mRNA_H-elongata_contig85873.16170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig85873.16170.1
Unique Name	mRNA_H-elongata_contig85873.16170.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A6H5KXE2_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXE2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.860e-23
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            +KF+G T FAAG+WIGVELDL+EGKNDG VNGVQYFD R GHGLFVKKAQV
Sbjct:   23 VKFIGPTDFAAGEWIGVELDLQEGKNDGLVNGVQYFDCREGHGLFVKKAQV 73

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: D8LH61_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH61_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.620e-21
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            +KF+G T FAAG+WIGVELDL+EGKNDG VNGVQYFD R GHGLFVKKAQV
Sbjct:   23 VKFIGPTDFAAGEWIGVELDLQEGKNDGLVNGVQYFDCREGHGLFVKKAQV 73

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A812KX20_9DINO (Dctn1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812KX20_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 3.560e-17
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            +KF+GTTQFAAG WIGVELD  +GKNDGT+ G +YFD ++GHG+F + A V
Sbjct:   48 VKFVGTTQFAAGPWIGVELDTPDGKNDGTIQGERYFDCKAGHGIFARPAAV 98

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A813BQS5_9DINO (DCTN1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813BQS5_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 1.360e-16
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            +KF+GTTQFAAG WIGVELD  +GKNDGT+ G +YFD ++GHG+F + A V
Sbjct:   33 VKFVGTTQFAAGPWIGVELDTPDGKNDGTIQGERYFDCKAGHGIFARPAAV 83

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A812LWC4_9DINO (Dctn1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812LWC4_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 7.690e-16
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            +KF+GTTQFAAG WIGVELD  +GKNDGT+ G +YFD ++GHG+F + A V
Sbjct:  227 VKFVGTTQFAAGPWIGVELDTPDGKNDGTIQGERYFDCKAGHGIFARPAAV 277

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A1W0A174_9STRA (Glycoside hydrolase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A174_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.790e-16
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            ++FMGTT+FA GDW+GVELD  EGKNDG +NGV+YF     +GLF KK+QV
Sbjct:   17 VRFMGTTEFAQGDWVGVELDAPEGKNDGEINGVRYFQCEPNYGLFAKKSQV 67

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A067CIY9_SAPPC (CAP-Gly domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CIY9_SAPPC)

HSP 1 Score: 76.6 bits (187), Expect = 5.710e-15
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            ++F+GTT+FA GDW+GVELD  EGKNDG +NGV+YF      GLF KK+QV
Sbjct:   17 VRFLGTTEFAQGDWVGVELDAPEGKNDGEINGVRYFQCEPNFGLFAKKSQV 67

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A0B6Y5I3_9EUPU (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Y5I3_9EUPU)

HSP 1 Score: 71.6 bits (174), Expect = 7.340e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVK 141
            +KF+GT QFA+G WIGVELDL EGKNDG V G++YF  R+ HG+FV+
Sbjct:   46 VKFVGTVQFASGVWIGVELDLPEGKNDGAVKGIRYFQCRALHGVFVQ 92

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A1V9Z688_9STRA (Glycoside hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z688_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.460e-14
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            ++F+GTT+FA GDW+GVELD  +GKNDG +NGV+YF     +GLF KK+QV
Sbjct:   17 VRFLGTTEFAQGDWVGVELDGPDGKNDGEINGVRYFQCEPNYGLFAKKSQV 67

[Close]

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Match: A0A485LS03_9STRA (Aste57867_25002 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS03_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.990e-14
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1

Query:    1 IKFMGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQV 153
            ++FMGTT FA GDW+G+ELD  +GKNDG +NGV+YF      GLF KK+QV
Sbjct:   17 VRFMGTTDFAQGDWVGIELDTPDGKNDGEINGVRYFTCEPSFGLFAKKSQV 67

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot

BLAST of mRNA_H-elongata_contig85873.16170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KXE2_9PHAE	5.860e-23	82.35	CAP-Gly domain-containing protein n=1 Tax=Ectocarp...	[more]
D8LH61_ECTSI	8.620e-21	82.35	CAP-Gly domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A812KX20_9DINO	3.560e-17	64.71	Dctn1 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta...	[more]
A0A813BQS5_9DINO	1.360e-16	64.71	DCTN1 protein n=1 Tax=Symbiodinium necroappetens T...	[more]
A0A812LWC4_9DINO	7.690e-16	64.71	Dctn1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta...	[more]
A0A1W0A174_9STRA	8.790e-16	64.71	Glycoside hydrolase n=1 Tax=Thraustotheca clavata ...	[more]
A0A067CIY9_SAPPC	5.710e-15	62.75	CAP-Gly domain-containing protein n=2 Tax=Saproleg...	[more]
A0A0B6Y5I3_9EUPU	7.340e-15	65.96	CAP-Gly domain-containing protein (Fragment) n=1 T...	[more]
A0A1V9Z688_9STRA	1.460e-14	60.78	Glycoside hydrolase n=1 Tax=Achlya hypogyna TaxID=...	[more]
A0A485LS03_9STRA	1.990e-14	60.78	Aste57867_25002 protein n=1 Tax=Aphanomyces stella...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig85873	contig	H-elongata_contig85873:193..360 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	87.8
Seed ortholog evalue	1.6e-15
Seed eggNOG ortholog	2880.D8LH61
KEGG ko	ko:K04648,ko:K10421,ko:K11806
KEGG Pathway	ko04150,ko04962,ko05016,map04150,map04962,map05016
EggNOG free text desc.	microtubule binding
EggNOG OGs	COG5244@1,KOG0971@2759
COG Functional cat.	D
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03009,ko03036,ko04121,ko04131,ko04812
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	168
Cds size	159
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931262.2263472-CDS-H-elongata_contig85873:192..351	1622931262.2263472-CDS-H-elongata_contig85873:192..351	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig85873 193..351 -
1691679764.3103552-CDS-H-elongata_contig85873:192..351	1691679764.3103552-CDS-H-elongata_contig85873:192..351	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig85873 193..351 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931262.2412915-UTR-H-elongata_contig85873:351..360	1622931262.2412915-UTR-H-elongata_contig85873:351..360	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig85873 352..360 -
1691679764.3224072-UTR-H-elongata_contig85873:351..360	1691679764.3224072-UTR-H-elongata_contig85873:351..360	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig85873 352..360 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig85873.16170.1	prot_H-elongata_contig85873.16170.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig85873 193..351 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig85873:193..360-
coding sequence from alignment at H-elongata_contig85873:193..360-

protein sequence of mRNA_H-elongata_contig85873.16170.1

>prot_H-elongata_contig85873.16170.1 ID=prot_H-elongata_contig85873.16170.1|Name=mRNA_H-elongata_contig85873.16170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MGTTQFAAGDWIGVELDLEEGKNDGTVNGVQYFDGRSGHGLFVKKAQVTT
CS*

mRNA from alignment at H-elongata_contig85873:193..360-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig85873.16170.1 ID=mRNA_H-elongata_contig85873.16170.1|Name=mRNA_H-elongata_contig85873.16170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig85873:193..360- (Himanthalia elongata Himel1 dioecious)
ATAAAATTCATGGGGACGACTCAATTTGCTGCTGGAGACTGGATCGGGGT
GGAGCTCGACCTGGAAGAAGGGAAGAACGACGGAACGGTCAATGGCGTTC
AATACTTCGATGGGCGTTCTGGACACGGACTCTTTGTGAAGAAGGCGCAG
GTGACCACCTGCTCGTGA

Coding sequence (CDS) from alignment at H-elongata_contig85873:193..360-

>mRNA_H-elongata_contig85873.16170.1 ID=mRNA_H-elongata_contig85873.16170.1|Name=mRNA_H-elongata_contig85873.16170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig85873:193..360- (Himanthalia elongata Himel1 dioecious)
ATGGGGACGACTCAATTTGCTGCTGGAGACTGGATCGGGGTGGAGCTCGA
CCTGGAAGAAGGGAAGAACGACGGAACGGTCAATGGCGTTCAATACTTCG
ATGGGCGTTCTGGACACGGACTCTTTGTGAAGAAGGCGCAGGTGACCACC
TGCTCGTGAATGGGGACGACTCAATTTGCTGCTGGAGACTGGATCGGGGT
GGAGCTCGACCTGGAAGAAGGGAAGAACGACGGAACGGTCAATGGCGTTC
AATACTTCGATGGGCGTTCTGGACACGGACTCTTTGTGAAGAAGGCGCAG
GTGACCACCTGCTCGTGA