mRNA_H-elongata_contig85833.16163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85833.16163.1
Unique NamemRNA_H-elongata_contig85833.16163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85833.16163.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 8.890e-68
Identity = 125/197 (63.45%), Postives = 143/197 (72.59%), Query Frame = 1 
Query:    1 QNEAPVLYPRMDLPGPVRILDDDVRYVAKQRELAADMAKSAYYITPRNAVKDVERYSDGFTLNDQQRRPLASQLSAEAKRYLPPELTDREAEPSPSMAPGALRGLKPLPAFDPKSLTALEDRERKSAETGAAERDXXXXXXXXXXXXXXXXXXXXXAGMMSDVEDD-------DDYAVDHYESGDDSVGDDEPAAVF 570
            Q+EAPVLYPRMDLPGP+RIL+DDV +VAKQRELAADM+KS YYITP+ AVKDVERYSDG      + + LASQLSA  KR+LPPELTDR A  + + A G L GLKPLPAFD KSLTALED+ERKSAETG AE++                     AGM+SDVE +        DYAVDHYESG++S GDDEPAAVF
Sbjct:    5 QSEAPVLYPRMDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQSLASQLSAGMKRHLPPELTDRPAIGT-TAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKED----------------AGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85833.16163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI8.890e-6863.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85833contigH-elongata_contig85833:1657..2229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase III, subunit Rpc31
Ec32 orthologEc-04_006380.1
Exons1
Model size573
Cds size543
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931261.6939263-CDS-H-elongata_contig85833:1656..21991622931261.6939263-CDS-H-elongata_contig85833:1656..2199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85833 1657..2199 -
1691679764.1395247-CDS-H-elongata_contig85833:1656..21991691679764.1395247-CDS-H-elongata_contig85833:1656..2199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85833 1657..2199 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931261.7127042-UTR-H-elongata_contig85833:2199..22291622931261.7127042-UTR-H-elongata_contig85833:2199..2229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85833 2200..2229 -
1691679764.1484687-UTR-H-elongata_contig85833:2199..22291691679764.1484687-UTR-H-elongata_contig85833:2199..2229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85833 2200..2229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85833.16163.1prot_H-elongata_contig85833.16163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85833 1657..2199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85833.16163.1

>prot_H-elongata_contig85833.16163.1 ID=prot_H-elongata_contig85833.16163.1|Name=mRNA_H-elongata_contig85833.16163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MDLPGPVRILDDDVRYVAKQRELAADMAKSAYYITPRNAVKDVERYSDGF
TLNDQQRRPLASQLSAEAKRYLPPELTDREAEPSPSMAPGALRGLKPLPA
FDPKSLTALEDRERKSAETGAAERDKDKEKDKDKDDGDADADADGDAGMM
SDVEDDDDYAVDHYESGDDSVGDDEPAAVF*
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mRNA from alignment at H-elongata_contig85833:1657..2229-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85833.16163.1 ID=mRNA_H-elongata_contig85833.16163.1|Name=mRNA_H-elongata_contig85833.16163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig85833:1657..2229- (Himanthalia elongata Himel1 dioecious)
CAGAATGAAGCTCCCGTGCTTTATCCTCGAATGGACCTACCCGGACCTGT
TCGAATCCTGGACGACGACGTCCGCTACGTTGCCAAACAGCGAGAGCTGG
CGGCAGATATGGCGAAGTCTGCCTACTACATCACCCCCAGGAACGCGGTC
AAGGACGTGGAGAGATACTCAGACGGGTTCACCCTGAACGATCAACAGCG
ACGGCCCCTCGCTAGCCAGCTGTCCGCCGAGGCGAAGCGATATTTACCTC
CAGAGCTGACGGACAGGGAAGCCGAGCCTTCGCCGTCCATGGCTCCTGGT
GCTCTGCGAGGCCTCAAGCCTCTGCCGGCGTTCGACCCCAAGTCGCTCAC
CGCTTTGGAGGACAGGGAAAGAAAGAGCGCCGAGACTGGGGCGGCGGAGA
GGGACAAGGATAAAGAAAAGGATAAAGATAAAGACGATGGTGATGCTGAT
GCTGATGCTGATGGTGATGCTGGGATGATGAGCGACGTTGAGGATGACGA
TGACTATGCGGTGGACCACTACGAGAGCGGGGACGATAGCGTTGGGGACG
ACGAGCCTGCAGCGGTGTTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig85833:1657..2229-

>mRNA_H-elongata_contig85833.16163.1 ID=mRNA_H-elongata_contig85833.16163.1|Name=mRNA_H-elongata_contig85833.16163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig85833:1657..2229- (Himanthalia elongata Himel1 dioecious)
ATGGACCTACCCGGACCTGTTCGAATCCTGGACGACGACGTCCGCTACGT
TGCCAAACAGCGAGAGCTGGCGGCAGATATGGCGAAGTCTGCCTACTACA
TCACCCCCAGGAACGCGGTCAAGGACGTGGAGAGATACTCAGACGGGTTC
ACCCTGAACGATCAACAGCGACGGCCCCTCGCTAGCCAGCTGTCCGCCGA
GGCGAAGCGATATTTACCTCCAGAGCTGACGGACAGGGAAGCCGAGCCTT
CGCCGTCCATGGCTCCTGGTGCTCTGCGAGGCCTCAAGCCTCTGCCGGCG
TTCGACCCCAAGTCGCTCACCGCTTTGGAGGACAGGGAAAGAAAGAGCGC
CGAGACTGGGGCGGCGGAGAGGGACAAGGATAAAGAAAAGGATAAAGATA
AAGACGATGGTGATGCTGATGCTGATGCTGATGGTGATGCTGGGATGATG
AGCGACGTTGAGGATGACGATGACTATGCGGTGGACCACTACGAGAGCGG
GGACGATAGCGTTGGGGACGACGAGCCTGCAGCGGTGTTCTAGATGGACC
TACCCGGACCTGTTCGAATCCTGGACGACGACGTCCGCTACGTTGCCAAA
CAGCGAGAGCTGGCGGCAGATATGGCGAAGTCTGCCTACTACATCACCCC
CAGGAACGCGGTCAAGGACGTGGAGAGATACTCAGACGGGTTCACCCTGA
ACGATCAACAGCGACGGCCCCTCGCTAGCCAGCTGTCCGCCGAGGCGAAG
CGATATTTACCTCCAGAGCTGACGGACAGGGAAGCCGAGCCTTCGCCGTC
CATGGCTCCTGGTGCTCTGCGAGGCCTCAAGCCTCTGCCGGCGTTCGACC
CCAAGTCGCTCACCGCTTTGGAGGACAGGGAAAGAAAGAGCGCCGAGACT
GGGGCGGCGGAGAGGGACAAGGATAAAGAAAAGGATAAAGATAAAGACGA
TGGTGATGCTGATGCTGATGCTGATGGTGATGCTGGGATGATGAGCGACG
TTGAGGATGACGATGACTATGCGGTGGACCACTACGAGAGCGGGGACGAT
AGCGTTGGGGACGACGAGCCTGCAGCGGTGTTCTAG
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