mRNA_H-elongata_contig85548.16140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85548.16140.1
Unique NamemRNA_H-elongata_contig85548.16140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.570e-38
Identity = 68/100 (68.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:   43 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALFQN 342
            V++ P    S VT      F     FI   +KK K ERKPSE++IER NSQGK+MKFR+IDNATRLHPKEWKACVCV+VQGAAWQFKGWEWDQPV LFQN
Sbjct:  312 VIIVPTVPTSLVTLYNATDFLQDGNFIPTMDKKSKSERKPSEIMIERVNSQGKKMKFRVIDNATRLHPKEWKACVCVLVQGAAWQFKGWEWDQPVTLFQN 411
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A835YIM7_9STRA (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.340e-18
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   37 PRVVLSPWTNLSFVTRCMIRFFCSTAAFISPTE--KKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALFQN 342
            P +++ P    + +T    + F     F+      +K   +RK S++++ER    G+   +R+IDN TRL P+EW++ VCV+V G AWQFKGW WDQPV LFQ+
Sbjct:  321 PPIIVVPNLQSAVITLANAKEFFEEGRFVPANGVIRKPSVDRKSSDVLVERALPGGRHATYRLIDNPTRLRPREWESIVCVIVAGPAWQFKGWVWDQPVVLFQH 424
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A7S3Y6H8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6H8_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 1.630e-15
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  100 FCSTAAFISPTEKKEKGERKPSELVIERTNSQGK----RMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 336
            F    +F+   EK+  G  KP+ +V+ER    G        F ++DNA RL P++W   V VVVQGAAWQFKGW++ QP+ LF
Sbjct:   10 FMQDGSFVPSQEKRRAGAAKPARVVVERARPPGAPGEGNWTFEVVDNAARLKPRDWDRVVAVVVQGAAWQFKGWKYPQPLDLF 92
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A7S3T3F7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T3F7_EMIHU)

HSP 1 Score: 74.7 bits (182), Expect = 8.370e-14
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  118 FISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 336
            +ISP E K+ G  KP+E+ +E     G R +F +I+NA +L   EW+   CV+VQGAAWQFKGW +     LF
Sbjct:  107 WISPVELKQSGAAKPAEIKLEHCFEDGSRARFLVIENANKLSEAEWRNVACVIVQGAAWQFKGWPFKSEADLF 179
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A7S3WSJ0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WSJ0_EMIHU)

HSP 1 Score: 74.7 bits (182), Expect = 3.070e-13
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  118 FISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 336
            +ISP E K+ G  KP+E+ +E     G R +F +I+NA +L   EW+   CV+VQGAAWQFKGW +     LF
Sbjct:  369 WISPVELKQSGAAKPAEIKLEHCFEDGSRARFLVIENANKLSEAEWRNVACVIVQGAAWQFKGWPFKSEADLF 441
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A0A9WF39_LYGHE (Parafibromin n=3 Tax=Mirini TaxID=236659 RepID=A0A0A9WF39_LYGHE)

HSP 1 Score: 68.9 bits (167), Expect = 3.280e-11
Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   43 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWD-QPVALF 336
            +++ P  N S +T    +       ++S  EK++ GE++ +E++++R       + +R+IDN  +L P +W   V V V G AWQFKGW +   PV +F
Sbjct:  369 IIIIPSANTSLITMYNAKEILQDLRYVSTEEKRQAGEKRANEVLLQRRKDGNTTVPYRVIDNPQKLGPSDWDRVVAVFVMGPAWQFKGWPFGGNPVEIF 467
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A485LTY1_9STRA (Aste57867_25225 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTY1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.990e-10
Identity = 30/99 (30.30%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:   43 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALFQ 339
            +++ P      +T    + F     +++ T+KK +G RKP+ + I+ T       KF+++D+  R   ++WK+ V V+V G  WQFK W W  P+ +F+
Sbjct:  244 IIVVPAGFSDLITLLNAKDFLEDGHYVTTTQKKSEGNRKPASVTIQVTERDVS-YKFKLVDSVIRFSDRDWKSVVGVIVSGQTWQFKDWHWKFPLEVFK 341
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A6H5HBJ7_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HBJ7_9HEMI)

HSP 1 Score: 65.1 bits (157), Expect = 7.320e-10
Identity = 30/99 (30.30%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   43 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWD-QPVALF 336
            +++ P    S +T    +       ++S  EK++ GE++ +E++++R       + +R+IDN  +L   +W+  V V V G AWQFKGW ++  PV +F
Sbjct:  370 IIIIPSATKSLITMYNTKEILQDLRYVSTEEKRQAGEKRANEVLLQRRKDGNTTVPYRVIDNPGKLSSSDWERVVAVFVMGPAWQFKGWPYNGNPVEIF 468
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: UPI0007115428 (parafibromin-like protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007115428)

HSP 1 Score: 62.0 bits (149), Expect = 8.090e-9
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:   43 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 336
            +V++P    + +T   +  F     +IS    + K   KP E+V+ R  + G+ M+FR IDN ++L   EW   VC++     WQF+GW    P  LF
Sbjct:  217 IVVAPSAGNNVITMFNVEQFMEKGEYISSDVMRRKSPLKPQEVVLIREIN-GRPMRFRFIDNPSKLSAGEWDRIVCIIAGTQPWQFRGWRITDPAVLF 313
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BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: G1QAF1_MYOLU (Uncharacterized protein n=1 Tax=Myotis lucifugus TaxID=59463 RepID=G1QAF1_MYOLU)

HSP 1 Score: 61.2 bits (147), Expect = 1.300e-8
Identity = 35/115 (30.43%), Postives = 55/115 (47.83%), Query Frame = 1 
Query:   43 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKR-------MKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEW----DQPVALFQNGKSY 354
            ++  P    SF+TR   +       F+   EKK++G ++  E +  R +    R       +  R++D    L P++W   V V+VQG AWQFKGW W      PV +F   K++
Sbjct:  148 IITIPAATTSFITRLNAKDLLQDLRFVPLDEKKKQGCQREEETIQTRKDPMQPRGTALSLTVPCRVVDPPLTLRPQDWDRVVAVIVQGPAWQFKGWPWLLPHGSPVDVFVKSKAF 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LIK5_ECTSI5.570e-3868.00RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A835YIM7_9STRA5.340e-1840.38RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A7S3Y6H8_HETAK1.630e-1544.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3T3F7_EMIHU8.370e-1446.58Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3WSJ0_EMIHU3.070e-1346.58Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A0A9WF39_LYGHE3.280e-1132.32Parafibromin n=3 Tax=Mirini TaxID=236659 RepID=A0A... [more]
A0A485LTY1_9STRA4.990e-1030.30Aste57867_25225 protein n=1 Tax=Aphanomyces stella... [more]
A0A6H5HBJ7_9HEMI7.320e-1030.30Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
UPI00071154288.090e-932.65parafibromin-like protein n=1 Tax=Blastocystis sp.... [more]
G1QAF1_MYOLU1.300e-830.43Uncharacterized protein n=1 Tax=Myotis lucifugus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85548contigH-elongata_contig85548:345..1386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog2880.D8LIK5
KEGG koko:K15175
GOsGO:0000122,GO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016591,GO:0016593,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034402,GO:0034622,GO:0034641,GO:0036211,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140110,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
EggNOG OGsCOG5157@1,KOG3786@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Exons3
Model size357
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85548.16140.1prot_H-elongata_contig85548.16140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85548 345..1386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.3785272-CDS-H-elongata_contig85548:344..4601622931258.3785272-CDS-H-elongata_contig85548:344..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85548 345..460 +
1691679762.8781054-CDS-H-elongata_contig85548:344..4601691679762.8781054-CDS-H-elongata_contig85548:344..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85548 345..460 +
1622931258.3972654-CDS-H-elongata_contig85548:471..6041622931258.3972654-CDS-H-elongata_contig85548:471..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85548 472..604 +
1691679762.8879857-CDS-H-elongata_contig85548:471..6041691679762.8879857-CDS-H-elongata_contig85548:471..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85548 472..604 +
1622931258.41172-CDS-H-elongata_contig85548:1278..13861622931258.41172-CDS-H-elongata_contig85548:1278..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85548 1279..1386 +
1691679762.8962326-CDS-H-elongata_contig85548:1278..13861691679762.8962326-CDS-H-elongata_contig85548:1278..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85548 1279..1386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85548.16140.1

>prot_H-elongata_contig85548.16140.1 ID=prot_H-elongata_contig85548.16140.1|Name=mRNA_H-elongata_contig85548.16140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
PVPVPSPPEKCLPRVVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKG
ERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQF
KGWEWDQPVALFQNGKSYL
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mRNA from alignment at H-elongata_contig85548:345..1386+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85548.16140.1 ID=mRNA_H-elongata_contig85548.16140.1|Name=mRNA_H-elongata_contig85548.16140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig85548:345..1386+ (Himanthalia elongata Himel1 dioecious)
CCCGTCCCCGTCCCGTCCCCCCCAGAAAAATGCCTTCCACGGGTTGTGTT
AAGTCCTTGGACTAATTTATCGTTTGTAACTAGATGTATGATTCGGTTCT
TCTGTTCTACTGCTGCGTGCTGTCTAGGTTTATCTCTCCCACGGAAAAGA
AAGAGAAAGGGGAGCGCAAGCCGTCGGAGCTCGTGATCGAGCGCACCAAC
TCGCAGGGCAAGCGCATGAAGTTCCGAATCATCGACAACGCGACGAGGCT
GCATCCCAAGGTGCGGCACACCCACGGTACACACATCACATCTACGCGTT
TGCCACAAGCGTCCGTGTTTTGCGGAGTGGCCTTACGGTGGAGTTCCATG
GCCGGGAGCAGGGGAGGGAGAAGAAGGGGGGGGCGGGGGAGGGGGGTGGC
GTATCGAAGTTTTCTTAAAGAGAGGAGAGGAAATTGGTAATTTGTTTTTT
TCCGAGGAGCGTTGGAAGGAGAAAGAGGAAGAGACGGCGGCGCGTGTCGG
GGTTGTTACACGCGGTGGTTTGTCATGGGCAGCCCTTTTTTGTTGTTCTC
GTTTTGTTATTTGAAACTGACTGTGGTGTGGATGAGATGATTTTAACTTG
TTTTTTTTCTGTTTTGTTTTTACCGGGGAAAGTTCGTCCCCCCCCCCCCC
CCCCCTTTTCCCTTTCGCCCCCCCGGGGAAAAAAAAAAGAAAAGGGGCAG
GCATACTACTGTCTTNNNNNNNNNNATTTTTACTTTTTTTTTTTCTGTTT
TGTTTTTACCGGGGACAGTTCGTCCCCCCCCCCCGCCCGATTTCTCTCTG
CCGCGTCGAAGTGAAAACAATGCAAGATGGGACGGATCCTACTCGTTGCT
ATGATATAACGGGTGTGCCCTCGTTGCTGGGTTGTTTAGCCTTCCTCCGC
CTCCCTCCGATTCCCTCTACTCTTATACCTGTAGGAGTGGAAGGCGTGCG
TGTGCGTAGTGGTCCAGGGAGCGGCGTGGCAATTCAAGGGGTGGGAGTGG
GACCAACCGGTAGCGCTATTCCAGAACGGTAAGAGCTATCTC
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Coding sequence (CDS) from alignment at H-elongata_contig85548:345..1386+

>mRNA_H-elongata_contig85548.16140.1 ID=mRNA_H-elongata_contig85548.16140.1|Name=mRNA_H-elongata_contig85548.16140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig85548:345..1386+ (Himanthalia elongata Himel1 dioecious)
CCCGTCCCCGTCCCGTCCCCCCCAGAAAAATGCCTTCCACGGGTTGTGTT
AAGTCCTTGGACTAATTTATCGTTTGTAACTAGATGTATGATTCGGTTCT
TCTGTTCTACTGCTGCCCCGTCCCCGTCCCGTCCCCCCCAGAAAAATGCC
TTCCACGGGTTGTGTTAAGTCCTTGGACTAATTTATCGTTTGTAACTAGA
TGTATGATTCGGTTCTTCTGTTCTACTGCTGCGTTTATCTCTCCCACGGA
AAAGAAAGAGAAAGGGGAGCGCAAGCCGTCGGAGCTCGTGATCGAGCGCA
CCAACTCGCAGGGCAAGCGCATGAAGTTCCGAATCATCGACAACGCGACG
AGGCTGCATCCCAAGGTTTATCTCTCCCACGGAAAAGAAAGAGAAAGGGG
AGCGCAAGCCGTCGGAGCTCGTGATCGAGCGCACCAACTCGCAGGGCAAG
CGCATGAAGTTCCGAATCATCGACAACGCGACGAGGCTGCATCCCAAGGA
GTGGAAGGCGTGCGTGTGCGTAGTGGTCCAGGGAGCGGCGTGGCAATTCA
AGGGGTGGGAGTGGGACCAACCGGTAGCGCTATTCCAGAACGGTAAGAGC
TATCTCGAGTGGAAGGCGTGCGTGTGCGTAGTGGTCCAGGGAGCGGCGTG
GCAATTCAAGGGGTGGGAGTGGGACCAACCGGTAGCGCTATTCCAGAACG
GTAAGAGCTATCTC
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