mRNA_H-elongata_contig8519.16108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8519.16108.1
Unique NamemRNA_H-elongata_contig8519.16108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.400e-33
Identity = 61/145 (42.07%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRG 513
            YK  W  AM +E+    ++ TF  +  LP+G KAIGS+WV S+K    G +   KAR V + F +  G+++  +S+ +P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G
Sbjct:   11 YKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQSG 155
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.430e-33
Identity = 65/148 (43.92%), Postives = 95/148 (64.19%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQAF  A+L  ++ ++ P GCG + GK V++++ALYGLKQ G  W
Sbjct:  201 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFPEGCGSMFGKAVKVERALYGLKQSGREW 348
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.010e-32
Identity = 65/148 (43.92%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++ ++S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:   27 YKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 174
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.390e-32
Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K +  G +   KAR V + F +  G+++  +S+  P+AAS+ T++ VA + G  + H +VKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:   27 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVIAVATEKGKMLAHWNVKQAYINAKLKEEIYLRFPEGCGSMSGKVVKVKRALYGLKQSGHEW 174
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.200e-32
Identity = 65/148 (43.92%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++ ++S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  469 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 616
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.270e-32
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  224 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 371
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5L029_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L029_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.350e-32
Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ T   +  LPE  KAIGS+W+ S+K+   G +   KAR V + F +  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQRG  W
Sbjct:  119 YKVFWQAAMKKEIDGHGKTGTLAKVKELPEERKAIGSKWLFSWKKNEKGLIVDFKARMVARGFSRIPGIHFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQRGREW 266
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.350e-32
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  370 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 517
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.580e-32
Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQ 507
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+T A+L  ++ ++ P GCG +SGK V++++ALYGL +
Sbjct:  119 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYTHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLSR 261
[Close]
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.310e-32
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:   79 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 522
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  511 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREW 658
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAZ3_9PHAE4.400e-3342.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9H4_9PHAE6.430e-3343.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE1.010e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE1.390e-3241.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE3.200e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE4.270e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L029_9PHAE5.350e-3241.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE5.350e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE5.580e-3243.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE7.310e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8519contigH-elongata_contig8519:2988..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.9
Seed ortholog evalue5.9e-22
Seed eggNOG ortholog4006.Lus10027499
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759,KOG1876@1,KOG1876@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.183249-UTR-H-elongata_contig8519:2987..29901622931255.183249-UTR-H-elongata_contig8519:2987..2990Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8519 2988..2990 +
1691679761.630681-UTR-H-elongata_contig8519:2987..29901691679761.630681-UTR-H-elongata_contig8519:2987..2990Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8519 2988..2990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.1969938-CDS-H-elongata_contig8519:2990..35121622931255.1969938-CDS-H-elongata_contig8519:2990..3512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8519 2991..3512 +
1691679761.6425297-CDS-H-elongata_contig8519:2990..35121691679761.6425297-CDS-H-elongata_contig8519:2990..3512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8519 2991..3512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8519.16108.1prot_H-elongata_contig8519.16108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8519 2991..3512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8519.16108.1

>prot_H-elongata_contig8519.16108.1 ID=prot_H-elongata_contig8519.16108.1|Name=mRNA_H-elongata_contig8519.16108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
MFSSVYYCYHIPAKVVRRDKRGGVSYKGAWFWAMNEELKGLKESSTFKVL
DGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTS
APTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCG
ELSGKYVELQKALYGLKQRGLLWN
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mRNA from alignment at H-elongata_contig8519:2988..3512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8519.16108.1 ID=mRNA_H-elongata_contig8519.16108.1|Name=mRNA_H-elongata_contig8519.16108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=525bp|location=Sequence derived from alignment at H-elongata_contig8519:2988..3512+ (Himanthalia elongata Himel1 dioecious)
ATAATGTTTAGTTCCGTGTATTATTGTTATCACATACCCGCGAAGGTAGT
GCGAAGGGACAAGAGAGGTGGAGTGAGCTACAAGGGAGCATGGTTTTGGG
CCATGAACGAAGAACTGAAGGGTCTAAAAGAGTCGAGTACTTTCAAGGTG
TTGGATGGACTGCCCGAGGGTGAAAAGGCTATTGGCTCACGATGGGTGTT
ATCATACAAGGAAGAGAGTGATGGAAACTTAAAGATTCCGAAGGCTAGAC
GTGTTGGTAAGGAATTTATGCAGAGGGAAGGTGTAAACTACCTCCAGACA
TCCGCACCCACACCTGCAGCAGCATCGGTGAAGACAATGCTTATTGTAGC
AAACAAAATGGGATTTACGGTGTACCACCTAGACGTCAAGCAAGCATTCA
CCCAGGCAGAGCTGGACTACAAGGTGTTGATGAAGCTTCCAGGCGGTTGT
GGTGAACTGTCTGGCAAGTACGTCGAACTACAGAAAGCGCTATACGGTCT
AAAGCAGCGGGGTCTACTTTGGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig8519:2988..3512+

>mRNA_H-elongata_contig8519.16108.1 ID=mRNA_H-elongata_contig8519.16108.1|Name=mRNA_H-elongata_contig8519.16108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig8519:2988..3512+ (Himanthalia elongata Himel1 dioecious)
ATGTTTAGTTCCGTGTATTATTGTTATCACATACCCGCGAAGGTAGTGCG
AAGGGACAAGAGAGGTGGAGTGAGCTACAAGGGAGCATGGTTTTGGGCCA
TGAACGAAGAACTGAAGGGTCTAAAAGAGTCGAGTACTTTCAAGGTGTTG
GATGGACTGCCCGAGGGTGAAAAGGCTATTGGCTCACGATGGGTGTTATC
ATACAAGGAAGAGAGTGATGGAAACTTAAAGATTCCGAAGGCTAGACGTG
TTGGTAAGGAATTTATGCAGAGGGAAGGTGTAAACTACCTCCAGACATCC
GCACCCACACCTGCAGCAGCATCGGTGAAGACAATGCTTATTGTAGCAAA
CAAAATGGGATTTACGGTGTACCACCTAGACGTCAAGCAAGCATTCACCC
AGGCAGAGCTGGACTACAAGGTGTTGATGAAGCTTCCAGGCGGTTGTGGT
GAACTGTCTGGCAAGTACGTCGAACTACAGAAAGCGCTATACGGTCTAAA
GCAGCGGGGTCTACTTTGGAACATGTTTAGTTCCGTGTATTATTGTTATC
ACATACCCGCGAAGGTAGTGCGAAGGGACAAGAGAGGTGGAGTGAGCTAC
AAGGGAGCATGGTTTTGGGCCATGAACGAAGAACTGAAGGGTCTAAAAGA
GTCGAGTACTTTCAAGGTGTTGGATGGACTGCCCGAGGGTGAAAAGGCTA
TTGGCTCACGATGGGTGTTATCATACAAGGAAGAGAGTGATGGAAACTTA
AAGATTCCGAAGGCTAGACGTGTTGGTAAGGAATTTATGCAGAGGGAAGG
TGTAAACTACCTCCAGACATCCGCACCCACACCTGCAGCAGCATCGGTGA
AGACAATGCTTATTGTAGCAAACAAAATGGGATTTACGGTGTACCACCTA
GACGTCAAGCAAGCATTCACCCAGGCAGAGCTGGACTACAAGGTGTTGAT
GAAGCTTCCAGGCGGTTGTGGTGAACTGTCTGGCAAGTACGTCGAACTAC
AGAAAGCGCTATACGGTCTAAAGCAGCGGGGTCTACTTTGGAAC
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