mRNA_H-elongata_contig86002.16181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86002.16181.1
Unique NamemRNA_H-elongata_contig86002.16181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86002.16181.1 vs. uniprot
Match: A0A7D9IJR2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IJR2_PARCT)

HSP 1 Score: 52.8 bits (125), Expect = 8.140e-6
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   31 SQNSRNDYWIGDSGASCHMTNDASKIYNVRIPSFDKREVIT-SDGTRLRVKCIGNIDVVF---HGRSDEPITLCDVSYVPDLNFKLFSFHKALKT 303
            S N R + WI DSGA+CHM NDAS+   V++ + +K E +T +DG  ++    G +       +G+  +   L DV YVP L+  L S  KA K+
Sbjct:   47 SVNGRTNTWIIDSGATCHMCNDASQF--VKLHNLEKPEDVTLADGHVVKATGRGVVKTKIESPNGQKGKSCVLQDVLYVPSLSNNLVSVSKATKS 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86002.16181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7D9IJR2_PARCT8.140e-637.89Retrovirus-related Pol poly from transposon TNT 1-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86002contigH-elongata_contig86002:18..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.5037355-CDS-H-elongata_contig86002:17..3231622931263.5037355-CDS-H-elongata_contig86002:17..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86002 18..323 -
1691679764.8849041-CDS-H-elongata_contig86002:17..3231691679764.8849041-CDS-H-elongata_contig86002:17..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86002 18..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86002.16181.1prot_H-elongata_contig86002.16181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86002 18..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86002.16181.1

>prot_H-elongata_contig86002.16181.1 ID=prot_H-elongata_contig86002.16181.1|Name=mRNA_H-elongata_contig86002.16181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
DFSGIASAPQSQNSRNDYWIGDSGASCHMTNDASKIYNVRIPSFDKREVI
TSDGTRLRVKCIGNIDVVFHGRSDEPITLCDVSYVPDLNFKLFSFHKALK
TH
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mRNA from alignment at H-elongata_contig86002:18..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86002.16181.1 ID=mRNA_H-elongata_contig86002.16181.1|Name=mRNA_H-elongata_contig86002.16181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig86002:18..323- (Himanthalia elongata Himel1 dioecious)
GATTTTAGTGGGATTGCATCTGCACCACAATCTCAGAATAGCCGTAACGA
TTATTGGATAGGTGACAGTGGCGCATCGTGTCACATGACGAACGACGCAT
CCAAAATTTATAATGTGAGGATTCCTTCATTTGATAAACGTGAAGTAATT
ACTAGTGATGGAACGAGACTAAGGGTAAAATGTATCGGTAACATCGACGT
AGTATTCCATGGGAGGAGCGATGAACCGATCACGTTATGCGATGTATCGT
ACGTACCGGATTTGAATTTCAAACTTTTTTCGTTTCACAAGGCACTTAAA
ACACAT
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Coding sequence (CDS) from alignment at H-elongata_contig86002:18..323-

>mRNA_H-elongata_contig86002.16181.1 ID=mRNA_H-elongata_contig86002.16181.1|Name=mRNA_H-elongata_contig86002.16181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig86002:18..323- (Himanthalia elongata Himel1 dioecious)
GATTTTAGTGGGATTGCATCTGCACCACAATCTCAGAATAGCCGTAACGA
TTATTGGATAGGTGACAGTGGCGCATCGTGTCACATGACGAACGACGCAT
CCAAAATTTATAATGTGAGGATTCCTTCATTTGATAAACGTGAAGTAATT
ACTAGTGATGGAACGAGACTAAGGGTAAAATGTATCGGTAACATCGACGT
AGTATTCCATGGGAGGAGCGATGAACCGATCACGTTATGCGATGTATCGT
ACGTACCGGATTTGAATTTCAAACTTTTTTCGTTTCACAAGGCACTTAAA
ACACATGATTTTAGTGGGATTGCATCTGCACCACAATCTCAGAATAGCCG
TAACGATTATTGGATAGGTGACAGTGGCGCATCGTGTCACATGACGAACG
ACGCATCCAAAATTTATAATGTGAGGATTCCTTCATTTGATAAACGTGAA
GTAATTACTAGTGATGGAACGAGACTAAGGGTAAAATGTATCGGTAACAT
CGACGTAGTATTCCATGGGAGGAGCGATGAACCGATCACGTTATGCGATG
TATCGTACGTACCGGATTTGAATTTCAAACTTTTTTCGTTTCACAAGGCA
CTTAAAACACAT
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