mRNA_H-elongata_contig85775.16161.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85775.16161.1
Unique NamemRNA_H-elongata_contig85775.16161.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: D7FU67_ECTSI (Glucose-6-phosphate isomerase, cytosolic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU67_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.990e-45
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 GQEDQAEETLLRLIRDPYHLGDASWTPENAAETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKVSS 309
            GQEDQAEETLL+LIRDPY+LGD SW  ++AAETAEWRRL  HQKRIK+ HL+DV+   +RSLALSAE+EGTILDYSRMNVSQLTMKLL DLAKRQ L +++++
Sbjct:  117 GQEDQAEETLLKLIRDPYNLGDVSWLAKSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITA 219
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BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: A0A836C893_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C893_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.970e-22
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:   31 LRLIRDPYHLGDASWTPENAAETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKVSS 309
            +  IRD Y LG     P++ + TAEWRRL AH + IK MHLRDV+ D  R  ALSAE+EG+ LDYSRM V+Q TM LL+ LA+RQ LK K+ +
Sbjct:    3 MESIRDSYSLG-MKPQPKSVSATAEWRRLKAHARHIKRMHLRDVMGDAARCEALSAEFEGSFLDYSRMQVTQRTMDLLYALARRQNLKLKIEA 94
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BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: A0A836CFZ0_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.280e-20
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:   31 LRLIRDPYHLGDASWTPENAAETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKVSS 309
            +  IRD Y LG     P++   TAEWRRL  H + I  MHLRDV+    R  ALSAE+EG+ LDYSRM V+Q TM LL+ LA+RQ L+EK+++
Sbjct:    3 MESIRDTYSLG-LKPQPKSVTATAEWRRLKVHARHIAKMHLRDVLGVASRCEALSAEFEGSFLDYSRMQVTQRTMDLLYALARRQRLREKIAA 94
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: A0A7J7IM63_9RHOD (Glucose-6-phosphate isomerase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM63_9RHOD)

HSP 1 Score: 81.3 bits (199), Expect = 9.710e-16
Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   91 AETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKV 303
            +ETAEW+ L+AH + IK +HLR++++D ER  +L AE++G  LDYSR  V++ TM+LLFDLA+R  L +K+
Sbjct:   79 SETAEWKGLEAHSEEIKRLHLRELMRDAERVRSLRAEFDGIYLDYSRQRVNRQTMQLLFDLARRTRLTDKI 149
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: M1V5Y9_CYAM1 (Glucose-6-phosphate isomerase n=2 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V5Y9_CYAM1)

HSP 1 Score: 74.3 bits (181), Expect = 2.660e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:   91 AETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKV 303
            +ETAEWRRL  H   I  +HLR+++QD +R  +L AEY+G  LDYSR  V++ T++LLF LA+R  L +K+
Sbjct:  200 SETAEWRRLVEHASEIDRLHLRELMQDVDRVRSLRAEYDGIYLDYSRQRVTKDTIELLFALARRARLVDKI 270
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: A0A7S1XLF0_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLF0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.990e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   91 AETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKVSS 309
            ++T EW  L A  +RI++ HL+D+IQD ER   ++AE EG  LDYSR   ++ TM LLF LA+RQ L EK+ +
Sbjct:  227 SKTPEWSALQAEAERIENTHLKDLIQDAERVDYMAAEGEGIFLDYSRQRATRQTMSLLFQLAERQNLMEKIKA 299
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: A0A7R9Y962_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y962_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.740e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   91 AETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKVSS 309
            ++T EW  L    +RI++ HLR+++QDT+R   + AE EG ILDYSR   +  TM+LLF+LA RQ LKEK+ +
Sbjct:  106 SKTPEWAALKNEVERIQETHLRELMQDTDRVDFMMAEAEGVILDYSRQRATLNTMRLLFELADRQNLKEKIEA 178
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: A0A1V9ZYZ2_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYZ2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.670e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   91 AETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKVSS 309
            +ET EW+RL AH   ++  HLR +++D  R+ AL AE+ G  LDYSR N +  T+ LLFDLA++  L++K+SS
Sbjct:    3 SETNEWKRLLAHATAVQGTHLRQLLKDEARNAALVAEHNGITLDYSRQNATLETIDLLFDLAEKAQLRQKLSS 75
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: A0A0E0E036_9ORYZ (Glucose-6-phosphate isomerase n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0E036_9ORYZ)

HSP 1 Score: 71.6 bits (174), Expect = 2.390e-12
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:   25 TLLRLIRDPYHLGDASWTPENA--AETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKV 303
            +LL      Y +G  +    +A   +T +W+ L AH   I+  HLRD++ D ER  A++AEYEG  LDYSR   +  TM+ LF LA+   LKEK+
Sbjct:  461 SLLLPSLSAYEIGQVAVMASSALICDTEQWKGLQAHVGAIQKTHLRDLMDDAERCKAMTAEYEGIFLDYSRQRATGETMEKLFKLAEAAKLKEKI 555
[Close]
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Match: M8AEA8_TRIUA (Glucose-6-phosphate isomerase, cytosolic n=3 Tax=Eukaryota TaxID=2759 RepID=M8AEA8_TRIUA)

HSP 1 Score: 67.4 bits (163), Expect = 3.540e-12
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   76 TPENAAETAEWRRLDAHQKRIKDMHLRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEKV 303
            +P   ++T +W+ L AH   I   HLRD++ DT+R  A++AE+EG  LDYSR   +  T+  LF LA+   LKEK+
Sbjct:    3 SPVLISDTDQWKALQAHVGAIHKTHLRDLMTDTDRCKAMTAEFEGVFLDYSRQQATTETIDKLFKLAEAAKLKEKI 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85775.16161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU67_ECTSI2.990e-4574.76Glucose-6-phosphate isomerase, cytosolic n=1 Tax=E... [more]
A0A836C893_9STRA5.970e-2255.91Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A836CFZ0_9STRA3.280e-2052.69Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A7J7IM63_9RHOD9.710e-1652.11Glucose-6-phosphate isomerase n=1 Tax=Cyanidiococc... [more]
M1V5Y9_CYAM12.660e-1350.70Glucose-6-phosphate isomerase n=2 Tax=Cyanidioschy... [more]
A0A7S1XLF0_9STRA4.990e-1349.32Glucose-6-phosphate isomerase n=1 Tax=Phaeomonas p... [more]
A0A7R9Y962_9STRA6.740e-1349.32Glucose-6-phosphate isomerase n=1 Tax=Pinguiococcu... [more]
A0A1V9ZYZ2_9STRA1.670e-1247.95Glucose-6-phosphate isomerase n=1 Tax=Thraustothec... [more]
A0A0E0E036_9ORYZ2.390e-1241.05Glucose-6-phosphate isomerase n=1 Tax=Oryza meridi... [more]
M8AEA8_TRIUA3.540e-1243.42Glucose-6-phosphate isomerase, cytosolic n=3 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85775contigH-elongata_contig85775:229..2216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue3.9e-37
Seed eggNOG ortholog2880.D7FU67
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
EggNOG free text desc.glucose-6-phosphate isomerase activity
EggNOG OGsCOG0166@1,KOG2446@2759
EC5.3.1.9
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlucose-6-phosphate isomerase, cytosolic
Ec32 orthologEc-13_003530.1
Exons4
Model size315
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85775.16161.1prot_H-elongata_contig85775.16161.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85775 229..2216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931260.9558926-CDS-H-elongata_contig85775:228..3481622931260.9558926-CDS-H-elongata_contig85775:228..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 229..348 +
1691679763.9980586-CDS-H-elongata_contig85775:228..3481691679763.9980586-CDS-H-elongata_contig85775:228..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 229..348 +
1622931260.9705257-CDS-H-elongata_contig85775:767..8151622931260.9705257-CDS-H-elongata_contig85775:767..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 768..815 +
1691679764.0145345-CDS-H-elongata_contig85775:767..8151691679764.0145345-CDS-H-elongata_contig85775:767..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 768..815 +
1622931261.4871943-CDS-H-elongata_contig85775:1645..17141622931261.4871943-CDS-H-elongata_contig85775:1645..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 1646..1714 +
1691679764.0239007-CDS-H-elongata_contig85775:1645..17141691679764.0239007-CDS-H-elongata_contig85775:1645..1714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 1646..1714 +
1622931261.5005064-CDS-H-elongata_contig85775:2138..22161622931261.5005064-CDS-H-elongata_contig85775:2138..2216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 2139..2216 +
1691679764.0320296-CDS-H-elongata_contig85775:2138..22161691679764.0320296-CDS-H-elongata_contig85775:2138..2216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85775 2139..2216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85775.16161.1

>prot_H-elongata_contig85775.16161.1 ID=prot_H-elongata_contig85775.16161.1|Name=mRNA_H-elongata_contig85775.16161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
GQEDQAEETLLRLIRDPYHLGDASWTPENAAETAEWRRLDAHQKRIKDMH
LRDVIQDTERSLALSAEYEGTILDYSRMNVSQLTMKLLFDLAKRQGLKEK
VSSS*
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mRNA from alignment at H-elongata_contig85775:229..2216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85775.16161.1 ID=mRNA_H-elongata_contig85775.16161.1|Name=mRNA_H-elongata_contig85775.16161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1988bp|location=Sequence derived from alignment at H-elongata_contig85775:229..2216+ (Himanthalia elongata Himel1 dioecious)
GGCCAAGAGGACCAAGCGGAGGAGACACTGTTGCGACTGATTCGAGACCC
CTACCATCTGGGCGACGCCTCCTGGACTCCTGAGAATGCCGCTGAAACCG
CAGAATGGCGCCGACTTGATGTGCGATATCATGCGATTTACCCCAAGCTG
CAAGCGATGCTCCTGGTTTCTTTTCTTCAAGCCGCAACTTTATTACCAAG
GGATATCCTTTTTTCTTTCTCTCTTCTAGTCTTTTTTTGCATTCTTTTTT
CGCTCTTTTCTTTTTCTCTTCCTTTTTTCTTCCTGTTTTTTCTTTTCTAT
TATTTTTCTTTCATTATTTATTTTAGAAGAATAATGCTGGGCAAATGCTG
CCTTACTGATGATATCGATTCTCACCGGGGTTAAAAACCCCCAATAAATT
CGATGATCCCAACATTTTTTTATTTTATTTCTCTGTTTTATTGGAATTGT
CTCTTCTTGTTTTTTAATATTATTTTGCTTTTCGTTTTTCGCATTTTTGT
TTGTTCATGGCTGTGTTATTTTGATGTGTCTAATTCTAGGCTCATCAAAA
GCGTATCAAGGATATGCATCTCCGGGACGTCATACAGGTGGGTAACAATC
TCTCAGTAGAACCAGAGTTAGTAACACTTTTTTTCAAATGATTTCGGTGC
TTGTGCTGTTGTATTCTTTATTCAAGTTGATTTTGGCAAATTATTTCACG
TACTATTTTATACTTTGTTCAAATGATTTCGGCTCTGCGACTCAAGTGAC
GGTGAAATACTTTTTCAAGTTGATATTGACACTTAAATTATCGTGCAGTT
TTTAGACTTAGTTCGAATAATTCCGGCGCCGTCCTTCACGTTCCCTCGTG
TCCTTAGTTCGAATAATTCCGGCACTGTCAGTTTCGTAAATGTTTGTTCA
ATGATGACGTTGTCAGACACAAGATCTCGGATACTCGATTCAAATGATTC
TGGCACTGTCAATCACGTTTTCTGATACACTCATTTCAAATGATTCTGGG
GCTAATCAATCATATGATCTCGTAGTTGGTGATTTTACGACTGACCAATC
CAACGATAAGTGGGAAGGGATTACGTAAATACCGTCAATTCGGGGAGGGG
ATGTTAAAAGGTTTCCCCTTCTGGGGACAAAACGTATCCATCCCCTGTTC
TACAGAGGTCATATATCCCGTGCGAAGCGCTACGACCGAATACACGAAGC
TTAGATCTCCCGAATGGGAAGAATTTGATCCCCCTCTCCCAAAACCGGGG
ACACTTGTGTCACGTCCCCTCCTCCTATCTTTGCATTGGTCTGACACATT
TTTACAAAAAGCGCTATATAGATGCTGGCAATGTTACAACGATATATCTG
ACGCCAGCATGTCGGAACCACAGAATATTTCCAGAATTCGCTCGCCTCGA
CGACGACCCCTCTGCAGGACACAGAGCGATCTCTGGCGCTTTCGGCGGAG
TACGAGGGCACGATATTGGACTACTCGAGGATGAACGTGAGACGATAGGA
AGGCGGCGTGTGTTTTTCACACGGGGGTTGCTTCGGGACGTTTTGTGATC
AGTCTGAAAGACAGAGCGAGTGCTATAATCTCTTGTGATATCTTTTAGCA
CTGGTTGTAATTACTGATGATTGATTGGTCAAAATCACACATAATAAACT
GATGTCAAAATCCAGCCCGTAGAAAAAATACACCATTCGGAAAGGAGAAA
AACTTTCAAGGTACTCTCCAATACAAAAGGAAACGGAAATTCTACATACT
ACTAATACAGTACTGTACTCGGAAAAGGCGAGATCTCTAAAGAAAACGAA
ACACGAAAAAGATAACACGATAACACGATAAGACACACATTGATAAAAAA
AAAGTATGAAAGTATGTACAGGTACCCTTCTCGTCTTGCGCGGGCCTGCT
CGCTCGCCAGGTGTCGCAGTTGACGATGAAGCTCCTGTTCGACCTGGCCA
AGCGACAGGGGCTGAAGGAAAAGGTCAGCTCCTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig85775:229..2216+

>mRNA_H-elongata_contig85775.16161.1 ID=mRNA_H-elongata_contig85775.16161.1|Name=mRNA_H-elongata_contig85775.16161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig85775:229..2216+ (Himanthalia elongata Himel1 dioecious)
GGCCAAGAGGACCAAGCGGAGGAGACACTGTTGCGACTGATTCGAGACCC
CTACCATCTGGGCGACGCCTCCTGGACTCCTGAGAATGCCGCTGAAACCG
CAGAATGGCGCCGACTTGATGGCCAAGAGGACCAAGCGGAGGAGACACTG
TTGCGACTGATTCGAGACCCCTACCATCTGGGCGACGCCTCCTGGACTCC
TGAGAATGCCGCTGAAACCGCAGAATGGCGCCGACTTGATGCTCATCAAA
AGCGTATCAAGGATATGCATCTCCGGGACGTCATACAGGCTCATCAAAAG
CGTATCAAGGATATGCATCTCCGGGACGTCATACAGGACACAGAGCGATC
TCTGGCGCTTTCGGCGGAGTACGAGGGCACGATATTGGACTACTCGAGGA
TGAACGACACAGAGCGATCTCTGGCGCTTTCGGCGGAGTACGAGGGCACG
ATATTGGACTACTCGAGGATGAACGTGTCGCAGTTGACGATGAAGCTCCT
GTTCGACCTGGCCAAGCGACAGGGGCTGAAGGAAAAGGTCAGCTCCTCTT
GAGTGTCGCAGTTGACGATGAAGCTCCTGTTCGACCTGGCCAAGCGACAG
GGGCTGAAGGAAAAGGTCAGCTCCTCTTGA
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