCTTAATAT
CAATGACTTGTACCGGTCGCCCCGGTGGTGTGAGGGTCAAGCCGTCTTCC
TTGATCCCCGGAAGTAGTGAGTTCGAATCCTGGCGGATGGTTTGGACTGG
AACGGAGCATAGCCGGAGCAGCAGCCATGAATTCTACGTCAGTCAGCATA
CAATATTTGCATGCGATGGTGTGGACCAGTCGGAGGATAGCAGCATGTCG
CTCTCTTGTTGTTGTAGGGAAATCGTGTCAAGTGAAAAATCTCGTCAGGG
ACATCCAAATGATGACGAGATTTTTGGCATATTATCACATTTGTTTGGTA
TACCGAGTAGTACTCGTATCAACTCTCTCTTAATATCAATGACTTGTACC
GGTCGCCCCGGTGGTGTGAGGGTCAAGCCGTCTTCCTTGATCCCCGGAAG
TAGTGAGTTCGAATCCTGGCGG
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