mRNA_H-elongata_contig85242.16114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85242.16114.1
Unique NamemRNA_H-elongata_contig85242.16114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85242.16114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85242contigH-elongata_contig85242:1782..2174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.7565756-UTR-H-elongata_contig85242:1781..17931622931255.7565756-UTR-H-elongata_contig85242:1781..1793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85242 1782..1793 +
1691679761.8397913-UTR-H-elongata_contig85242:1781..17931691679761.8397913-UTR-H-elongata_contig85242:1781..1793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85242 1782..1793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.7707815-CDS-H-elongata_contig85242:1793..21741622931255.7707815-CDS-H-elongata_contig85242:1793..2174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85242 1794..2174 +
1691679761.856765-CDS-H-elongata_contig85242:1793..21741691679761.856765-CDS-H-elongata_contig85242:1793..2174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85242 1794..2174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85242.16114.1prot_H-elongata_contig85242.16114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85242 1794..2174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85242.16114.1

>prot_H-elongata_contig85242.16114.1 ID=prot_H-elongata_contig85242.16114.1|Name=mRNA_H-elongata_contig85242.16114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MSTRSNVRSFFAKIAVNGKELAFCKVAGCTKNDRYVYGSPTSPLIVHMST
KHPAVWNQNDSAPKRRSMMEQYMKTSPTLELAALKWIVLNNQPISAMDNE
WFRMMIEATNSKLDVPKAKVTFFPQP*
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mRNA from alignment at H-elongata_contig85242:1782..2174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85242.16114.1 ID=mRNA_H-elongata_contig85242.16114.1|Name=mRNA_H-elongata_contig85242.16114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig85242:1782..2174+ (Himanthalia elongata Himel1 dioecious)
AAACGCTCCAAGATGTCTACAAGGAGTAACGTCCGGTCGTTCTTCGCGAA
AATAGCTGTCAACGGAAAGGAGCTTGCTTTCTGCAAAGTGGCAGGTTGCA
CGAAGAATGACAGGTACGTGTATGGTTCTCCTACAAGCCCTCTCATCGTG
CACATGAGTACAAAACACCCCGCCGTCTGGAATCAAAACGATTCCGCGCC
AAAGCGACGCAGCATGATGGAGCAATACATGAAGACATCTCCAACCTTGG
AACTGGCAGCGTTGAAGTGGATTGTGCTCAACAATCAACCCATCTCTGCT
ATGGACAACGAATGGTTTAGGATGATGATCGAGGCGACGAACTCTAAGCT
GGACGTGCCCAAAGCGAAGGTGACGTTTTTCCCGCAGCCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig85242:1782..2174+

>mRNA_H-elongata_contig85242.16114.1 ID=mRNA_H-elongata_contig85242.16114.1|Name=mRNA_H-elongata_contig85242.16114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig85242:1782..2174+ (Himanthalia elongata Himel1 dioecious)
ATGTCTACAAGGAGTAACGTCCGGTCGTTCTTCGCGAAAATAGCTGTCAA
CGGAAAGGAGCTTGCTTTCTGCAAAGTGGCAGGTTGCACGAAGAATGACA
GGTACGTGTATGGTTCTCCTACAAGCCCTCTCATCGTGCACATGAGTACA
AAACACCCCGCCGTCTGGAATCAAAACGATTCCGCGCCAAAGCGACGCAG
CATGATGGAGCAATACATGAAGACATCTCCAACCTTGGAACTGGCAGCGT
TGAAGTGGATTGTGCTCAACAATCAACCCATCTCTGCTATGGACAACGAA
TGGTTTAGGATGATGATCGAGGCGACGAACTCTAAGCTGGACGTGCCCAA
AGCGAAGGTGACGTTTTTCCCGCAGCCGTAAATGTCTACAAGGAGTAACG
TCCGGTCGTTCTTCGCGAAAATAGCTGTCAACGGAAAGGAGCTTGCTTTC
TGCAAAGTGGCAGGTTGCACGAAGAATGACAGGTACGTGTATGGTTCTCC
TACAAGCCCTCTCATCGTGCACATGAGTACAAAACACCCCGCCGTCTGGA
ATCAAAACGATTCCGCGCCAAAGCGACGCAGCATGATGGAGCAATACATG
AAGACATCTCCAACCTTGGAACTGGCAGCGTTGAAGTGGATTGTGCTCAA
CAATCAACCCATCTCTGCTATGGACAACGAATGGTTTAGGATGATGATCG
AGGCGACGAACTCTAAGCTGGACGTGCCCAAAGCGAAGGTGACGTTTTTC
CCGCAGCCGTAA
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