mRNA_H-elongata_contig85716.16155.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85716.16155.1
Unique NamemRNA_H-elongata_contig85716.16155.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: D7FM38_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM38_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.940e-33
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRGVVPTRLVTIFLGANDCVLPGFPQH 195
            GWL  LAH+WERRFDVVNRGFSGYNTRWL+PLMDRLFVP G  P +LVTIFLGANDCVLPG  Q+
Sbjct:   69 GWLSLLAHWWERRFDVVNRGFSGYNTRWLMPLMDRLFVPGGNTPVKLVTIFLGANDCVLPGNAQY 133          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: A0A166H1R3_9AGAM (SGNH hydrolase n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166H1R3_9AGAM)

HSP 1 Score: 80.9 bits (198), Expect = 4.940e-17
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLF-VPRGVVPT---RLVTIFLGANDCVLPGFPQH 195
            G+  +LAH + RRFDV+NRGFSGYNT W LP+ D LF  P   VPT   RL+TI+ GAND  L   PQH
Sbjct:   24 GFGAQLAHAYARRFDVLNRGFSGYNTEWALPIADTLFPAPGSSVPTAPVRLLTIWFGANDACLKPSPQH 92          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: A0A2P6TXQ9_CHLSO (GDSL esterase lipase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXQ9_CHLSO)

HSP 1 Score: 80.5 bits (197), Expect = 1.120e-16
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRGVVPT-RLVTIFLGANDCVLP 180
            GW G+LA  ++RR DV+NRG++GYNTRW L L+DR+F      P  RLVTIF GAND  LP
Sbjct:   35 GWTGQLADAYQRRVDVLNRGYNGYNTRWALQLLDRVFPNNTAAPPPRLVTIFFGANDAALP 95          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: A0A8J9RC68_9CHLO (Isoamyl acetate-hydrolyzing esterase 1 homolog n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RC68_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 7.250e-16
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRGVVPTRLVTIFLGANDCVLP 180
            GW GRLA  ++R+ DV+NRG+SGYNTRW+  +M  +F     +P  LVTIF GAND  LP
Sbjct:   22 GWGGRLASEYQRKVDVINRGYSGYNTRWVKHIMPMVFPVSQKIPPELVTIFFGANDAALP 81          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: E1Z978_CHLVA (SGNH_hydro domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z978_CHLVA)

HSP 1 Score: 77.0 bits (188), Expect = 8.780e-16
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVP--RGVVPTRLVTIFLGANDCVLP 180
            GW G LA  ++RR DV+NRG+SGYN+RW L L+DR+F        P RL T+F GAND  LP
Sbjct:   20 GWTGLLADAYQRRADVINRGYSGYNSRWALQLLDRVFPEPTAAAPPPRLATVFFGANDAALP 81          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: W4KHV3_HETIT (Isoamyl-acetate hydrolyzing esterase-like protein n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4KHV3_HETIT)

HSP 1 Score: 77.0 bits (188), Expect = 1.690e-15
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   13 RLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRG----VVPTRLVTIFLGANDCVLPGFPQH 195
            RLAH + R+FDV+NRGFSGYNT W LP+ +++F  +     V   RL+TI+ GAND  +PG  QH
Sbjct:   29 RLAHVYARKFDVLNRGFSGYNTEWALPVFEQIFAKQHEQQHVPLVRLLTIWFGANDACIPGTAQH 93          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: A0A5E3WKQ3_9AGAM (SGNH_hydro domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WKQ3_9AGAM)

HSP 1 Score: 76.6 bits (187), Expect = 2.110e-15
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRG---VVPTRLVTIFLGANDCVLPGFPQH 195
            G+  RLAH + RR DV+NRGFSGYNT W LP+ D +F         P RL TI+ GAND  L   PQH
Sbjct:   24 GFGARLAHAYARRSDVLNRGFSGYNTEWALPIADTIFPTSSSAVTAPVRLATIWFGANDACLKPSPQH 91          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: UPI000440A541 (SGNH hydrolase n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440A541)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-15
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   13 RLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVP----RGVVPTRLVTIFLGANDCVLPGFPQH 195
            RLAH + R+FDV+NRG+SGY T W LP+ +++F      + V P RL+TI+ GAND  L   PQH
Sbjct:   29 RLAHVYARKFDVLNRGYSGYTTEWALPVFEKIFAKQHEQKHVAPVRLLTIWFGANDACLKQSPQH 93          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: A0A7R9YZ71_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YZ71_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 4.580e-15
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRGVVPTRLVTIFLGANDCVLP 180
            GW   LAH + R+ DVVNRGFSGYNT+W LP+M+++F       T LV +F GAND  LP
Sbjct:   62 GWGAELAHNYTRKADVVNRGFSGYNTKWALPMMEQVFAGCNDSNTLLVVLFFGANDACLP 121          
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Match: A0A059LFR1_9CHLO (SGNH_hydro domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LFR1_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 6.120e-15
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRGVVPTRLVTIFLGANDCVLP 180
            GW   +A  +ERR D++NRGF GYNTRW L L+   +V  GVV  +L TIF GAND  LP
Sbjct:   25 GWGMHIASQYERRIDLINRGFGGYNTRWALELLP--WVMEGVVKPQLATIFFGANDAALP 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85716.16155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM38_ECTSI7.940e-3381.54SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A166H1R3_9AGAM4.940e-1757.97SGNH hydrolase n=1 Tax=Peniophora sp. CONT TaxID=1... [more]
A0A2P6TXQ9_CHLSO1.120e-1659.02GDSL esterase lipase n=1 Tax=Chlorella sorokiniana... [more]
A0A8J9RC68_9CHLO7.250e-1655.00Isoamyl acetate-hydrolyzing esterase 1 homolog n=1... [more]
E1Z978_CHLVA8.780e-1654.84SGNH_hydro domain-containing protein n=1 Tax=Chlor... [more]
W4KHV3_HETIT1.690e-1552.31Isoamyl-acetate hydrolyzing esterase-like protein ... [more]
A0A5E3WKQ3_9AGAM2.110e-1552.94SGNH_hydro domain-containing protein n=1 Tax=Penio... [more]
UPI000440A5412.300e-1550.77SGNH hydrolase n=1 Tax=Stereum hirsutum (strain FP... [more]
A0A7R9YZ71_9CHLO4.580e-1555.00Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A059LFR1_9CHLO6.120e-1555.00SGNH_hydro domain-containing protein n=1 Tax=Helic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85716contigH-elongata_contig85716:2495..2689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue5.6e-26
Seed eggNOG ortholog2880.D7FM38
EggNOG free text desc.lipid catabolic process
EggNOG OGsCOG0214@1,KOG3035@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931260.5680058-CDS-H-elongata_contig85716:2494..26891622931260.5680058-CDS-H-elongata_contig85716:2494..2689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85716 2495..2689 +
1691679763.8185637-CDS-H-elongata_contig85716:2494..26891691679763.8185637-CDS-H-elongata_contig85716:2494..2689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85716 2495..2689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85716.16155.1prot_H-elongata_contig85716.16155.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85716 2495..2689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85716.16155.1

>prot_H-elongata_contig85716.16155.1 ID=prot_H-elongata_contig85716.16155.1|Name=mRNA_H-elongata_contig85716.16155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
GWLGRLAHYWERRFDVVNRGFSGYNTRWLLPLMDRLFVPRGVVPTRLVTI
FLGANDCVLPGFPQH
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mRNA from alignment at H-elongata_contig85716:2495..2689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85716.16155.1 ID=mRNA_H-elongata_contig85716.16155.1|Name=mRNA_H-elongata_contig85716.16155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig85716:2495..2689+ (Himanthalia elongata Himel1 dioecious)
GGTTGGCTAGGCAGGCTGGCACACTATTGGGAGCGCCGGTTCGACGTTGT AAACCGCGGCTTCAGTGGCTACAACACACGCTGGCTGTTACCGCTGATGG ACAGGCTCTTCGTGCCCCGCGGGGTGGTGCCCACGAGGCTTGTTACCATA TTCCTCGGTGCTAACGATTGCGTTCTTCCCGGCTTTCCCCAGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig85716:2495..2689+

>mRNA_H-elongata_contig85716.16155.1 ID=mRNA_H-elongata_contig85716.16155.1|Name=mRNA_H-elongata_contig85716.16155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig85716:2495..2689+ (Himanthalia elongata Himel1 dioecious)
GGTTGGCTAGGCAGGCTGGCACACTATTGGGAGCGCCGGTTCGACGTTGT
AAACCGCGGCTTCAGTGGCTACAACACACGCTGGCTGTTACCGCTGATGG
ACAGGCTCTTCGTGCCCCGCGGGGTGGTGCCCACGAGGCTTGTTACCATA
TTCCTCGGTGCTAACGATTGCGTTCTTCCCGGCTTTCCCCAGCACGGTTG
GCTAGGCAGGCTGGCACACTATTGGGAGCGCCGGTTCGACGTTGTAAACC
GCGGCTTCAGTGGCTACAACACACGCTGGCTGTTACCGCTGATGGACAGG
CTCTTCGTGCCCCGCGGGGTGGTGCCCACGAGGCTTGTTACCATATTCCT
CGGTGCTAACGATTGCGTTCTTCCCGGCTTTCCCCAGCAC
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