mRNA_H-elongata_contig854.16130.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig854.16130.1
Unique NamemRNA_H-elongata_contig854.16130.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.900e-30
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHSWGVVEK 213
            DPLD+ RVR ADFPHL++LA  +L IPATQAE ERLFSCAGNIVTKNRN LAP TV+LLVLLRHSW +VE+
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEE 292          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.670e-24
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1
Query:   28 TADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHSWGVVEK 213
            + DFPHL++LA  +L IPATQA+ ERLFSCAGNIVTKNRN LAP TV+LLVLLRHSW +VE+
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEE 212          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: UPI001C9A9669 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9A9669)

HSP 1 Score: 67.4 bits (163), Expect = 1.970e-11
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHSWGVVE 210
            +P ++ + RT  +P +S +A   L IPAT A  ER FSCAGNIVTK RN+L P  V  LV L  +  ++ 
Sbjct:  414 NPFEWWKARTNKYPAISEVAKKYLTIPATSAMSERCFSCAGNIVTKKRNRLLPENVNTLVFLSQNKNLIN 483          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: A0A420IYG9_9PEZI (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420IYG9_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 3.500e-10
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHSW 198
            DPL + +  ++  P L+ LA  +L IPAT A  ER FS + NI+T+NR +L P TVK L+LL+ SW
Sbjct:   58 DPLLYWKNNSSRLPILAILARRVLAIPATSASIERAFSVSNNIITRNRTRLLPNTVKKLILLK-SW 122          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 60.1 bits (144), Expect = 4.040e-10
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHSWGV 204
            +PL + +   A FP L+SLA   L +PAT    ERLFS AGNIV+K R  L+P  + +L    +S  V
Sbjct:   32 NPLQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTFFHYSTAV 99          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: UPI00117E5D88 (zinc finger BED domain-containing protein 4-like n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00117E5D88)

HSP 1 Score: 61.6 bits (148), Expect = 1.080e-9
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHS 195
            DPL + + R   FPHL  L++  L IPAT    ER+FS AG ++TK RN+L P+T + ++ L  +
Sbjct:  169 DPLAYWKERAVVFPHLHKLSNKFLCIPATSVPCERVFSKAGEVITKKRNRLHPSTAEKIIFLNKN 233          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: UPI00076700A3 (zinc finger BED domain-containing protein 4-like n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=UPI00076700A3)

HSP 1 Score: 60.5 bits (145), Expect = 5.460e-9
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLL 186
            +PL++ ++    +PHLS LA  +L  PAT    ER+FS AGN+++K RNKL  +T+  ++LL
Sbjct:  430 NPLEYWKLNATKYPHLSQLAQKVLCCPATSVPSERMFSKAGNMLSKKRNKLKDSTLNKMLLL 491          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: UPI00118120C5 (zinc finger BED domain-containing protein 1-like n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00118120C5)

HSP 1 Score: 60.1 bits (144), Expect = 7.480e-9
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHS 195
            DPL + + R   FPHL  L++  L IPAT    ER+FS AG ++TK RN+L P+T +  + L  +
Sbjct:  437 DPLAYWKERAVVFPHLHKLSNKFLCIPATSVPCERVFSKAGEVITKKRNRLHPSTAEKRIFLNKN 501          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: A0A1A8M216_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M216_9TELE)

HSP 1 Score: 57.8 bits (138), Expect = 8.960e-9
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLL 186
            DPL + +     FP L+ LA+ +L IPAT    ERLFS AGNIV+K R  L+P  V +L  L
Sbjct:   78 DPLIWWKANEQRFPTLAKLANSLLCIPATSTPSERLFSAAGNIVSKKRASLSPEHVDMLTFL 139          
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Match: A0A6J8CHD8_MYTCO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CHD8_MYTCO)

HSP 1 Score: 59.3 bits (142), Expect = 1.370e-8
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNKLAPATVKLLVLLRHSWGVVEK 213
            +PL++ +     FP LS LA   L IPAT    ER+FSCAG I TK RN+L+ + +  +++L  ++   +K
Sbjct:  335 NPLEWWKENNCKFPRLSVLARQYLSIPATSVPSERIFSCAGLIATKLRNRLSSSVIDQIIILNKNYVPEDK 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig854.16130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE4.900e-3077.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE1.670e-2474.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI001C9A96691.970e-1145.71E3 SUMO-protein ligase ZBED1-like n=2 Tax=Colletes... [more]
A0A420IYG9_9PEZI3.500e-1048.48Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A7ZCN3_NOTFU4.040e-1044.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
UPI00117E5D881.080e-943.08zinc finger BED domain-containing protein 4-like n... [more]
UPI00076700A35.460e-943.55zinc finger BED domain-containing protein 4-like n... [more]
UPI00118120C57.480e-943.08zinc finger BED domain-containing protein 1-like n... [more]
A0A1A8M216_9TELE8.960e-948.39Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A6J8CHD8_MYTCO1.370e-839.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=My... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig854contigH-elongata_contig854:10025..10240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931257.4932344-CDS-H-elongata_contig854:10024..102401622931257.4932344-CDS-H-elongata_contig854:10024..10240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig854 10025..10240 +
1691679762.5345259-CDS-H-elongata_contig854:10024..102401691679762.5345259-CDS-H-elongata_contig854:10024..10240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig854 10025..10240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig854.16130.1prot_H-elongata_contig854.16130.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig854 10025..10240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig854.16130.1

>prot_H-elongata_contig854.16130.1 ID=prot_H-elongata_contig854.16130.1|Name=mRNA_H-elongata_contig854.16130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
DPLDFLRVRTADFPHLSSLAHHMLVIPATQAEPERLFSCAGNIVTKNRNK
LAPATVKLLVLLRHSWGVVEKG
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mRNA from alignment at H-elongata_contig854:10025..10240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig854.16130.1 ID=mRNA_H-elongata_contig854.16130.1|Name=mRNA_H-elongata_contig854.16130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig854:10025..10240+ (Himanthalia elongata Himel1 dioecious)
GACCCCTTGGACTTTTTGCGGGTAAGAACCGCGGACTTCCCGCATTTGTC CAGCCTCGCCCACCATATGCTCGTCATCCCAGCGACACAGGCGGAGCCGG AGCGGCTGTTCTCCTGTGCTGGTAACATTGTGACCAAGAATCGTAATAAG CTCGCCCCCGCCACCGTCAAGCTGCTCGTGCTCTTGCGCCACTCGTGGGG GGTGGTGGAGAAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig854:10025..10240+

>mRNA_H-elongata_contig854.16130.1 ID=mRNA_H-elongata_contig854.16130.1|Name=mRNA_H-elongata_contig854.16130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig854:10025..10240+ (Himanthalia elongata Himel1 dioecious)
GACCCCTTGGACTTTTTGCGGGTAAGAACCGCGGACTTCCCGCATTTGTC
CAGCCTCGCCCACCATATGCTCGTCATCCCAGCGACACAGGCGGAGCCGG
AGCGGCTGTTCTCCTGTGCTGGTAACATTGTGACCAAGAATCGTAATAAG
CTCGCCCCCGCCACCGTCAAGCTGCTCGTGCTCTTGCGCCACTCGTGGGG
GGTGGTGGAGAAGGGGGACCCCTTGGACTTTTTGCGGGTAAGAACCGCGG
ACTTCCCGCATTTGTCCAGCCTCGCCCACCATATGCTCGTCATCCCAGCG
ACACAGGCGGAGCCGGAGCGGCTGTTCTCCTGTGCTGGTAACATTGTGAC
CAAGAATCGTAATAAGCTCGCCCCCGCCACCGTCAAGCTGCTCGTGCTCT
TGCGCCACTCGTGGGGGGTGGTGGAGAAGGGG
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