mRNA_H-elongata_contig86109.16187.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 352 bits (902), Expect = 6.350e-113 Identity = 179/260 (68.85%), Postives = 201/260 (77.31%), Query Frame = 1
Query: 4 LDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
+DIWTDKGS RKFL HV+YV ANFELKD LLSIKRY+PDQG+LG +AS+VL +I KS+L EFGL PS+LASGTTDSGSDVKAVS N LW + SKNP ARD+LK V+KVVE LNKS N +AKFEDLQVD+LGE+FK+VKHAPQRWLSLTRT+ER IRLWHVLR+LYSDEG+NFPLEEGD KD ILQLYSLLQPLSSITRDGQYG APM A+IFMKF L T VLD S+ L+
Sbjct: 261 IDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEEFGLKPSHLASGTTDSGSDVKAVSTNCLWPMYAVLWCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLK 520
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 317 bits (811), Expect = 6.930e-102 Identity = 166/261 (63.60%), Postives = 193/261 (73.95%), Query Frame = 1
Query: 1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
M+DIW DK S RKFL HV+YVTANFELK LLSIKRY P Q ALG+AKA+EVLLEI ++ILHEFG PS+LASGTTDSGSDVK+VS+NGL ++G SKNP A ++LK +I +V TL+KS NL AKFEDLQVDLLGEV K+ APQRWL+L RT+ER+IRLWHVLR+LYSD GKNF LEEGDNKD I QLYSLLQ LSS+TRDGQYGG PM A+I++KF LK VL+ S L+
Sbjct: 16 MIDIWADKPSGRKFLGVHVFYVTANFELKQTLLSIKRYRPSQDALGEAKAAEVLLEILEAILHEFGRRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGLPMLADIYIKFGMLKMGVLNSSADLK 276
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE) HSP 1 Score: 295 bits (756), Expect = 2.620e-95 Identity = 159/261 (60.92%), Postives = 188/261 (72.03%), Query Frame = 1
Query: 1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
M+DIW DK S RKFL HV+YVTANFELK LLS ALG+ KA+EVLLEI ++IL+EFGL PS+LASGTTDSGSDVK+VS+NGL ++G SKNP AR++LK +I ++ TL+KS NL AKFEDLQVDLLGEV + APQRWL+L RT+ER+IRLW V+R+LYSD GKNFPLEEGDNKD I QLYSLLQPLSS+TRDGQYGG PM A+I+MKF LK VL+ S L+
Sbjct: 16 MIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEVKAAEVLLEILEAILNEFGLRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 267
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE) HSP 1 Score: 290 bits (741), Expect = 1.240e-93 Identity = 153/250 (61.20%), Postives = 179/250 (71.60%), Query Frame = 1
Query: 1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLK 669
M+DIWTDK S RKFL H++YVTANFELK L+S AKA+EVLL+I +S+LHEFGL S+LASGTTDSGSDVK+VS+NGL ++G SKNP R +LK VI +V TL+KS NL AKFED+QVDLLGE+ K+ APQRWL+L RTLER+IRLWHVLR+L+SD GK FPLEEGDNKD ILQLYSLLQPLSS+TRDGQYGG PM A+I+MKF LK
Sbjct: 186 MIDIWTDKPSGRKFLGVHLFYVTANFELKQALIS-------------AKAAEVLLKILESVLHEFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGVPMMADIYMKFGMLK 422
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE) HSP 1 Score: 291 bits (745), Expect = 1.680e-93 Identity = 150/227 (66.08%), Postives = 173/227 (76.21%), Query Frame = 1
Query: 103 IKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
IKRYSP Q ALG+A ASEVLLEIFKSIL EFGL PS+LASGTTDSGSDVK+ S+NGL+ Q+G SKNP ARD+LK VI +V TLN+SSN +AKFEDLQVDLLG+V K+ APQRWL+ RTLER+IRLWHVLR+LYSD GKNFPLEEGDNK+ ILQL+SLLQ LSS+TRDGQYG APM A++FMKF LK +VLD S+PL+
Sbjct: 10 IKRYSPSQDALGEAAASEVLLEIFKSILREFGLRPSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLK 236
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE) HSP 1 Score: 280 bits (716), Expect = 8.120e-89 Identity = 160/230 (69.57%), Postives = 161/230 (70.00%), Query Frame = 1
Query: 91 VLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG--------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
+L KRYSPDQGALGQAKASEVLL IFKSILHEFGLNPS LASGTTDSGSDVKAVSINGLWK FG SKNPAARDLLKTVIKVVETLNKSSNL AKFEDLQVDLLGEVFKVVKHAPQRWL LTRTLERIIRLWH PLSSITRD QYGGAPMTAEIFMKFA LKT VLDMSEPLR
Sbjct: 1 MLFKSKRYSPDQGALGQAKASEVLLVIFKSILHEFGLNPSYLASGTTDSGSDVKAVSINGLWKHFGVLWNWCFCHLMKAAEQPFCTSLDTVKSKNPAARDLLKTVIKVVETLNKSSNLGAKFEDLQVDLLGEVFKVVKHAPQRWLGLTRTLERIIRLWH--------------------------------PLSSITRDVQYGGAPMTAEIFMKFATLKTNVLDMSEPLR 198
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE) HSP 1 Score: 260 bits (664), Expect = 3.470e-83 Identity = 147/261 (56.32%), Postives = 169/261 (64.75%), Query Frame = 1
Query: 1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
M+DIWTDKGS RK L P G VLLEI K+ILHEFGL S+LASGT DSGSDVK+VS NGL QFG SKNP ARD+LK +I +V TL++SSN +AKF+DLQVD+LGEV K+ AP+RWL+L RTLER+IRLWHVLR+LYSD GK FPLEEGDNKD ILQLYSLLQP SS+TRDGQYGGAPM A+I+MK LK +VLD SE L+
Sbjct: 57 MIDIWTDKGSGRKTLWER---------------------PRPG---------VLLEIVKAILHEFGLRTSDLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELK 287
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE) HSP 1 Score: 248 bits (633), Expect = 3.800e-78 Identity = 139/227 (61.23%), Postives = 158/227 (69.60%), Query Frame = 1
Query: 103 IKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
IKRY P Q A+G+AKASEVLLEI +ILHEFGL PS+LASGTTDSG DVK+VS+NGL QFG SKNP ARD+LK +I +V TL++SSN +AKF DLQVD+ GEVF APQRWL+L TLER+IRLWHVLR+LYSD GK FPLEEGD D ILQL SLLQPLSS+TRDGQYGGAPM LK +VLD SE L+
Sbjct: 18 IKRYQPSQDAVGEAKASEVLLEIVNAILHEFGLRPSDLASGTTDSGLDVKSVSVNGLHPQFGVLWNCCFYHLMVKAAEDGFGTHVDPQKSKNPKARDMLKKLINLVGTLHRSSNFKAKFGDLQVDVWGEVFP--NQAPQRWLTLVPTLERVIRLWHVLRKLYSDTGKTFPLEEGDITDCILQLNSLLQPLSSVTRDGQYGGAPM----------LKMRVLDPSEELK 232
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 250 bits (638), Expect = 1.590e-77 Identity = 129/249 (51.81%), Postives = 172/249 (69.08%), Query Frame = 1
Query: 4 LDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSIN---GLWK-----------------QFG-------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLK 669
LD+WT K S RK+L HV+YV +NF L+ L+S+K Y+P G KASE+L IF++ L E+G+ S+LA GTTDSGSDVKA+ +N GL K FG SKN ARD++K VIK +N+S+ ++ KFE + +++L E+ K+ KHAPQRWLSL +ERIIRLWHVLR++Y+++G+ FPL++G+N+D ILQLYSLLQPLS+ITRDGQYG APMTAE+ + FA LK
Sbjct: 225 LDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQYGNAPMTAEMHLAFAQLK 473
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE) HSP 1 Score: 244 bits (624), Expect = 1.210e-73 Identity = 160/390 (41.03%), Postives = 189/390 (48.46%), Query Frame = 1
Query: 1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTD---------------------------------------------------------------------------------------------------------------------------------SGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
M+DIW DK S RKFL HV+YVTANFELK LLS ALG+AKA+EVL+EI ++ILHEFGL PS+LASGTTD SGSDVK+VS+NGL ++G SKNP AR++LK +I ++ TL+KS NL AKFEDLQVDLLGEV + APQRWL+L RT+ER+IRLW V+R+LYSD GKNFPLEEGDNKD I QLYSLLQPLSS+TRDGQYGG PM A+I+MKF LK VL+ S L+
Sbjct: 16 MIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEAKAAEVLVEILEAILHEFGLRPSDLASGTTDKRYRPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86109.16187.1 >prot_H-elongata_contig86109.16187.1 ID=prot_H-elongata_contig86109.16187.1|Name=mRNA_H-elongata_contig86109.16187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKAback to top mRNA from alignment at H-elongata_contig86109:579..1712- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86109.16187.1 ID=mRNA_H-elongata_contig86109.16187.1|Name=mRNA_H-elongata_contig86109.16187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1134bp|location=Sequence derived from alignment at H-elongata_contig86109:579..1712- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86109:579..1712- >mRNA_H-elongata_contig86109.16187.1 ID=mRNA_H-elongata_contig86109.16187.1|Name=mRNA_H-elongata_contig86109.16187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig86109:579..1712- (Himanthalia elongata Himel1 dioecious)back to top |