mRNA_H-elongata_contig85998.16180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85998.16180.1
Unique NamemRNA_H-elongata_contig85998.16180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85998.16180.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 3.320e-58
Identity = 251/725 (34.62%), Postives = 288/725 (39.72%), Query Frame = 3 
Query:    3 QLEPLPELPDTGEDRFFSKEALDYQWPAAPVDSSPFPTWGSTAAEISVIGGTVAAAXXXXXXXXXXXXXXXXXXXXP-----------------------------------------EPTRGIKRALPKPTSQHQQPTAPEQQRRQPTIADRTVFLRQRLGGEILSSGNSSTSTFSDTASDD---------VAGDWELGS------GVRSGGVRR--------MGKGYAPPFPLKVIGSGVGLGRAVGAVATSVA---PPVIAAAEAGSQVSNXXXXXXXXXXXXXXXXXXXXXSVANGPRESSNGVSSSKIGGRGGVTDTVG----NRTGCGGRYASWDALVKPFKQQWDHIEPPPEELAAAEAWQGTSNGIG-----------------------IGEVLCSRFSPRPQPGDTTMFSVEQCSARAHPTAVASYVLRVRCGSGAHIVRRTWDDLVTLCTMLGTSTPTPPRSDVAPRGVSDIEMGIRGGGAGEEGSRSLTTAVAGSGTTTTTPPIGLEFAPPDVLGREAASGFLRDLLERTGMVWATPTRCFLELEYLDGTLRGGPADDRRERVSRQVASVAASXXXXXXATAVKIPITLLSGTLTETQRQQAARAGGVKNAFQGVPAPAPVPCLTVGAPPKTWLG-------------------------------APRPALSLMAPHPDAARDLAAVWRCLGELGADTFSSMPFPRTWAATP 1802
            +L+PLPELP++ ++RFF+KEAL++Q+P  P ++  FPTWGST AE++ IG      XXXXXXXXXXXXXXXXXXXX                                           P RG    +  P                    DRTVFLRQRLGGE +                            G+W+ G       G+RSG  RR        +  G                         SV    P  ++  EA +Q +         XXXXXXXXXXXXX                                 N  G GG YASWD LVKP KQQWDHIE P     +AEA  G   G G                           +CS FS +P P  T  FSVEQCSA+AHP AVASYVLRVRC  GAHIVRRTWDD+V LCTML          DV  R                                       +EF P DVL  +AASGFL+DLL R GM WATP R FLELEYLDGTLRGG ADD R   +RQVAS+AA        TA             +                                                                       PRPA +L A HPDAARDLAAV RCLGELGA  F+S       AA P
Sbjct:    8 ELDPLPELPESADERFFTKEALEFQYPTGPAENPLFPTWGSTGAEMAAIGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPIRGGVHTMAVPXXXX-------------GAGDRTVFLRQRLGGESVXXXXXXXXXXXXXXXXXXXXXXXXXXAGGEWDGGRDAAGGHGLRSGSKRRGVRTKKSYLQSGAXXXXXXXXXXXXXXXXXXXXXXXXSVVLIGPQAVSCTEAPTQAALRTRYGGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCNSGGLGGGYASWDVLVKPLKQQWDHIEGP-----SAEARGGRRGGAGPKPSAYSAXXXXXXXXXXXXXXXXXXXVCSVFSAQPCPNSTAAFSVEQCSAQAHPAAVASYVLRVRCAGGAHIVRRTWDDIVNLCTMLD--------RDVLARSAKKEAA--------------------------------IEFTPADVLAPDAASGFLKDLLVRPGMAWATPARRFLELEYLDGTLRGGVADDSRATAARQVASLAA------FTTAXXXXXXXXXXXXXDVVESNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPRPAQTLPA-HPDAARDLAAVCRCLGELGASAFTSSSPALRGAAAP 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85998.16180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE3.320e-5834.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85998contigH-elongata_contig85998:689..2588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1900
Cds size1383
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85998.16180.1prot_H-elongata_contig85998.16180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85998 1171..2553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.3771346-UTR-H-elongata_contig85998:688..11701622931263.3771346-UTR-H-elongata_contig85998:688..1170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85998 689..1170 +
1691679764.8570864-UTR-H-elongata_contig85998:688..11701691679764.8570864-UTR-H-elongata_contig85998:688..1170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85998 689..1170 +
1622931263.461588-UTR-H-elongata_contig85998:2553..25881622931263.461588-UTR-H-elongata_contig85998:2553..2588Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85998 2554..2588 +
1691679764.876712-UTR-H-elongata_contig85998:2553..25881691679764.876712-UTR-H-elongata_contig85998:2553..2588Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85998 2554..2588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.4477527-CDS-H-elongata_contig85998:1170..25531622931263.4477527-CDS-H-elongata_contig85998:1170..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85998 1171..2553 +
1691679764.8687668-CDS-H-elongata_contig85998:1170..25531691679764.8687668-CDS-H-elongata_contig85998:1170..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85998 1171..2553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85998.16180.1

>prot_H-elongata_contig85998.16180.1 ID=prot_H-elongata_contig85998.16180.1|Name=mRNA_H-elongata_contig85998.16180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=461bp
MGKGYAPPFPLKVIGSGVGLGRAVGAVATSVAPPVIAAAEAGSQVSNNKP
ARRKRRSTGSASNERRKKSVANGPRESSNGVSSSKIGGRGGVTDTVGNRT
GCGGRYASWDALVKPFKQQWDHIEPPPEELAAAEAWQGTSNGIGIGEVLC
SRFSPRPQPGDTTMFSVEQCSARAHPTAVASYVLRVRCGSGAHIVRRTWD
DLVTLCTMLGTSTPTPPRSDVAPRGVSDIEMGIRGGGAGEEGSRSLTTAV
AGSGTTTTTPPIGLEFAPPDVLGREAASGFLRDLLERTGMVWATPTRCFL
ELEYLDGTLRGGPADDRRERVSRQVASVAASVASAVAATAVKIPITLLSG
TLTETQRQQAARAGGVKNAFQGVPAPAPVPCLTVGAPPKTWLGAPRPALS
LMAPHPDAARDLAAVWRCLGELGADTFSSMPFPRTWAATPAAGNRIGVVA
PQRGGVAIVA*
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mRNA from alignment at H-elongata_contig85998:689..2588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85998.16180.1 ID=mRNA_H-elongata_contig85998.16180.1|Name=mRNA_H-elongata_contig85998.16180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1900bp|location=Sequence derived from alignment at H-elongata_contig85998:689..2588+ (Himanthalia elongata Himel1 dioecious)
AGCAACTGGAACCCTTGCCTGAGCTGCCGGATACTGGGGAAGACCGTTTC
TTCAGCAAAGAGGCCCTCGATTATCAGTGGCCTGCGGCACCGGTGGATAG
TTCTCCTTTCCCCACGTGGGGCTCGACGGCCGCGGAGATATCGGTCATCG
GTGGAACTGTAGCGGCGGCGGCGGCATCGGCAGGTTCTACCACCGTAACA
CCTTCGCCGGCGCTCTCGACTCCGACGCCGCCAGAGCCCACACGTGGAAT
CAAGCGCGCCCTGCCCAAGCCGACTTCGCAGCATCAACAGCCGACCGCCC
CCGAGCAGCAGCGGAGACAGCCGACAATTGCGGACAGGACGGTGTTCTTG
CGGCAGCGACTGGGCGGCGAGATCTTGTCCTCAGGCAACTCTTCGACGAG
CACCTTTTCGGACACGGCGAGCGATGACGTAGCTGGGGACTGGGAACTCG
GGAGTGGTGTCCGGAGCGGTGGTGTACGTCGGATGGGGAAGGGCTATGCG
CCTCCATTTCCTCTTAAAGTCATCGGCAGTGGTGTGGGGCTTGGCAGGGC
CGTTGGTGCGGTGGCAACAAGTGTGGCGCCCCCCGTGATAGCAGCGGCAG
AGGCTGGTTCTCAAGTAAGCAACAACAAACCAGCGCGCAGAAAAAGGCGG
AGCACTGGATCAGCGTCGAATGAGAGACGTAAAAAATCCGTGGCGAACGG
ACCACGAGAATCAAGCAACGGCGTTTCATCGTCGAAAATCGGCGGGCGCG
GCGGCGTTACCGATACGGTCGGCAACAGGACCGGGTGCGGAGGGAGGTAC
GCCTCGTGGGACGCGCTGGTGAAACCATTCAAGCAGCAGTGGGACCACAT
CGAGCCGCCTCCGGAAGAATTGGCGGCGGCGGAAGCTTGGCAGGGCACTT
CGAATGGCATCGGCATTGGCGAAGTCCTGTGCTCACGCTTCTCTCCCCGG
CCACAGCCCGGCGACACCACGATGTTCAGCGTAGAGCAGTGCTCCGCCCG
GGCTCACCCCACGGCGGTGGCCTCCTACGTTTTGCGTGTACGGTGCGGCA
GCGGCGCGCATATCGTGCGCCGCACGTGGGACGACCTCGTCACCCTGTGC
ACCATGCTCGGGACGTCCACTCCCACGCCCCCAAGGAGCGACGTCGCGCC
GCGCGGAGTTTCTGATATAGAAATGGGAATCCGTGGCGGGGGTGCAGGTG
AAGAAGGCTCAAGGTCTTTAACGACTGCTGTCGCTGGATCGGGCACCACA
ACCACAACGCCTCCCATCGGGCTGGAGTTCGCACCGCCGGACGTCTTAGG
GCGAGAAGCGGCCTCGGGTTTCCTGCGGGACCTCTTGGAGAGAACTGGTA
TGGTCTGGGCGACGCCGACGAGATGTTTCCTCGAACTGGAGTACCTCGAC
GGCACGCTCAGGGGCGGCCCGGCCGATGACCGCAGGGAAAGGGTGTCCAG
GCAGGTGGCTTCGGTTGCTGCGTCTGTTGCATCGGCGGTGGCCGCAACAG
CGGTGAAGATTCCGATCACGCTACTGTCGGGTACGTTGACGGAGACGCAG
CGGCAGCAAGCAGCAAGAGCTGGGGGTGTCAAAAATGCCTTTCAAGGTGT
TCCCGCGCCTGCTCCGGTGCCGTGCCTCACGGTCGGCGCGCCGCCAAAGA
CCTGGCTCGGGGCACCACGCCCCGCCCTAAGCTTGATGGCTCCTCATCCG
GACGCAGCAAGGGACCTGGCGGCGGTGTGGCGGTGTCTCGGAGAGCTGGG
GGCGGATACCTTTAGCTCTATGCCCTTCCCGCGTACTTGGGCGGCGACTC
CTGCGGCTGGAAACCGCATTGGTGTCGTTGCTCCGCAACGGGGAGGCGTT
GCAATAGTGGCTTGAATGGAACGTTGTCCAACCGAGAACGGTTTCATGTG
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Coding sequence (CDS) from alignment at H-elongata_contig85998:689..2588+

>mRNA_H-elongata_contig85998.16180.1 ID=mRNA_H-elongata_contig85998.16180.1|Name=mRNA_H-elongata_contig85998.16180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2766bp|location=Sequence derived from alignment at H-elongata_contig85998:689..2588+ (Himanthalia elongata Himel1 dioecious)
ATGGGGAAGGGCTATGCGCCTCCATTTCCTCTTAAAGTCATCGGCAGTGG
TGTGGGGCTTGGCAGGGCCGTTGGTGCGGTGGCAACAAGTGTGGCGCCCC
CCGTGATAGCAGCGGCAGAGGCTGGTTCTCAAGTAAGCAACAACAAACCA
GCGCGCAGAAAAAGGCGGAGCACTGGATCAGCGTCGAATGAGAGACGTAA
AAAATCCGTGGCGAACGGACCACGAGAATCAAGCAACGGCGTTTCATCGT
CGAAAATCGGCGGGCGCGGCGGCGTTACCGATACGGTCGGCAACAGGACC
GGGTGCGGAGGGAGGTACGCCTCGTGGGACGCGCTGGTGAAACCATTCAA
GCAGCAGTGGGACCACATCGAGCCGCCTCCGGAAGAATTGGCGGCGGCGG
AAGCTTGGCAGGGCACTTCGAATGGCATCGGCATTGGCGAAGTCCTGTGC
TCACGCTTCTCTCCCCGGCCACAGCCCGGCGACACCACGATGTTCAGCGT
AGAGCAGTGCTCCGCCCGGGCTCACCCCACGGCGGTGGCCTCCTACGTTT
TGCGTGTACGGTGCGGCAGCGGCGCGCATATCGTGCGCCGCACGTGGGAC
GACCTCGTCACCCTGTGCACCATGCTCGGGACGTCCACTCCCACGCCCCC
AAGGAGCGACGTCGCGCCGCGCGGAGTTTCTGATATAGAAATGGGAATCC
GTGGCGGGGGTGCAGGTGAAGAAGGCTCAAGGTCTTTAACGACTGCTGTC
GCTGGATCGGGCACCACAACCACAACGCCTCCCATCGGGCTGGAGTTCGC
ACCGCCGGACGTCTTAGGGCGAGAAGCGGCCTCGGGTTTCCTGCGGGACC
TCTTGGAGAGAACTGGTATGGTCTGGGCGACGCCGACGAGATGTTTCCTC
GAACTGGAGTACCTCGACGGCACGCTCAGGGGCGGCCCGGCCGATGACCG
CAGGGAAAGGGTGTCCAGGCAGGTGGCTTCGGTTGCTGCGTCTGTTGCAT
CGGCGGTGGCCGCAACAGCGGTGAAGATTCCGATCACGCTACTGTCGGGT
ACGTTGACGGAGACGCAGCGGCAGCAAGCAGCAAGAGCTGGGGGTGTCAA
AAATGCCTTTCAAGGTGTTCCCGCGCCTGCTCCGGTGCCGTGCCTCACGG
TCGGCGCGCCGCCAAAGACCTGGCTCGGGGCACCACGCCCCGCCCTAAGC
TTGATGGCTCCTCATCCGGACGCAGCAAGGGACCTGGCGGCGGTGTGGCG
GTGTCTCGGAGAGCTGGGGGCGGATACCTTTAGCTCTATGCCCTTCCCGC
GTACTTGGGCGGCGACTCCTGCGGCTGGAAACCGCATTGGTGTCGTTGCT
CCGCAACGGGGAGGCGTTGCAATAGTGGCTTGAATGGGGAAGGGCTATGC
GCCTCCATTTCCTCTTAAAGTCATCGGCAGTGGTGTGGGGCTTGGCAGGG
CCGTTGGTGCGGTGGCAACAAGTGTGGCGCCCCCCGTGATAGCAGCGGCA
GAGGCTGGTTCTCAAGTAAGCAACAACAAACCAGCGCGCAGAAAAAGGCG
GAGCACTGGATCAGCGTCGAATGAGAGACGTAAAAAATCCGTGGCGAACG
GACCACGAGAATCAAGCAACGGCGTTTCATCGTCGAAAATCGGCGGGCGC
GGCGGCGTTACCGATACGGTCGGCAACAGGACCGGGTGCGGAGGGAGGTA
CGCCTCGTGGGACGCGCTGGTGAAACCATTCAAGCAGCAGTGGGACCACA
TCGAGCCGCCTCCGGAAGAATTGGCGGCGGCGGAAGCTTGGCAGGGCACT
TCGAATGGCATCGGCATTGGCGAAGTCCTGTGCTCACGCTTCTCTCCCCG
GCCACAGCCCGGCGACACCACGATGTTCAGCGTAGAGCAGTGCTCCGCCC
GGGCTCACCCCACGGCGGTGGCCTCCTACGTTTTGCGTGTACGGTGCGGC
AGCGGCGCGCATATCGTGCGCCGCACGTGGGACGACCTCGTCACCCTGTG
CACCATGCTCGGGACGTCCACTCCCACGCCCCCAAGGAGCGACGTCGCGC
CGCGCGGAGTTTCTGATATAGAAATGGGAATCCGTGGCGGGGGTGCAGGT
GAAGAAGGCTCAAGGTCTTTAACGACTGCTGTCGCTGGATCGGGCACCAC
AACCACAACGCCTCCCATCGGGCTGGAGTTCGCACCGCCGGACGTCTTAG
GGCGAGAAGCGGCCTCGGGTTTCCTGCGGGACCTCTTGGAGAGAACTGGT
ATGGTCTGGGCGACGCCGACGAGATGTTTCCTCGAACTGGAGTACCTCGA
CGGCACGCTCAGGGGCGGCCCGGCCGATGACCGCAGGGAAAGGGTGTCCA
GGCAGGTGGCTTCGGTTGCTGCGTCTGTTGCATCGGCGGTGGCCGCAACA
GCGGTGAAGATTCCGATCACGCTACTGTCGGGTACGTTGACGGAGACGCA
GCGGCAGCAAGCAGCAAGAGCTGGGGGTGTCAAAAATGCCTTTCAAGGTG
TTCCCGCGCCTGCTCCGGTGCCGTGCCTCACGGTCGGCGCGCCGCCAAAG
ACCTGGCTCGGGGCACCACGCCCCGCCCTAAGCTTGATGGCTCCTCATCC
GGACGCAGCAAGGGACCTGGCGGCGGTGTGGCGGTGTCTCGGAGAGCTGG
GGGCGGATACCTTTAGCTCTATGCCCTTCCCGCGTACTTGGGCGGCGACT
CCTGCGGCTGGAAACCGCATTGGTGTCGTTGCTCCGCAACGGGGAGGCGT
TGCAATAGTGGCTTGA
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