mRNA_H-elongata_contig8528.16121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8528.16121.1
Unique NamemRNA_H-elongata_contig8528.16121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8528.16121.1 vs. uniprot
Match: A0A6H5L5P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 VWILKPVGKSRGRGIRLFDDIKSISYAEK 87
            +WI+KPVG SRGRGIRL DDIK I YA+K
Sbjct: 1068 LWIMKPVGMSRGRGIRLIDDIKDICYADK 1096
[Close]
BLAST of mRNA_H-elongata_contig8528.16121.1 vs. uniprot
Match: D7FTB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB8_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 VWILKPVGKSRGRGIRLFDDIKSISYAEK 87
            +WI+KPVG SRGRGIRL DDIK I YA+K
Sbjct:  822 LWIMKPVGMSRGRGIRLIDDIKDICYADK 850
[Close]
BLAST of mRNA_H-elongata_contig8528.16121.1 vs. uniprot
Match: A0A7S1CEF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEF5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.460e-5
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:    1 VWILKPVGKSRGRGIRLFDDIKSISYAEK 87
            VWI+KPVG SRGRGIRL  DI S+SY E+
Sbjct:  297 VWIMKPVGSSRGRGIRLIKDIGSVSYGER 325
[Close]
BLAST of mRNA_H-elongata_contig8528.16121.1 vs. uniprot
Match: G0R4B5_ICHMG (Tubulin-tyrosine ligase family protein, putative (Fragment) n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R4B5_ICHMG)

HSP 1 Score: 47.4 bits (111), Expect = 7.020e-5
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    1 VWILKPVGKSRGRGIRLFDDIKSISYAE 84
            +WI+KPVGKS+GRGI+L +DI  ++YAE
Sbjct:  256 IWIMKPVGKSQGRGIQLINDISQVNYAE 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8528.16121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L5P9_9PHAE2.230e-675.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTB8_ECTSI2.230e-675.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CEF5_9STRA1.460e-572.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
G0R4B5_ICHMG7.020e-564.29Tubulin-tyrosine ligase family protein, putative (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8528contigH-elongata_contig8528:8141..8272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931256.6858437-CDS-H-elongata_contig8528:8140..82721622931256.6858437-CDS-H-elongata_contig8528:8140..8272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8528 8141..8272 -
1691679762.2273386-CDS-H-elongata_contig8528:8140..82721691679762.2273386-CDS-H-elongata_contig8528:8140..8272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8528 8141..8272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8528.16121.1prot_H-elongata_contig8528.16121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8528 8141..8272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8528.16121.1

>prot_H-elongata_contig8528.16121.1 ID=prot_H-elongata_contig8528.16121.1|Name=mRNA_H-elongata_contig8528.16121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
VWILKPVGKSRGRGIRLFDDIKSISYAEKARYSEPDLETLYFH*
back to top

mRNA from alignment at H-elongata_contig8528:8141..8272-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8528.16121.1 ID=mRNA_H-elongata_contig8528.16121.1|Name=mRNA_H-elongata_contig8528.16121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig8528:8141..8272- (Himanthalia elongata Himel1 dioecious)
GTGTGGATTTTGAAGCCCGTTGGAAAATCACGTGGCAGGGGGATCAGGCT
TTTTGACGACATTAAAAGCATCAGCTATGCGGAAAAGGCGCGCTATTCTG
AACCTGATCTCGAAACTTTGTACTTTCATTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8528:8141..8272-

>mRNA_H-elongata_contig8528.16121.1 ID=mRNA_H-elongata_contig8528.16121.1|Name=mRNA_H-elongata_contig8528.16121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig8528:8141..8272- (Himanthalia elongata Himel1 dioecious)
GTGTGGATTTTGAAGCCCGTTGGAAAATCACGTGGCAGGGGGATCAGGCT
TTTTGACGACATTAAAAGCATCAGCTATGCGGAAAAGGCGCGCTATTCTG
AACCTGATCTCGAAACTTTGTACTTTCATTAGGTGTGGATTTTGAAGCCC
GTTGGAAAATCACGTGGCAGGGGGATCAGGCTTTTTGACGACATTAAAAG
CATCAGCTATGCGGAAAAGGCGCGCTATTCTGAACCTGATCTCGAAACTT
TGTACTTTCATTAG
back to top