mRNA_H-elongata_contig85220.16111.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.620e-31 Identity = 72/167 (43.11%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 1 EAVGQRYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDC-ECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKR 498
+AVG + Q FVYLG I G + EI R A CF + S+A+Y+ P + KVR L+ EV+E +LY CVTW L P ++ KLR AH LLRCI R D LSY ++ C E +E V KR +AG V RM D+RLP I + GE+ GG R
Sbjct: 116 DAVGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIG--WKKRERKD-RPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGAR 279
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 119 bits (297), Expect = 8.950e-28 Identity = 59/164 (35.98%), Postives = 89/164 (54.27%), Query Frame = 1
Query: 1 EAVGQRYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGG 492
EA GQ+Y+Q F YLG ++ GD+ EI R+ AW C +Y + L++ P K+R L+ E +E +LY C+TW+ G + LR H +LLR I R Y LSY ++ R +C+ +E + ++ +AG + R D RLP +M GE+ GG
Sbjct: 345 EAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGY---KRKKDTYRQLSYAQMLKRVECQRVEATIRQQRLLFAGALERQSDGRLPKRLMFGELAGG 505
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 99.4 bits (246), Expect = 1.410e-22 Identity = 59/158 (37.34%), Postives = 76/158 (48.10%), Query Frame = 1
Query: 187 LKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKR--GQPA-------------KCLEHRVTEYCTAFGIDPKCWMRATQDAPEWYR 615
LK EV+E +LY CVTWTL+ F KLR AH +LLR I R D+ LSY + T CE IE + KR +AG V R H+ RLP+ +M G + GG + GQP K E + FG+ W A + +WYR
Sbjct: 2 LKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRT--DHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYR 157
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395) HSP 1 Score: 104 bits (259), Expect = 1.840e-22 Identity = 64/198 (32.32%), Postives = 92/198 (46.46%), Query Frame = 1
Query: 16 RYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKRGQPAKCLEHRVTEYCTAFGIDPKCWMRATQDAPEW 609
R VDTFVYLG TIS G + EI RT A F K K ++++ I + K+ +L +LY WT +L H+ L R +N + PD GV+ +C IE +MK +AGHV RM D+R+P + GE++ GKR + +P K + + AF I + W + EW
Sbjct: 204 RLEFVDTFVYLGSTISRDGSLDAEINLRTQKASIAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLETFHQKCLRRILNIKWQS-LTPDT------GVLQIAECPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEW 394
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF) HSP 1 Score: 103 bits (257), Expect = 4.250e-22 Identity = 62/199 (31.16%), Postives = 94/199 (47.24%), Query Frame = 1
Query: 16 RYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLR-TDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKRGQPAKCLEHRVTEYCTAFGIDPKCWMRATQDAPEW 609
R VDTFVYLG TIS G + EI RT + F K K ++++ I + K+ +L +LY WT +L+ H+ L R +N + L+ VL+ +C IE +MK +AGHV RM D+R+P + GE++ GKR++ +P K + + AF I + W + EW
Sbjct: 329 RLEVVDTFVYLGSTISRDGSLDAEINLRTQKSSAAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLKRFHQKCLRRILNI--------KWRSLTSDTAVLQIAECPTIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEW 519
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58) HSP 1 Score: 102 bits (254), Expect = 7.380e-22 Identity = 62/198 (31.31%), Postives = 90/198 (45.45%), Query Frame = 1
Query: 16 RYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKRGQPAKCLEHRVTEYCTAFGIDPKCWMRATQDAPEW 609
R VDTFVYLG TIS G + EI RT F K K ++++ I + K+ +L +LY WT +L H+ L R +N + PD +L +C IE +MK +AGHV RM D+R+P + GE++ GKR + +P K + + AF I + W + EW
Sbjct: 151 RLEVVDTFVYLGSTISRDGSLDAEINLRTQKTGTAFGKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLERFHQKCLRRILNIKWQS-LTPDTAVLQI------AECPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEW 341
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 96.3 bits (238), Expect = 2.210e-20 Identity = 60/200 (30.00%), Postives = 90/200 (45.00%), Query Frame = 1
Query: 10 GQRYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKRGQPAKCLEHRVTEYCTAFGIDPKCWMRATQDAPEW 609
GQ+ TF YLG TIS + EI+RR A + F + ++ + I + K+ K V+ +LY TWTL KL EA + LR I P +L R C +E + KR +AGH+ RM D+RLP I++ GE+ G R G+P K + + + + + + W +D W
Sbjct: 103 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTPHSEVLE------RAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASW 295
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT) HSP 1 Score: 96.7 bits (239), Expect = 5.790e-20 Identity = 61/200 (30.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query: 10 GQRYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKRGQPAKCLEHRVTEYCTAFGIDPKCWMRATQDAPEW 609
GQ+ TF YLG TIS+ + EI+RR A + F + ++ + I + K+ KV V+ +LY TWTL KL EA + LR I P +L R C +E + KR +AGH+ RM D+RLP I++ GE+ G R G+P K + + + + + + W +D W
Sbjct: 170 GQKLKTTKTFPYLGSTISNDEQLHHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTPHSEVLE------RAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASW 362
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT) HSP 1 Score: 96.3 bits (238), Expect = 1.530e-19 Identity = 60/200 (30.00%), Postives = 90/200 (45.00%), Query Frame = 1
Query: 10 GQRYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKRGQPAKCLEHRVTEYCTAFGIDPKCWMRATQDAPEW 609
GQ+ TF YLG TIS + EI+RR A + F + ++ + I + K+ K V+ +LY TWTL KL EA + LR I P +L R C +E + KR +AGH+ RM D+RLP I++ GE+ G R G+P K + + + + + + W +D W
Sbjct: 456 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTPHSEVLE------RAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASW 648
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR) HSP 1 Score: 94.4 bits (233), Expect = 7.520e-19 Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query: 10 GQRYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNNPYIAVADKVRFLKVEVLEVMLYDCVTWTLSPGDFDKLREAHRGMLLRCINAYTSTRAAPDYHMLSYHGVVLRTDCECIEVAVMKRIFHYAGHVTRMHDDRLPNIVMRGEMVGGKRKRGQPAKCLEHRVTEYCTAFGIDPKCWMRATQDAPEW 609
GQR + VD F YLG +S + E+ R A F + K +++ I K++ + VL +L+ C TWT+ KL H L + + + PD +L +R D I + + +AGHV RM D+RLP +++ GE+ GKR +G K + + AF I+P W A QD +W
Sbjct: 708 GQRLNAVDKFTYLGSILSRSVVMDDELIARLAKANAAFGRLRKNVWDRRGIRQKTKIKVYRAAVLSTLLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKV-PDTEVL------VRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKW 900 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85220.16111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85220.16111.1 >prot_H-elongata_contig85220.16111.1 ID=prot_H-elongata_contig85220.16111.1|Name=mRNA_H-elongata_contig85220.16111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp EAVGQRYSQVDTFVYLGRTISSVGDVGPEIKRRTGYAWNCFLKYSKALYNback to top mRNA from alignment at H-elongata_contig85220:635..1249- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85220.16111.1 ID=mRNA_H-elongata_contig85220.16111.1|Name=mRNA_H-elongata_contig85220.16111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at H-elongata_contig85220:635..1249- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85220:635..1249- >mRNA_H-elongata_contig85220.16111.1 ID=mRNA_H-elongata_contig85220.16111.1|Name=mRNA_H-elongata_contig85220.16111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig85220:635..1249- (Himanthalia elongata Himel1 dioecious)back to top |