mRNA_H-elongata_contig8573.16158.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 226 bits (577), Expect = 4.310e-65 Identity = 138/391 (35.29%), Postives = 223/391 (57.03%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
E++S++ N +K V +P + +G + ++ + G+V +YK RLVA+G+ + G+ Y E YS S+ LA A+ E+ D D AFL +++EE+Y+E+PE +E VV L +++YGL QA + WN + + GF+ A AD CV+ + +GE E +V +++DD+L +++K I + +KF++K LG AR+ +G I + + R L I + Y E +++ F + K P GV KADEP+ E+K +M++ PY VG+LM A TRP+I+ +V ++RF +NPG+ + A +K+++YLL TK+ GI Y G G EAY+D+D+ + D RRSVSG +LML + W S Q+
Sbjct: 88 ELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK 475
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3V8M8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V8M8_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.180e-64 Identity = 136/391 (34.78%), Postives = 221/391 (56.52%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
E+ S++ N + V +P + +G + ++ + G+V +YK RLVA+G+ + G+ Y E YS SI LA +A+ E+ D D AFL ++EE+Y+E+PE +E +V L +++YGL QA + WN + ++GF+ A AD CV+ + +GE E +V +++DD+L +++KT I + +KF++K LG +R+ +G I + + R L I + Y E +++ F + K P GV KADEP+ E+K +M++ PY VG+LM A TRP+I+ +V ++RF +NPG+ A +K+++YLL TK+ GI Y G +EAY+D D+ + D RRSVSG +LML + W S Q+
Sbjct: 30 ELESLIANKTWMLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSILAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDAIVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK 417
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 219 bits (559), Expect = 4.850e-63 Identity = 138/387 (35.66%), Postives = 209/387 (54.01%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQ--EFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVKKGSKIPARSGVPPFLKADE------PRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQ 1137
EM+SM DN V+ V PK +G K ++K G + +YK RLVA+GF + EG+ Y E +S + S + +A A D EL D AFL +IDE +Y+ PE ++ + +V RL ++IYGL QA + W KF +T+ GFK+ D C++ K G +++V+++DDIL + + + L KF +K LG+A + +G I + L + + Y++ ++ F + + G P K D+ P+N EK++M FPY AVG+LM TRP+IA V + R+ NPG + K ++M+YL TK++ +TY + L I AY+DSDF LD+RRS SG + MLA G +SW S Q
Sbjct: 29 EMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAP-----GDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQ 408
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 221 bits (563), Expect = 1.580e-62 Identity = 135/391 (34.53%), Postives = 223/391 (57.03%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
E++S++ N +K V +P + +G + ++ + G+V +YK RLVA+G+ + G+ Y E YS SI LA +A+ E+ D D AFL ++EE+Y+E+ E +E VV L +++YGL QA + WN + ++GF+ A D CV+ + +GE E +V +++DD+L +++K I + +KF++K +G AR+ +G I + + R L I + Y E +++ F + K P GV KADEP+ E+K +M++ PY VG+LM + TRP+I+ +V ++RF +NPG+ + A +K+++YLL TK+ GI Y G G +EAY+D+D+ + D RRSVSG +LML + W S Q+
Sbjct: 153 ELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQK 540
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR) HSP 1 Score: 223 bits (569), Expect = 3.740e-62 Identity = 140/387 (36.18%), Postives = 210/387 (54.26%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPG--VVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVKKGSKIPARSGVPPFLKADE------PRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQ 1137
EM SMV N V+ V P +G K ++K G +E+YK RLVA+GF + EG+ YTE +S S + +A A + EL D AFL ++EE+Y++ PE + G +V +LN++IYGL QA + W KF + +T+ GF++ D C+++KV G +V+++DDIL K + L + F +K +G+A Y +G I + L + + Y+ ++E F++K S V P +K D P+N E+E M+N PY AVG+LM TRP+IA +V + R+ NPG + KA K+M+YL TKN+ + Y L + Y+DSD+ +DTR+S SG V MLA G +SW S Q
Sbjct: 455 EMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSP-----SVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTD-NLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQ 834
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 223 bits (569), Expect = 6.460e-62 Identity = 136/391 (34.78%), Postives = 223/391 (57.03%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
E+ S++ N +K V +P + +G + ++ + G+V +YK RLVA+G+ + G+ Y E YS SI L +A+ E+ D D AFL ++ E+Y+E+PEE +E VV L +++YGL QA + WN ++ ++GF+ A AD CV+ + +GE E +V +++DD+L +++ I + +KF++K +G AR+ +G I + + R L I + Y E +++ F + K P GV KADEP+ E+K +M+ PY VG+LM A TRP+I+ +V ++RF +NPG+ + A +K+++YLL TK+ GI Y G G +EAY+D+D+ + D RRSVSG +LML + + W S Q+
Sbjct: 419 ELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQK 806
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA) HSP 1 Score: 214 bits (545), Expect = 9.430e-62 Identity = 137/393 (34.86%), Postives = 220/393 (55.98%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLY--KRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
E+ S+ N +K V RP + +G + ++ KRN + G ++K RLVA+G+ + G+ Y E Y+ SI LA A+ E+ D D AFL +DEE+Y+E+PE +E VV L +++YGL QA + WN + +GFK A AD CV+ + +G+ E +V +++DD+L ++ K I + +KF++K LG AR+ +G I + + L I + Y E +++ F + K S +P + +K D P+ E+K +M++ PY +G+LM A TRP+IA V ++RF +NPG+A+ A +K+++YLL TK+ GITY G G + AY+D+D+ + D RRSVSG +LM+ + W S Q+
Sbjct: 30 ELESLTANKTWKLVPRPTHQRPIGCRWVFALKRNDKEKG---EHKARLVAKGYSQRHGIDYEETYAPVAYLNSIRAVLAKCCAEGFEIEQCDVDTAFLYGKLDEEIYMELPEGLRELLTLADAEGEEDVVCLLLQSLYGLKQASRVWNETIDGHLKGMGFKAADADPCVYTRG-EGDDECIVCLYVDDMLIASRDKDVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMDGKTLGISQRAYTESIIKKFGQENAKPSLMPLDPSLH-LIKDDGPQTKEDKAKMKSRPYRSLIGSLMYLACETRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGL-LGTKLTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQK 416
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3RIG2_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=35 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RIG2_9STRA) HSP 1 Score: 222 bits (566), Expect = 6.710e-61 Identity = 136/391 (34.78%), Postives = 221/391 (56.52%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
E+ S++ N + V +P + +G + ++ + G+V +YK RLVA+G+ + G+ Y E YS SI LA +A+ E+ D D AFL ++EE+Y+E+PE +E +V L +++YGL QA + WN + ++GF+ A AD CV+ + +GE E +V +++DD+L +++KT I + +KF++K LG +R+ +G I + + R L I + Y E +++ F + K P GV KADEP+ E+K +M++ PY VG+LM A TRP+I+ +V ++RF +NPG+ A +K+++YLL TK+ GI Y G +EAY+D D+ + D RRSVSG +LML + W S Q+
Sbjct: 824 ELESLIANKTWMLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSILAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDAIVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK 1211
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI) HSP 1 Score: 213 bits (543), Expect = 7.440e-61 Identity = 133/387 (34.37%), Postives = 216/387 (55.81%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPG--VVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVKKGSKIPARSGVPPFLKADE------PRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQ 1137
E++SM N V+ + P + VG K ++K G +E++K RLVA+GF + EG+ Y + +S S+ + +A A D EL D AFL ++DE++Y+E PE + + +V +L K+IYGL QA + W KF + +T+ GFK+ D C++ KV G + +++++DDIL + + L + F + +G+A Y + I + L + + Y++ ++E F+++ S SG+ P LK D+ PRN E+E+M+ PY AVG+LM + TRP+I+ +V + R+ +PG + KA K+M+YL TK++ +TY + L + Y+DSD+G LD+ +S SG V MLA G ISW S Q
Sbjct: 16 ELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENILDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCS-----SGIAPILKGDKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQ 395
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 220 bits (560), Expect = 9.650e-61 Identity = 135/391 (34.53%), Postives = 223/391 (57.03%), Query Frame = 1
Query: 1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
E++S++ N +K V +P + +G + ++ + G+V +YK RLVA+G+ + G++Y E YS SI LA +A+ E+ D D AFL ++EE+Y+E+ E +E VV L +++YGL QA + WN + ++GF+ A D CV+ + +GE E +V +++DD+L +++K I + +KF++K +G AR+ +G I N + R L I + Y E +++ + K P GV KADEP+ E+K +M++ PY VG+LM + TRP+I+ +V ++RF +NPG+ + A +K+++YLL TK+ GI Y G G +EAY+D+D+ + D RRSVSG +LML + W S Q+
Sbjct: 397 ELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQK 784 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8573.16158.1 >prot_H-elongata_contig8573.16158.1 ID=prot_H-elongata_contig8573.16158.1|Name=mRNA_H-elongata_contig8573.16158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp MRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig8573:7128..8267+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8573.16158.1 ID=mRNA_H-elongata_contig8573.16158.1|Name=mRNA_H-elongata_contig8573.16158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-elongata_contig8573:7128..8267+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8573:7128..8267+ >mRNA_H-elongata_contig8573.16158.1 ID=mRNA_H-elongata_contig8573.16158.1|Name=mRNA_H-elongata_contig8573.16158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig8573:7128..8267+ (Himanthalia elongata Himel1 dioecious)back to top |