mRNA_H-elongata_contig85119.16104.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85119.16104.1
Unique NamemRNA_H-elongata_contig85119.16104.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85119.16104.1 vs. uniprot
Match: D8LCV7_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV7_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 8.480e-30
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:    1 GQGELGRRREALGALQRGLGAWRG--GSRPPGGFPTSXXXXXXXXXSRLEQQRETMREHERMLAELGQGVGRLKTQSTLINEETSLHVRLLDDMEGNAATAAAGLRNEAR 324
            GQGEL RRR AL  L R +GA RG  G          XXXXXXXX SRLEQQRETM+EH+RMLA+LG+GVGRLKTQS +INEETSLHVRLLDDMEG+A  A++GL  EAR
Sbjct:   11 GQGELARRRAALDTLHREVGAVRGSMGGXXXXXXXXXXXXXXXXXMSRLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEAR 120
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BLAST of mRNA_H-elongata_contig85119.16104.1 vs. uniprot
Match: A0A6H5KPB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.030e-29
Identity = 77/113 (68.14%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:    1 GQGELGRRREALGALQRGLGAWRGGSRPPGG-----FPTSXXXXXXXXXSRLEQQRETMREHERMLAELGQGVGRLKTQSTLINEETSLHVRLLDDMEGNAATAAAGLRNEAR 324
            G GEL RRR  L  L+R +GA RG   P GG         XXXXXXXX SRLEQQRETM+EH+RMLA+LG+GVGRLKTQS +INEETSLHVRLLDDMEG+A  A++GLR EAR
Sbjct:   58 GHGELARRRAELETLRREVGAVRG---PMGGGQXXXXXXXXXXXXXXXMSRLEQQRETMKEHDRMLADLGRGVGRLKTQSAMINEETSLHVRLLDDMEGDAERASSGLRTEAR 167
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BLAST of mRNA_H-elongata_contig85119.16104.1 vs. uniprot
Match: A0A835ZEW5_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.020e-11
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  136 RLEQQRETMREHERMLAELGQGVGRLKTQSTLINEETSLHVRLLDDMEGNAATAAAGLRNEAR 324
            RL +QRE M+EH+R++ ELG+GVGRL   S +IN+E +LHVRLLDDM+ +   A A L  E R
Sbjct:   87 RLAKQREAMQEHDRIVEELGKGVGRLHQTSVVINDEANLHVRLLDDMDEDIERANASLMQETR 149
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BLAST of mRNA_H-elongata_contig85119.16104.1 vs. uniprot
Match: A0A4D9D1R7_9STRA (t-SNARE coiled-coil homology domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1R7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.620e-8
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   70 GGSRPPGGFPTSXXXXXXXXXSRLEQQRETMREHERMLAELGQGVGRLKTQSTLINEETSLHVRLLDDMEGNAATAAAGLRNEAR 324
            GG   PGG  T             +Q+RE + E + +L +LG+GV RLK Q  +I +ET +H +LL+D++G+   AA+ LR EAR
Sbjct:  112 GGGGVPGGLRTL-----------AQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEAR 185
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BLAST of mRNA_H-elongata_contig85119.16104.1 vs. uniprot
Match: A0A024G688_9STRA (t-SNARE coiled-coil homology domain-containing protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G688_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.490e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  139 LEQQRETMREHERMLAELGQGVGRLKTQSTLINEETSLHVRLLDDMEGNAATAAAGLRNE 318
            L  Q++ MR+ +  L  +G+GV  LK  S  + +ET LH+RLLDDM+G+   A  GL  E
Sbjct:  110 LGLQKQIMRDQDDQLDIIGKGVANLKNFSMAVKDETDLHIRLLDDMDGDVLHAKDGLNTE 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85119.16104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCV7_ECTSI8.480e-3069.09Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A6H5KPB3_9PHAE6.030e-2968.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZEW5_9STRA2.020e-1155.56Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A4D9D1R7_9STRA4.620e-840.00t-SNARE coiled-coil homology domain-containing pro... [more]
A0A024G688_9STRA5.490e-543.33t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85119contigH-elongata_contig85119:2..2013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-07_007080.1
Exons3
Model size324
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85119.16104.1prot_H-elongata_contig85119.16104.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85119 2..2013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931254.8887997-CDS-H-elongata_contig85119:1..1591622931254.8887997-CDS-H-elongata_contig85119:1..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85119 2..159 -
1691679761.5133932-CDS-H-elongata_contig85119:1..1591691679761.5133932-CDS-H-elongata_contig85119:1..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85119 2..159 -
1622931254.9066155-CDS-H-elongata_contig85119:1014..11231622931254.9066155-CDS-H-elongata_contig85119:1014..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85119 1015..1123 -
1691679761.5222762-CDS-H-elongata_contig85119:1014..11231691679761.5222762-CDS-H-elongata_contig85119:1014..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85119 1015..1123 -
1622931254.929606-CDS-H-elongata_contig85119:1956..20131622931254.929606-CDS-H-elongata_contig85119:1956..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85119 1957..2013 -
1691679761.530575-CDS-H-elongata_contig85119:1956..20131691679761.530575-CDS-H-elongata_contig85119:1956..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85119 1957..2013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85119.16104.1

>prot_H-elongata_contig85119.16104.1 ID=prot_H-elongata_contig85119.16104.1|Name=mRNA_H-elongata_contig85119.16104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
GQGELGRRREALGALQRGLGAWRGGSRPPGGFPTSGGGGGKGGGSRLEQQ
RETMREHERMLAELGQGVGRLKTQSTLINEETSLHVRLLDDMEGNAATAA
AGLRNEAR
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mRNA from alignment at H-elongata_contig85119:2..2013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85119.16104.1 ID=mRNA_H-elongata_contig85119.16104.1|Name=mRNA_H-elongata_contig85119.16104.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2012bp|location=Sequence derived from alignment at H-elongata_contig85119:2..2013- (Himanthalia elongata Himel1 dioecious)
GGGCAGGGTGAGCTGGGTCGGAGAAGGGAGGCTCTGGGTGCGCTGCAACG
AGGCTTAGTGAGTATAATAATAGTTAAAGTAATAGCATACCCTGGTAAAA
TGGTTTATTATTAGTCTACTATGTACTCGCCACTATAGAGCTACCTTGTA
GTGATAGCAAAAAAAGTGTAGCAGTAACCACGTAGTCTATAATTAATCTG
TTCGGAAGTAATGAGTTCTCGATTCCTATCAGGCTTTTTTCTTATTGTCT
AGTATCTAGTATACTCGTACTTGGTATATAAATAAAATCATATTCATATC
TGGTGTTAATAGCGGGAAACTGCACAAGCAGAGTAATGGTGGACACTATC
ATAGCAGACAAAAGTCACTCTCAATCACGTTAGTATTTGGCTGAGAAGGT
GTCGGAATAACGACTGATGTGTAATAACAACGTGGATCTCGATTTTTTTT
TTGTAATGTAGGTAGGCGTTAACCAACCGGGGAGAGATAGATGGGTTGAT
CGACCCATTGGAGGTCATACAGGCGAGATGGGCCTTGTTGCGGGTGGGTG
GGGTCGATAATCTATCATGCAAAGTGGACTATACTATTATAATACTGTAA
TACTGTACTGTAGCAAACATAAGGAGGCGTGAACCATCGGCAGGGCGAAA
GACTAACGAATATTATACATTTAGAGAGAGAGAAATAATATAGAATAATA
GGGAGGTGAGTGAAATGCATTCCACTGACTGTACATGTAGGATGGACGAG
GCGATTTGCCGTGTGCCGAGATACTCTGTTACAGTGTACATTGGTACACT
AATAATTAAAAATATATTTTCTCCCACCCCCTTTTCACCCCCCTTTGCCT
CTTATATATATATATATATCTCTCTTTATCTCTGCTCAAGGGCGCTTGGA
GAGGAGGCTCGAGACCCCCAGGAGGTTTTCCAACCTCAGGAGGCGGGGGT
GGTAAAGGGGGAGGTTCCCGTCTGGAACAACAACGAGAAACGATGAGAGG
TGACATCACCAGAGAGGGTTTAAAAGTCAAGTATCTACCTTAGCAGAGTG
TGTATCTGCGGTTCCCGGGACATTCTCGGGATAAAAAAAAACAGAGCGCC
ATCAATTTATTATCTTGAAATATCATAAACATTCTTGACACCACCCTCCT
CCTCTTACATCTTCAAGCCCTCTCTAAGAACGCCCCCTATTTGTGTCTTT
TTCTAATATGGGAATGTAATAACGAAAAACATTAGAGAGTTAAGAAATAG
TTTCTGTAAATATTGCGAGAGAGAGTTCAATGAGGGGGGAAACATTTTCT
TTACCATCTCTATATTCCTCTCGGGGACACGGGGGGGGAAGCGTAGCATG
TTTGCGGCCTATCATATATCTTATCGGTTTTGGGGGGGGTTTTAAGCCCG
CGGAGATTCACAGCTGAAAACCTAGAAAACCCCGATAAGGCCGGTCGTAA
AAAAAAGGAAACGGAAACGGAAATTAAAAAATATATATGTTTTTCTTTCT
TGGAAGTATGAGCTCATGCCAACCCTCCGAACATCCACGCCTTCTTAGCA
TCGTGAAGGGTGCAGTCCAGAGGACGAACTATCGTCAGGTTGGAATGTGT
ACACTATACCTTTGATATTTTAATATAATTTAGTAAAAGTAGTACAGTAG
TAGTGTATTAGTAGTAATAATATTAGACGGTATTAAGTATTAACCCTTAT
GGAACTCGATCTGTTTTTTATATACTAAGTTCAATATAAAACTTAAAGTC
CTGTTCCAAAAGGGTCATTAGTATGAATGATCCTAACTGTAGCCAAAGCG
CCTATCGATCACTCCTTGACCTTTTCGCATCTCCGTCGTGTTGCCTCGCG
GCAGAGCACGAGCGCATGCTCGCGGAGCTCGGCCAAGGTGTGGGGCGGTT
GAAGACGCAGTCGACGCTCATTAACGAGGAGACGTCGCTGCACGTGAGGC
TCTTGGACGACATGGAGGGCAATGCGGCGACGGCGGCAGCAGGGCTGAGA
AACGAGGCGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig85119:2..2013-

>mRNA_H-elongata_contig85119.16104.1 ID=mRNA_H-elongata_contig85119.16104.1|Name=mRNA_H-elongata_contig85119.16104.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig85119:2..2013- (Himanthalia elongata Himel1 dioecious)
GGGCAGGGTGAGCTGGGTCGGAGAAGGGAGGCTCTGGGTGCGCTGCAACG
AGGCTTAGGGCAGGGTGAGCTGGGTCGGAGAAGGGAGGCTCTGGGTGCGC
TGCAACGAGGCTTAGGCGCTTGGAGAGGAGGCTCGAGACCCCCAGGAGGT
TTTCCAACCTCAGGAGGCGGGGGTGGTAAAGGGGGAGGTTCCCGTCTGGA
ACAACAACGAGAAACGATGAGAGGGCGCTTGGAGAGGAGGCTCGAGACCC
CCAGGAGGTTTTCCAACCTCAGGAGGCGGGGGTGGTAAAGGGGGAGGTTC
CCGTCTGGAACAACAACGAGAAACGATGAGAGAGCACGAGCGCATGCTCG
CGGAGCTCGGCCAAGGTGTGGGGCGGTTGAAGACGCAGTCGACGCTCATT
AACGAGGAGACGTCGCTGCACGTGAGGCTCTTGGACGACATGGAGGGCAA
TGCGGCGACGGCGGCAGCAGGGCTGAGAAACGAGGCGCGGAGCACGAGCG
CATGCTCGCGGAGCTCGGCCAAGGTGTGGGGCGGTTGAAGACGCAGTCGA
CGCTCATTAACGAGGAGACGTCGCTGCACGTGAGGCTCTTGGACGACATG
GAGGGCAATGCGGCGACGGCGGCAGCAGGGCTGAGAAACGAGGCGCGG
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