mRNA_H-elongata_contig85262.16115.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85262.16115.1
Unique NamemRNA_H-elongata_contig85262.16115.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: A0A6H5L3T5_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.380e-27
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 LVKLYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            LVK++SP++ ++  EIGRTEIISNSL+P+FVTI+P+TFKFEE+QTL FEVYDVDTAY SSD+  IDPS+Q    A  C L
Sbjct:   71 LVKIHSPSDSNESKEIGRTEIISNSLDPKFVTIVPVTFKFEEVQTLRFEVYDVDTAYSSSDATHIDPSKQDFQGAAECAL 150
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: D7FXN1_ECTSI (Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 8.990e-27
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 LVKLYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            LVKL+SP++ ++  EIGRTEIISNSL+P FVTI+P+TFKFEE+QTL FEVYDVDTAY SSD+  IDPS+Q    A  C L
Sbjct:   37 LVKLHSPSDSNESKEIGRTEIISNSLDPNFVTIVPVTFKFEEVQTLRFEVYDVDTAYSSSDATLIDPSKQDFQGAAECVL 116
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.370e-26
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 LVKLYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            LVKL+SP++ ++  EIGRTEII+NSL+P+FVTI+P+TFKFEE+QTL FEVYDVDTAY SSD+  IDPS+Q    A  C L
Sbjct:   67 LVKLHSPSDGNESKEIGRTEIITNSLDPKFVTIVPVTFKFEEVQTLRFEVYDVDTAYSSSDATHIDPSKQDFQGAAECAL 146
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: D7G7Q5_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.100e-14
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   43 EIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            EIGRTE+++N+L PRFVT++P TF+FEE+Q L F+VYDV+ ++ +SD+  +D   Q S     C L
Sbjct:   80 EIGRTEVVANNLSPRFVTLVPATFRFEEVQMLRFDVYDVEGSFTTSDASRLDVRMQTSQGTAECAL 145
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: UPI001CFAD446 (protein BONZAI 1-like n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFAD446)

HSP 1 Score: 63.9 bits (154), Expect = 4.550e-10
Identity = 28/80 (35.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:    1 LVKLYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            ++ +Y+       +E+GRTE++ NSL P ++T   I+++FE +QTL F +YDVDT + ++D + +    Q       CTL
Sbjct:   68 MLVIYTKARDGAVIEVGRTEVVLNSLSPAWITKYTISYQFEVVQTLQFRIYDVDTQFHNADVKMLKLEEQQFLGEATCTL 147
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: A0A2J6MH02_LACSA (C2 domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6MH02_LACSA)

HSP 1 Score: 62.8 bits (151), Expect = 1.150e-9
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   10 LYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            +Y+  +     E+GRTE++ NSL P+++T I IT+ FE +QTL F VYDVDT + S D +++    Q       C L
Sbjct:   71 VYTKGKDGSLQELGRTEVVLNSLNPKWITKIKITYYFEMVQTLLFRVYDVDTQFHSPDIKTLKLDDQQYLGEATCAL 147
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: A0A6V7PBZ1_ANACO (Uncharacterized protein n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6V7PBZ1_ANACO)

HSP 1 Score: 62.4 bits (150), Expect = 1.590e-9
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:    1 LVKLYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            +V LY+  +  +  EIGRTE+I NSL P ++T   I ++FE +Q L F+VYDVDT Y S+  + +  S Q       C L
Sbjct:   90 MVVLYAKKQDGRLEEIGRTEVILNSLNPSWITKFFINYQFEIVQPLVFQVYDVDTKYHSTPVKMLKLSEQDYVGEASCVL 169
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: A0A0J8DXR4_BETVV (Uncharacterized protein n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8DXR4_BETVV)

HSP 1 Score: 62.0 bits (149), Expect = 2.170e-9
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:   10 LYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            +Y    + +  E+GRTE++SNSL P ++  + +T+ FE +QTLTF VYDVDT +   D + +    Q       CTL
Sbjct:   75 IYMKGRNGRLEELGRTEVVSNSLNPTWIEKVNVTYHFELLQTLTFRVYDVDTQFHHVDVQMLKLDEQQFLGEASCTL 151
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: UPI0005C9F65E (protein BONZAI 1-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C9F65E)

HSP 1 Score: 62.0 bits (149), Expect = 2.220e-9
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    1 LVKLYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            +V +Y+       VE+GRTE++ NSL P+++T   IT+ FE +QTL F VYDVDT + + D + +    Q       C L
Sbjct:  503 MVVIYTKGRDGGLVELGRTEVVLNSLNPKWITKHNITYHFEVVQTLVFRVYDVDTQFHNVDVKMLKLDEQQFLGEATCAL 582
[Close]
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Match: A0A2H5PGW9_CITUN (C2 domain-containing protein n=7 Tax=Citrus TaxID=2706 RepID=A0A2H5PGW9_CITUN)

HSP 1 Score: 61.2 bits (147), Expect = 4.040e-9
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   40 VEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEVYDVDTAYGSSDSRSIDPSRQVSYCAVPCTL 240
            VE+GRTE++ NSL P ++T   IT++FE +QTL F +YDVDT + + D +++    Q       CTL
Sbjct:   83 VEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTL 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85262.16115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3T5_9PHAE7.380e-2766.25C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FXN1_ECTSI8.990e-2767.50Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5LMQ8_9PHAE1.370e-2666.25C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D7G7Q5_ECTSI2.100e-1450.00C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
UPI001CFAD4464.550e-1035.00protein BONZAI 1-like n=2 Tax=Anacardiaceae TaxID=... [more]
A0A2J6MH02_LACSA1.150e-940.26C2 domain-containing protein n=3 Tax=Lactuca TaxID... [more]
A0A6V7PBZ1_ANACO1.590e-941.25Uncharacterized protein n=4 Tax=Ananas comosus Tax... [more]
A0A0J8DXR4_BETVV2.170e-938.96Uncharacterized protein n=2 Tax=Beta vulgaris subs... [more]
UPI0005C9F65E2.220e-938.75protein BONZAI 1-like n=1 Tax=Fragaria vesca subsp... [more]
A0A2H5PGW9_CITUN4.040e-943.28C2 domain-containing protein n=7 Tax=Citrus TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85262contigH-elongata_contig85262:80..1628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1e-21
Seed eggNOG ortholog2880.D7FXN0
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
EggNOG free text desc.negative regulation of response to water deprivation
EggNOG OGsKOG1327@1,KOG1327@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.822378-CDS-H-elongata_contig85262:79..1871622931255.822378-CDS-H-elongata_contig85262:79..187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85262 80..187 +
1691679761.8689516-CDS-H-elongata_contig85262:79..1871691679761.8689516-CDS-H-elongata_contig85262:79..187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85262 80..187 +
1622931255.8412366-CDS-H-elongata_contig85262:1496..16281622931255.8412366-CDS-H-elongata_contig85262:1496..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85262 1497..1628 +
1691679761.8863528-CDS-H-elongata_contig85262:1496..16281691679761.8863528-CDS-H-elongata_contig85262:1496..1628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85262 1497..1628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85262.16115.1prot_H-elongata_contig85262.16115.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85262 80..1628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85262.16115.1

>prot_H-elongata_contig85262.16115.1 ID=prot_H-elongata_contig85262.16115.1|Name=mRNA_H-elongata_contig85262.16115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
LVKLYSPTEHSQPVEIGRTEIISNSLEPRFVTIIPITFKFEEIQTLTFEV
YDVDTAYGSSDSRSIDPSRQVSYCAVPCTL
back to top

mRNA from alignment at H-elongata_contig85262:80..1628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85262.16115.1 ID=mRNA_H-elongata_contig85262.16115.1|Name=mRNA_H-elongata_contig85262.16115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1549bp|location=Sequence derived from alignment at H-elongata_contig85262:80..1628+ (Himanthalia elongata Himel1 dioecious)
TTGGTCAAGCTCTACTCCCCGACCGAACACAGCCAACCCGTGGAGATTGG
ACGGACGGAAATAATCTCCAACAGCCTCGAACCGAGATTCGTGACGATTA
TACCCATCGTGAGGCTGCAGCATAATTTTTATTTAAAAGACTTTAGGCTC
ATTCTAACTCTCCGAGCATCCACACCTTCTATACTGTAATACTAATACTA
CCGTAATACTAATACTACTGTAATACTAGTACTGTAATACTAATGCTAAT
ACTGTAATACCATATAAATAAGTTATTATACTGTAATACTAGTACTGTAA
TACTAATGCTAATGCTGTAATACCATATAAATAAGTTATTATACTGTAAT
ACTAGTACTGTAATACTAATGCTAATGCTGTATTACCATATAAATAAGTT
ATTATACTGTAATACTAGTACTGTAATACTAATGCTAATGCTGTATTACC
ATATAAATAAGTTATTATACTGTAATACTAGTTCTGTAAAAATACTGTAA
TACTAGTACTGTAACTAATACTAATAATAGAGGGGCCAAGGTAATGGCAG
CATGATACTGTAGCGTTATATACCCATAGCAAGATGTCATTAAAACATTA
TATAGTGTGTTTTACAGTGTTGTATATATCATTACATCCCTACTATTAAT
AATAGCAAGACATTGCTAGTTTGAGGTCCTTATACACTTTTTCACACCCA
TAGTTTTTAATAAAAACACCTGCACAGTCCCGTGCCGCGCACTGGCCTTG
GTCGAGTGAATCCCAAGTTTGTATGATACTTTAAAAACGACGGTTTTGAG
AGCCCGGGAGGATCATGCCATATCATGTCATATCATGTCATATCATGTCA
TATTATGTCATATTATGTCATAAAAGACGTGACAAGGACAACTTTTCAGG
GAAAAAAAAAACAAAAACGAGAAAGCGATGACTACATTGTCTTTCATTTT
TACCAAATTATACCATAATAGTAACACTAATAACTGTGGCGCACACGAGT
TCATGCATCATTTGGTACCATGTAAAAAAAAAAACATACGCACAGACAAT
AGATGGTCGCACCTCATGTTTGCTACAGTACGTGAGGGGGAAGAACGTCG
CAGGACATTTGTTTACAAATGCCCACGCCCATTCCCAACATTTGTTTTAT
GTTTTATTTTTACCTGCTTTTTATTCGTCAATCGTGAGTCCTTGCTGCTT
TGATTGCTTGCTCGTATCTATTTATTATCATTTTTGTGTTTGTTTGTTTG
GTTTTTATGGGTTTTTTCTGTATTATGATTTTTGCGTGTTTTTATTTTTT
ATTTAATTTTATTTTTATGTGTCTCTTGTGTGCATTTCAAAATTTCCTCC
CTGATGGGTGTGAAAACACCGCATTTTTATGGCGCTTCATCGGATGGGTC
AACATTCAATGAGCCAGACCTTCAAGTTCGAGGAGATCCAGACCCTGACC
TTCGAGGTATACGACGTCGATACCGCCTACGGCTCCTCGGATTCGAGGTC
CATCGATCCTTCTCGACAGGTATCTTATTGCGCTGTACCTTGTACCTTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig85262:80..1628+

>mRNA_H-elongata_contig85262.16115.1 ID=mRNA_H-elongata_contig85262.16115.1|Name=mRNA_H-elongata_contig85262.16115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig85262:80..1628+ (Himanthalia elongata Himel1 dioecious)
TTGGTCAAGCTCTACTCCCCGACCGAACACAGCCAACCCGTGGAGATTGG
ACGGACGGAAATAATCTCCAACAGCCTCGAACCGAGATTCGTGACGATTA
TACCCATCTTGGTCAAGCTCTACTCCCCGACCGAACACAGCCAACCCGTG
GAGATTGGACGGACGGAAATAATCTCCAACAGCCTCGAACCGAGATTCGT
GACGATTATACCCATCACCTTCAAGTTCGAGGAGATCCAGACCCTGACCT
TCGAGGTATACGACGTCGATACCGCCTACGGCTCCTCGGATTCGAGGTCC
ATCGATCCTTCTCGACAGGTATCTTATTGCGCTGTACCTTGTACCTTGAC
CTTCAAGTTCGAGGAGATCCAGACCCTGACCTTCGAGGTATACGACGTCG
ATACCGCCTACGGCTCCTCGGATTCGAGGTCCATCGATCCTTCTCGACAG
GTATCTTATTGCGCTGTACCTTGTACCTTG
back to top