mRNA_H-elongata_contig85270.16119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85270.16119.1
Unique NamemRNA_H-elongata_contig85270.16119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A7S1GNY7_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNY7_CYCTE)

HSP 1 Score: 115 bits (287), Expect = 1.060e-31
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGIK 192
            QEYFG+ PDVTT+GKVIGGGLPVGAYGGR+DIME VAPAGPMYQAGTLSGNPLAMTAGI+
Sbjct:   38 QEYFGITPDVTTMGKVIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIE 97
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A7R9VXM4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXM4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.300e-31
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGIK 192
            QEYFG+ PDVTT+GKVIGGGLPVGAYGGRK+IME+VAPAGPMYQAGTLSGNPLAMTAGI+
Sbjct:    1 QEYFGITPDVTTMGKVIGGGLPVGAYGGRKEIMEMVAPAGPMYQAGTLSGNPLAMTAGIE 60
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: B7FL36_MEDTR (Uncharacterized protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=B7FL36_MEDTR)

HSP 1 Score: 115 bits (287), Expect = 6.210e-31
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGIK 192
            QEYFG+ PD+TTLGK+IGGGLPVGAYGGR+DIME VAPAGPMYQAGTLSGNPLAMTAGI+
Sbjct:   12 QEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIE 71
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A0K9NKH7_ZOSMR (Glutamate-1-semialdehyde 2,1-aminomutase, C-terminal part n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NKH7_ZOSMR)

HSP 1 Score: 115 bits (287), Expect = 1.130e-30
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGI 189
            QEYFG+ PD+TT+GK+IGGGLPVGAYGGR+DIME+VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct:   35 QEYFGITPDITTMGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 93
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A0A9CNE8_ARUDO (Uncharacterized protein n=3 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CNE8_ARUDO)

HSP 1 Score: 114 bits (285), Expect = 1.250e-30
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGI 189
            QE+FG+ PDVTTLGK+IGGGLPVGAYGGR+DIME+VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct:   12 QEHFGITPDVTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 70
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A7R9YGA8_9STRA (Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGA8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.420e-30
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGIK 192
            QEYFGV PDVTT+GKVIGGGLPVGAYGGRKDIME+VAPAGPMYQAGTLSGNPLAMTAGIK
Sbjct:  288 QEYFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIK 347
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A7S3TAB5_9SPIT (Hypothetical protein n=2 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TAB5_9SPIT)

HSP 1 Score: 113 bits (282), Expect = 2.570e-30
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:   16 EYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGIK 192
            EYFGV PDVTT+GKVIGGGLPVGAYGGR+DIME VAPAGPMYQAGTLSGNPLAMTAGI+
Sbjct:    1 EYFGVTPDVTTMGKVIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIE 59
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A7S0CAV4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAV4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.790e-30
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGIK 192
            QEYFGV PDVTT+GKVIGGGLPVGAYGGR+DIME+VAPAGPMYQAGTLSGNPLAMTAGI+
Sbjct:  137 QEYFGVTPDVTTMGKVIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIE 196
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A088C915_9POAL (Glutamate-1-semialdehyde 2,1-aminomutase (Fragment) n=2 Tax=Phyllostachys TaxID=15747 RepID=A0A088C915_9POAL)

HSP 1 Score: 117 bits (293), Expect = 4.390e-30
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGI 189
            QEYFG+ PDVTTLGK+IGGGLPVGAYGGRKDIME+VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct:  296 QEYFGITPDVTTLGKIIGGGLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 354
[Close]
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Match: A0A7S0B0S7_9STRA (Glutamate-1-semialdehyde 2,1-aminomutase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0S7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.930e-30
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   13 QEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAGTLSGNPLAMTAGIK 192
            QEYFGV PD+TT+GKVIGGGLPVGAYGGRKDIME+VAPAGPMYQAGTLSGNPLAMTAGI+
Sbjct:  238 QEYFGVTPDITTMGKVIGGGLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIE 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85270.16119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GNY7_CYCTE1.060e-3190.00Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7R9VXM4_9STRA2.300e-3190.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B7FL36_MEDTR6.210e-3188.33Uncharacterized protein n=1 Tax=Medicago truncatul... [more]
A0A0K9NKH7_ZOSMR1.130e-3088.14Glutamate-1-semialdehyde 2,1-aminomutase, C-termin... [more]
A0A0A9CNE8_ARUDO1.250e-3089.83Uncharacterized protein n=3 Tax=Arundo donax TaxID... [more]
A0A7R9YGA8_9STRA2.420e-3095.00Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=P... [more]
A0A7S3TAB5_9SPIT2.570e-3091.53Hypothetical protein n=2 Tax=Strombidinopsis acumi... [more]
A0A7S0CAV4_9STRA2.790e-3091.67Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A088C915_9POAL4.390e-3093.22Glutamate-1-semialdehyde 2,1-aminomutase (Fragment... [more]
A0A7S0B0S7_9STRA5.930e-3091.67Glutamate-1-semialdehyde 2,1-aminomutase (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85270contigH-elongata_contig85270:444..1298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue2.8e-25
Seed eggNOG ortholog2880.D7G5Q0
Preferred nameGSA1
KEGG rclassRC00677
KEGG koko:K01845
KEGG ReactionR02272
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046
EggNOG free text desc.N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EggNOG OGsCOG4992@1,KOG1401@2759
EC5.4.3.8
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s3_g10316_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionglutamate-1-semialdehyde 2,1-aminomutase, putative chloroplast precursor
Ec32 orthologEc-12_008690.1
Exons2
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931256.427381-CDS-H-elongata_contig85270:443..5001622931256.427381-CDS-H-elongata_contig85270:443..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85270 444..500 +
1691679762.0976424-CDS-H-elongata_contig85270:443..5001691679762.0976424-CDS-H-elongata_contig85270:443..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85270 444..500 +
1622931256.4509768-CDS-H-elongata_contig85270:1163..12981622931256.4509768-CDS-H-elongata_contig85270:1163..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85270 1164..1298 +
1691679762.112749-CDS-H-elongata_contig85270:1163..12981691679762.112749-CDS-H-elongata_contig85270:1163..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85270 1164..1298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85270.16119.1prot_H-elongata_contig85270.16119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85270 444..1298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85270.16119.1

>prot_H-elongata_contig85270.16119.1 ID=prot_H-elongata_contig85270.16119.1|Name=mRNA_H-elongata_contig85270.16119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MSIRQEYFGVIPDVTTLGKVIGGGLPVGAYGGRKDIMELVAPAGPMYQAG
TLSGNPLAMTAGIK
back to top

mRNA from alignment at H-elongata_contig85270:444..1298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85270.16119.1 ID=mRNA_H-elongata_contig85270.16119.1|Name=mRNA_H-elongata_contig85270.16119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at H-elongata_contig85270:444..1298+ (Himanthalia elongata Himel1 dioecious)
ATGTCGATTCGGCAGGAGTACTTCGGCGTGATCCCTGACGTGACCACATT
GGGCAAGGTAAGCTCTTGACCTATTGTTCCTGTTTGCTTGTGCTTGATGT
CGTCGGTGATTCCAACCAAAATATATAAATATCTGTGTTGTCTTGGTTGT
TGAGTCTAATATTTAGGGCGCATACATTTAAGTTTAGGAGCAATCGATAG
TCACGTTTTTGATGGGATGGCGTCAGAATCCCACCCGATCCTCTTTCTAT
CTCATTGATTGATTTGCTTTTGCAATAGCAATTTGGAGAAGGCATGATTC
AATCGAATCAGTAAATATCTCATATCTCGTCAAAACTTAAAACAACCAAG
GAGGCAAATCACAGCCACAATGAAATTTATTGGCACAGATGGAGTGGGAA
AACGGTGCGAGCATGTGCAAGGATGCTGCCTCGAAGAAAAACGCACGCGA
AAATTCGACACGTCCTCCTCCCGATTCTATCAGATACCGATATGATTTGA
GACCGTGTCTCCCAGCATTTCCTTGTAGGCGGTTGAACAAGTCACACCCG
TCCCTCTATGTATATCAAATCATTTCAACCCTCGCGTCATTCATGCATTT
TCTATTCGGCGGTATTCATACGAGTGGTTATAAAGACTAAATGAATATAT
AGATAGTATATAGGTAGACTCTAAATGATATGGTAGCATTTATGTATGCT
TCCTGCGTCAATGTGTGCAGGTTATTGGAGGTGGTCTACCCGTCGGTGCG
TACGGCGGACGCAAGGACATAATGGAATTGGTGGCTCCAGCGGGTCCCAT
GTACCAGGCAGGAACGCTTTCCGGCAACCCTCTGGCTATGACCGCGGGCA
TTAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig85270:444..1298+

>mRNA_H-elongata_contig85270.16119.1 ID=mRNA_H-elongata_contig85270.16119.1|Name=mRNA_H-elongata_contig85270.16119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig85270:444..1298+ (Himanthalia elongata Himel1 dioecious)
ATGTCGATTCGGCAGGAGTACTTCGGCGTGATCCCTGACGTGACCACATT
GGGCAAGATGTCGATTCGGCAGGAGTACTTCGGCGTGATCCCTGACGTGA
CCACATTGGGCAAGGTTATTGGAGGTGGTCTACCCGTCGGTGCGTACGGC
GGACGCAAGGACATAATGGAATTGGTGGCTCCAGCGGGTCCCATGTACCA
GGCAGGAACGCTTTCCGGCAACCCTCTGGCTATGACCGCGGGCATTAAGG
TTATTGGAGGTGGTCTACCCGTCGGTGCGTACGGCGGACGCAAGGACATA
ATGGAATTGGTGGCTCCAGCGGGTCCCATGTACCAGGCAGGAACGCTTTC
CGGCAACCCTCTGGCTATGACCGCGGGCATTAAG
back to top