mRNA_H-elongata_contig8557.16145.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8557.16145.1 vs. uniprot
Match: D7FQY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY1_ECTSI) HSP 1 Score: 717 bits (1850), Expect = 4.030e-249 Identity = 382/687 (55.60%), Postives = 492/687 (71.62%), Query Frame = 1
Query: 1 QVMFEEKYGSATMVTEKWFREVCAA-KQTLPEVVVLTAASAKIVAGAFVRAGISNVIAVETSEANTVALDFIRVFYTKLAQGQTVQTSFDEALRSIPHHDQKRCLLLPDNEDHGVSPFDDASSTGFINHIQRLPRVLEVTPH-----FRGREIQVQEVYMYMVQPIRVITIRGKPGIGKTQVALRACKYAWERRLFGETFFIPLKDHATGTPITCFTELAARIAHAFGFSEEEICEHREGFLGCIQNKCNSSTKDVLLVLDGCPPYFVNKKMERITLSSVVERLGDRGASKLKFVITVVTQVGIAREKVVNIDRLSDLDAAELFVASASRELTVEELRGGMVVGGPQVRSSECMRLFAGSAIMTALGGHPGAIVSASQRLRERHLLRYEDEYLKEIETNHWRYKCLEQEFAKKLEECTHTQSGFVIDGEWGGRQARLSPTPLNAALT------------ATGIATLKGAPLQLPTSLPA-RINLSDGEFWWNRAVERHSGKAGASAQTVPWKALCNHSLSQYFLDILGAEGRNRPLVEDEFQALANNAQLWHPHSHPGSVPGMVASRQGFLGSFWPWFKAATRSLKFTEYWGSQMYPVICGLSTTSVDGNKLLQGKPPGTFLLRLSSTELGALVVMFVKEHQKIGSILMKATSNP---GKFKMEYGNDGFMVATLRKLIMFIDCWTH 1995
+V+FE+ G A VTE W + C K LPE+VVLTAASAK+VAG F+RAGISNV+AV+TS + V L F+R FY LAQG T++ SFD ++S+P + RC+LLP N +H +SPFDDA S F + P ++++ FRGREI VQEVYM+MVQ +VITI G+PGIGKT+VALRAC+YA ER LF ETFF+ L+D TGTPIT E+AARIA+AFG S++EI +H EGFLGCIQ+KC D+LLVLDGC PYFVN++ E+I LSSVVE+L R S L++++TVVTQVGIA+EKVVNI RL +L AAELFVASA R++TVEELRGGMVV GP V+ +ECMRLFAG IM+AL HPGAIV++S L + HLL ED+YL++I RY+ LEQEFA++L+EC TQS VI+ EWG + P+ +++L I + A P +L + ++GEFWW A+E+H+G+ GA +QT+PW+ALC HSL+ YF+++LG EGR+RPL+ D+F AL NN LW P+ PGSV G +ASRQ FLG+FWPWFKAAT LK T WG Q YPVICGLSTT DG KLLQG+P GTFLLRLSS GAL M+VK Q++G++L+K++++P KF++EYG++ M+A L++LI I WTH
Sbjct: 99 KVIFEKPNGLAAPVTEDWLQNTCGGQKDKLPELVVLTAASAKLVAGVFIRAGISNVVAVDTSGDDAVTLSFVRSFYLSLAQGFTLRDSFDAGVQSLPDGQEDRCVLLPANGEHWLSPFDDAESGTFTYRVPHSPSKMKMSKKKKISSFRGREIPVQEVYMHMVQHSKVITISGRPGIGKTEVALRACEYARERCLFIETFFVSLQDKTTGTPITTLKEVAARIANAFGISKQEIQDHTEGFLGCIQHKCGLQKGDLLLVLDGCSPYFVNERDEKIKLSSVVEQLCPR-VSNLQYIVTVVTQVGIAKEKVVNIGRLGELAAAELFVASAPRKVTVEELRGGMVVSGPHVQLAECMRLFAGGVIMSALRRHPGAIVASSGMLEQWHLLTNEDDYLQDIAVQLQRYEKLEQEFARRLQECPQTQSDSVIEREWGRQSRPERPSRQSSSLVKDRCPPHHDPRRVPSIPRKQDASKSPPPALATTELRTTNGEFWWRLALEKHTGEVGAISQTIPWEALCRHSLASYFVEVLGDEGRDRPLLNDDFNALGNNPALWDPYRAPGSVQGGIASRQEFLGTFWPWFKAATLLLKRTGCWGFQKYPVICGLSTTRFDGMKLLQGRPAGTFLLRLSSKP-GALAAMYVKPMQELGNVLIKSSADPVNHRKFEIEYGSET-MIAPLKQLIEIIPKWTH 782
BLAST of mRNA_H-elongata_contig8557.16145.1 vs. uniprot
Match: A0A836CE12_9STRA (CHAT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE12_9STRA) HSP 1 Score: 137 bits (345), Expect = 6.770e-30 Identity = 172/663 (25.94%), Postives = 261/663 (39.37%), Query Frame = 1
Query: 82 TLPEVVVLTAASAKIVAGAFVRAGISNVIAV--ETSEANTVALDFIRVFYTKLAQGQTVQTSFDEA-----LRSIPHHDQKRCLLLPDNEDHGVSPFDDASSTGFINHIQRLPR---VLEVTPHFRGREIQVQE-VYMYMVQPIRVITIRGKPGIGKTQVALRACKYAW-------------------------ERRLFGETFFIPLKDHATGTP--ITCFTELAARIAHAFGFS--------EEEICEHREGFLGCIQNKCNSSTKDVLLVLDGCPPYFVNKKMERITLSSVVERLGDRGA-SKLKFVITVVTQVGIAREKVVNIDRLSDLDAAELFVASASRELTVEELRGGMVVGGPQVRSSECMRLFAGSAIMTALGGHPGAIVSASQRLRERHLLRYEDEYLKEIETNHWRYKCLEQEFAK--------KLE-ECTHTQSGFVIDGEWGGRQARLSPTPLNAALTATGIATLKGAPLQLPTSLPARINLSDGEF--WWNRAVERHSGKAGASAQTVPWKALCNHSLSQYFLDILGAEGRNRPLVEDEFQALANNAQLWHPHSHPGSVPGMVASRQGFLGSFWPWFKAATRSLKFTEYW------GSQMYPV------ICGLSTTSVDGNKLLQGKPPGTFLLRLSSTELGALVVMFVK 1860
++P +V ++A ++ VA F+ AG+ +V+AV + + + A+ F+ FY L G +V+ +F++A L + H + + LLP++ H P S G R P ++ +F GREI VQ V Q R + + G G+GKTQ + + T P + A IA A F EE + E LG S + VLLVLDGC P+ V + TL + V+RL + A +L V T + VG E+V+N++ L D+ AAE+F +A R + EL G G V ++ +F+ I++ L G+PGAIV+ +Q L ER+LLR + + R + + ++ A KLE + H A + L G + A +G W W LC + YF LG +RP ++ L + ++W P + P P V F SFWPW AA R L+ + W GS V I GLS D ++L G PGTFL R+S++ L LV+ +K
Sbjct: 227 SIPRLVFISACYSETVASGFLSAGVPHVVAVCKDHTVKDREAVSFMNAFYEMLLSGDSVRQAFNKARDVLGLAAESHQEAAKFRLLPEDAAHDERPMRGVS-IGPYTDATRPPAPSTMVAAAGYFSGREINVQALVDAVQRQVARAVCVAGPSGVGKTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIAVXXXXXXXXXXXXVTAAPPDLPPSDPGPAAIAAALNFPLPPPPFNVEEALVEGVVLKLGAELGPGTGSGRPVLLVLDGCSPWLVRGAL---TLRAFVDRLLEVAALRRLCVVTTCIRPVGAQGERVINLEPLDDVRAAEVFCKAAPRAYSPAELMDGH---GTMV--ADLNLVFSRGQIVSLLKGNPGAIVAVTQSLHERNLLR---------DASFIRARLIPEKLATLAARDAKFKLELDDAHPXXXXXXXXXXXXXXXXXXXXXXXXA----DVRKLHGQQVWASVRRRASAVAVNGAVVNGWQNGSPSXXXXXXXXXWAPTWGQLCELGIVDYFRLRLGT---SRPPTPEDLAFLGKSGKIWDPFAAP-RAPHAVVQHAAFFESFWPWLWAAVRLLRASGLWCPSEGVGSPGRDVPALPRFILGLSDGLAD--RVLYGSVPGTFLFRISTSMLSTLVICHIK 861
BLAST of mRNA_H-elongata_contig8557.16145.1 vs. uniprot
Match: W7U5S9_9STRA (Sh2 domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA) HSP 1 Score: 115 bits (289), Expect = 4.720e-23 Identity = 116/395 (29.37%), Postives = 188/395 (47.59%), Query Frame = 1
Query: 13 EEKYGSATMVTEKWFREVCAAKQTLPEVVVLTAASAKIVAGAFVRAGISNVIAV--ETSEANTVALDFIRVFYTKLAQGQTVQTSFDEALRSIPHH-----DQKRCLLLPDNEDHGVSPFDDASSTGFINHIQR-LPRVLEVTP-HFRGREIQVQEVY--MYMV-QPIRVITIRGKPGIGKTQVALRACKYAWERRLFGETFFIPL--KDHATGTPITCFTELAARIAHAFGFSEEEICEHREGFLGCIQNKCNSSTKDVLLVLDGCPPYFVNKKMERI-TLSSVVERLGDRGASKLKFVITVVTQVGIAR-----EKVVNIDRLSDLDAAELFVASASRELTVEELRGGMVVGGPQVRSSECMRLFAGSAIMTALGGHPGAIVSASQRLRERHL 1137
E+ G +++ + E+ AA ++V ++A ++IV AF+ AG+ +V+A+ + ++ A F FY +A G+TV+ +F+ A + + ++ LLLP + +H ++ FDDA F++ +P + P F GR + QEV + MV Q R IT+RG+PG+GKT +A + C+Y ER F + +PL K++ + T + A I +E EI FL +Q+K S V++VLDG P F N+ + LS ++ R+ G L V G R EKVV++ LSD+ A + A +EE+ + P E A S ++ L GHP AIV + L + L
Sbjct: 149 EKPVGETNVLSIETLTELFAAGGVRTQLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFYLSIAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESPPPVPNTCDPPPVPFVGRNVAAQEVIGLLSMVSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMVPLRRKEYRSYEKETLCKVIGAAIGFEDASNEREIV-----FL--LQDKHPSGR--VIMVLDG-PDRFFNRSNSLVQVLSYLLSRI--HGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPPGFDLEEM-----MSRPYATREEAYAELAASPVIRELRGHPKAIVMFAPLLEDHRL 526
BLAST of mRNA_H-elongata_contig8557.16145.1 vs. uniprot
Match: K8YZD6_NANGC (Sh2 domain containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZD6_NANGC) HSP 1 Score: 111 bits (277), Expect = 1.310e-22 Identity = 111/369 (30.08%), Postives = 177/369 (47.97%), Query Frame = 1
Query: 91 EVVVLTAASAKIVAGAFVRAGISNVIAV--ETSEANTVALDFIRVFYTKLAQGQTVQTSFDEALRSIPHH-----DQKRCLLLPDNEDHGVSPFDDASSTGFINHIQR-LPRVLEVTP-HFRGREIQVQEVY--MYMV-QPIRVITIRGKPGIGKTQVALRACKYAWERRLFGETFFIPL--KDHATGTPITCFTELAARIAHAFGFSEEEICEHREGFLGCIQNKCNSSTKDVLLVLDGCPPYFVNKKMERI-TLSSVVERLGDRGASKLKFVITVVTQVGIAR-----EKVVNIDRLSDLDAAELFVASASRELTVEELRGGMVVGGPQVRSSECMRLFAGSAIMTALGGHPGAIVSASQRLRERHL 1137
++V ++A ++IV AF+ AG+ +V+A+ + ++ A F FY +A G+TV+ +F+ A + + ++ LLLP + +H ++ FDDA F++ +P + P F GR + QEV + MV Q R IT+RG+PG+GKT +A + C+Y ER F + +PL K++ + T + A I +E EI FL +Q+K S V++VLDG P F N+ + LS ++ R+ G L V G R EKVV++ LSD+ A + A +EE+ + P E A S ++ L GHP AIV + L + L
Sbjct: 33 QLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFYLSIAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESPPPVPNTCDPPPVPFVGRNVAAQEVIGLLSMVSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMVPLRRKEYRSYEKETLCKVIGAAIGFEDASNEREIV-----FL--LQDKHPSGR--VIMVLDG-PDRFFNRSNSLVQVLSYLLSRI--HGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPPGFDLEEM-----MSRPYATREEAYAELAASPVIRELRGHPKAIVMFAPLLEDHRL 384
BLAST of mRNA_H-elongata_contig8557.16145.1 vs. uniprot
Match: A0A8J5Y179_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y179_DIALT) HSP 1 Score: 65.1 bits (157), Expect = 4.470e-7 Identity = 105/390 (26.92%), Postives = 170/390 (43.59%), Query Frame = 1
Query: 94 VVVLTAASAKIVAGAFVRAGISNVIAVETSEANTVALD---FIRVFYTKLAQGQTVQTSFDE-----ALRSIPH---------HDQKRCLLLPDNEDHGVSPFDDASSTGFINHIQRLPRVLEVT--PHFRGREIQVQEVYMYMVQ----PIRVITIRGKPGIGKTQVALRACKYAWERRLFGETFFIPLKDHATGTPITCFTELAARIAHAFGFSEEEICEHREGFLGCIQNKCNSSTKDV---------LLVLDGCPPYFVNKKMERITLSSVVERLGDR--GASKLKFVIT----VVTQVG--IAREKVVNIDRLSDLDAAELFVASASRELTVEELRGGMVVGGPQVRSSECMRLFAGSAIMTALGGHPGAIVSASQRLRERHLLR 1143
VVVL A + AFV AG +V+A+ S+A + D F R F L QGQ+V+++F+ A + P + ++ +LLP+ H P A G + + LP + T F GR ++VQ + + + +R++T+ G+ G+GKT ++ ++ W+RR L+D A F EL+ G S EE+ G LG + KD ++VLDG V++ ++ L ++V+R+ S+L+ ++T + T +G +A E V ID+L +LDAA L A S L +R + +R A I T L G P I + +R+ LR
Sbjct: 293 VVVLGACHSLDAGRAFVAAGCKHVVAI-ASDAKVLDDDAALFARHFLFALFQGQSVRSAFERGKGVVASAANPRVSEPTNQRAFEAEKIVLLPEGAPHDERPMS-ALLRGELFEVNPLPALEPPTVPSPFVGRALEVQALVRMLRRRRQSEVRLVTLWGERGVGKTALSKAVAQFLWQRR--------HLQDGAA------FVELS-------GVSSEEMAL---GALGDALDMEFGRWKDASRALHRWHGVVVLDG-----VDELLQ--ALPAIVQRMVSAVLHGSQLQVIVTSCVPLSTAIGAEMAVEHPVRIDKLHELDAARLLHALVSDALPAH------------LRGTANLRALAQHEIFTHLDGLPRRIAQTAPHIRQGMSLR 637
BLAST of mRNA_H-elongata_contig8557.16145.1 vs. uniprot
Match: A0A0M0JJX5_9EUKA (AAA domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJX5_9EUKA) HSP 1 Score: 57.0 bits (136), Expect = 8.560e-5 Identity = 101/398 (25.38%), Postives = 154/398 (38.69%), Query Frame = 1
Query: 130 AGAFVRAGISNVIAVET--SEANTVALDFIRVFYTKLAQGQTVQTSFDEALRSI-----------PHHDQKRCLLLP----------------------------------DNEDHGVSPFDDASSTGFINHIQRLPRVLEVTPH--FRGREIQVQEVYMYMVQ----PIRVITIRGKPGIGKTQVALRACKYAWERRLFGETFFIPLKDHATGTPITCFTELAARIAHAFGFSEEEICEHREGFLGCIQNKCN---SSTKDV---------LLVLDGCPPYFVNKKMERITLSSVVERLGDRGASKLKFVITVVTQVGIAREKVVNIDRLSDLDAAELFVASASRELTVEELRGGMVVGGPQVRSSECMRLFAGSAIMTALGGHPGAIVSASQRLRE 1128
A AFV AG+ +VIAV T + A F R Y L +G TV+ +FD A + P + ++ +LLP D + HGV P + G + LP + H F GR I +Q++ + + Q +R++T+ G G+GK+ +AL A + +ERR F E R+ E + CE G LG + + SS DV LLVLD C M + ++++L +L+ + T + +A E + D L DAA LF REL +E G+ + P +S E + ++ AL G P AI + LR+
Sbjct: 68 AEAFVDAGVPHVIAVRTRLKVLDDAAALFARHLYLALVEGHTVRQAFDYATAQLSAVAPSLGLPNPSEEAQKFVLLPEWYESPKPTAGLGHSDRGFPHSDGGREGRISTEGDMDPHGV-PLFASLPYGTVVERNPLPELEPPYVHKPFLGRAIALQQLVLKLGQRRQKEVRLVTLHGPAGVGKSSLALAAASHLFERRWFPEG--------------------CVRV-------ELQGCETEGGVLGALAEALDMEFSSMTDVGRALKHWKGLLVLDECDAAGAAGVM-----APLLQKL--LSTQELRVLCTARKPLRVAGEVLFLTDPLHRRDAARLF-----RELAME----GLPL--PLRKSEEQLMQHP---VLEALQGLPRAIWQTAPLLRQ 416 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8557.16145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8557.16145.1 >prot_H-elongata_contig8557.16145.1 ID=prot_H-elongata_contig8557.16145.1|Name=mRNA_H-elongata_contig8557.16145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=663bp MFEEKYGSATMVTEKWFREVCAAKQTLPEVVVLTAASAKIVAGAFVRAGIback to top mRNA from alignment at H-elongata_contig8557:1..7515- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8557.16145.1 ID=mRNA_H-elongata_contig8557.16145.1|Name=mRNA_H-elongata_contig8557.16145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7515bp|location=Sequence derived from alignment at H-elongata_contig8557:1..7515- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8557:1..7515- >mRNA_H-elongata_contig8557.16145.1 ID=mRNA_H-elongata_contig8557.16145.1|Name=mRNA_H-elongata_contig8557.16145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3978bp|location=Sequence derived from alignment at H-elongata_contig8557:1..7515- (Himanthalia elongata Himel1 dioecious)back to top |