mRNA_H-elongata_contig85083.16101.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85083.16101.1
Unique NamemRNA_H-elongata_contig85083.16101.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 3.400e-91
Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGNMVE 447
            YACVNLSCFVLSILQSPGFRP+WKHYNW TALSGF LCLAIMLVVSW+ AVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYK+VHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEG+MVE
Sbjct:  474 YACVNLSCFVLSILQSPGFRPKWKHYNWLTALSGFILCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGDMVE 622          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: D7FM44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM44_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 7.790e-85
Identity = 143/194 (73.71%), Postives = 146/194 (75.26%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSW---------------------------------------------KAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGNMVE 447
            YACVNLSCFVLSILQSPGFRP+WKHYNW TALSGF LCLAIMLVVSW                                             K AVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYK+VHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEG+MVE
Sbjct:  235 YACVNLSCFVLSILQSPGFRPKWKHYNWLTALSGFILCLAIMLVVSWRRPGLHDGFRLAILGLGVVACDTGGWHLCRREEGGDRQKAKSLQMKVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGDMVE 428          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.770e-61
Identity = 103/147 (70.07%), Postives = 125/147 (85.03%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKE-VHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGN 438
            YA VNLSC+VL +LQSPGFRP+W++Y W+TAL G A+C+A+ML++SW+AAV  I  A ALLFYIKYQNATRDWGDTL GFR+Q+ARD+LLSLS K+ +H KNWRPQ+LV C ID  GNP VP LLSLAGQMK GRGLLM+V L++G+
Sbjct:  450 YASVNLSCYVLCVLQSPGFRPQWRYYAWWTALGGVAMCVALMLMISWEAAVVLITAAFALLFYIKYQNATRDWGDTLTGFRYQVARDVLLSLSEKQTMHAKNWRPQVLVLCAIDEGGNPLVPELLSLAGQMKKGRGLLMAVALIKGD 596          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A835Z753_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z753_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.540e-58
Identity = 95/147 (64.63%), Postives = 122/147 (82.99%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLS-YKEVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGN 438
            Y  VNLSC+VL +L+SPGFRP+W++Y+W TAL+G  +C+ +ML++SW+AAV S  +A ALLFYIKYQNATRDWGD+L GFR+Q+ARDMLLSL  ++ +H KNWRPQ+LV C ID  GNPTVP LL+LA QMK GRGLLM+  L++G+
Sbjct:  347 YGSVNLSCYVLCVLKSPGFRPQWRYYSWGTALAGVVMCMLLMLIISWQAAVLSSIMAFALLFYIKYQNATRDWGDSLTGFRYQVARDMLLSLKGHQTMHAKNWRPQILVLCNIDDGGNPTVPELLALAAQMKKGRGLLMAAALIKGD 493          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A7S3JVD0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVD0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.200e-39
Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEV--HPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLE 432
            YA VNL+CF L+ L+SPGFRP WK+++W +AL GF  CL +M  +SW  A+ ++ +A ++  Y++ +   +DWGD++ G RFQ+ARD L++LS +    H KNWRPQLLV  K+D   NP  P LL +A  +K G+GLLM+  L++
Sbjct:   47 YATVNLACFFLAYLKSPGFRPTWKYFHWSSALLGFVWCLGLMFAISWYLALVALVIAASVAAYVRKEGVNKDWGDSVAGLRFQIARDQLIALSERSTFYHAKNWRPQLLVMVKLDYKFNPERPELLEIAASLKKGQGLLMAHALID 192          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A7R9YE43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE43_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.050e-38
Identity = 68/147 (46.26%), Postives = 103/147 (70.07%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSL-SYKEVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGN 438
            YA VN SCFVLSIL++PG+RP +++Y+W TAL+G   C+ +ML++SW  A+  + +   LL YI+ Q+A R+WGD   GFR  + RD +L+L S  E+H KNWRPQ+++   ++ YG+P+ P ++  AGQ+K GRGL++    L G+
Sbjct:  455 YAAVNFSCFVLSILKAPGWRPTFRYYHWGTALAGTIWCVVLMLIISWWVAIIVMAVGAMLLLYIRTQDAKRNWGDAARGFRLSIVRDQMLALDSRSEMHAKNWRPQIMLVADVNEYGHPSRPEIIRFAGQLKKGRGLILVNAFLAGD 601          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A8J2SMD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMD4_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.820e-37
Identity = 67/146 (45.89%), Postives = 98/146 (67.12%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEV--HPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLE 432
            YA +N+SCF ++ L +PGFRP W+ ++W +AL G  LCL +M  +SW  ++ ++     + FY++ +  + DWGD   GFRFQ+ARD LL+L+ +    H KNWRPQ+LV C+ D   NP  P LL+LAG +K GRGLLM+  L++
Sbjct:  591 YATINVSCFAVAFLGTPGFRPTWRCFHWSSALLGCLLCLGLMFAISWLYSLVALAFGAGVGFYVRSRRVSTDWGDAGAGFRFQVARDQLLALTERSTFHHAKNWRPQILVLCRCDGRFNPVKPELLALAGLLKKGRGLLMAHALID 736          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A6P8I0B0_ACTTE (solute carrier family 12 member 6-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I0B0_ACTTE)

HSP 1 Score: 137 bits (346), Expect = 8.960e-35
Identity = 65/146 (44.52%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGN 438
            YA VNL+C V S+L++P +RPR+K+Y+WFT+  G  LC+A+M + SW  A+ ++ +A A+  YI++Q A ++WGD + G     AR  L+ L     H KNWRP++L+ CK++    P  P LLSLA Q+K GRGL +   +LEG+
Sbjct:  558 YAFVNLACVVQSLLKTPNWRPRFKYYHWFTSFLGVCLCVALMFISSWYYALVAMIIAAAVYKYIEFQGAKKEWGDGIRGLNLSAARYSLMRLEEGPTHTKNWRPEILILCKLNEGYQPQSPRLLSLASQLKKGRGLSVVGSVLEGS 703          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A087TPI8_STEMI (Solute carrier family 12 member 4 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TPI8_STEMI)

HSP 1 Score: 125 bits (315), Expect = 5.060e-34
Identity = 61/145 (42.07%), Postives = 90/145 (62.07%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEG 435
            Y  VNL+C + S+L +P +RPR+K+Y+W  +++G  LCL +M + SW  A+ +I +A  +  YI+Y  A ++WGD + G     AR  LL L     H KNWRPQ+L+ CK+D   NP  P + S A Q+K G+GL +   +LEG
Sbjct:    3 YMFVNLACALQSLLHTPNWRPRFKYYHWSLSMAGSILCLVVMFLSSWYYALIAIAIAGCVYKYIEYCGAEKEWGDGIRGLALSAARYSLLRLEEGPPHTKNWRPQVLILCKLDEELNPKYPRMFSFASQLKAGKGLTIVCSVLEG 147          
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Match: A0A6S7H269_PARCT (Solute carrier family 12 member 4 isoform X3 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7H269_PARCT)

HSP 1 Score: 135 bits (340), Expect = 5.730e-34
Identity = 65/149 (43.62%), Postives = 95/149 (63.76%), Query Frame = 1
Query:    1 YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGNMVE 447
            Y  VNL+C + S+LQ+P +RPR++ Y+WF +L G  LCL +M V SW  A+ ++ LA  +  YI++Q A ++WGD + G     AR  LL L    VH KNWRPQLLV CK++    P    L +  GQ+K GRGL ++  +L+G+++E
Sbjct:  548 YGFVNLACVLQSLLQTPNWRPRFQFYHWFASLIGLCLCLTLMFVSSWYYALVALILAAGIYKYIEFQGAKKEWGDGIRGLALSAARYGLLRLEEGAVHTKNWRPQLLVLCKLNEDLKPKTDNLFAFVGQLKAGRGLTIAASVLKGDILE 696          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85083.16101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z6_9PHAE3.400e-9195.30Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FM44_ECTSI7.790e-8573.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z2U9_9STRA2.770e-6170.07Amino acid permease-domain-containing protein n=1 ... [more]
A0A835Z753_9STRA2.540e-5864.63Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S3JVD0_9STRA1.200e-3947.26Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9YE43_9STRA2.050e-3846.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J2SMD4_9STRA1.820e-3745.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6P8I0B0_ACTTE8.960e-3544.52solute carrier family 12 member 6-like n=1 Tax=Act... [more]
A0A087TPI8_STEMI5.060e-3442.07Solute carrier family 12 member 4 (Fragment) n=1 T... [more]
A0A6S7H269_PARCT5.730e-3443.62Solute carrier family 12 member 4 isoform X3 n=2 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85083contigH-elongata_contig85083:182..2614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.4
Seed ortholog evalue1.6e-71
Seed eggNOG ortholog2880.D7FM44
KEGG koko:K14427
KEGG TC2.A.30.5
EggNOG free text desc.potassium:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2082@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons4
Model size456
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85083.16101.1prot_H-elongata_contig85083.16101.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85083 182..2614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931254.1479127-CDS-H-elongata_contig85083:181..3221622931254.1479127-CDS-H-elongata_contig85083:181..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 182..322 -
1691679761.321308-CDS-H-elongata_contig85083:181..3221691679761.321308-CDS-H-elongata_contig85083:181..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 182..322 -
1622931254.1674788-CDS-H-elongata_contig85083:900..9731622931254.1674788-CDS-H-elongata_contig85083:900..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 901..973 -
1691679761.333622-CDS-H-elongata_contig85083:900..9731691679761.333622-CDS-H-elongata_contig85083:900..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 901..973 -
1622931254.187594-CDS-H-elongata_contig85083:1766..18641622931254.187594-CDS-H-elongata_contig85083:1766..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 1767..1864 -
1691679761.3444057-CDS-H-elongata_contig85083:1766..18641691679761.3444057-CDS-H-elongata_contig85083:1766..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 1767..1864 -
1622931254.209092-CDS-H-elongata_contig85083:2470..26141622931254.209092-CDS-H-elongata_contig85083:2470..2614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 2471..2614 -
1691679761.3522568-CDS-H-elongata_contig85083:2470..26141691679761.3522568-CDS-H-elongata_contig85083:2470..2614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85083 2471..2614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85083.16101.1

>prot_H-elongata_contig85083.16101.1 ID=prot_H-elongata_contig85083.16101.1|Name=mRNA_H-elongata_contig85083.16101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
YACVNLSCFVLSILQSPGFRPRWKHYNWFTALSGFALCLAIMLVVSWKAA
VSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKEVHPK
NWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGNMVEV
GV
back to top

mRNA from alignment at H-elongata_contig85083:182..2614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85083.16101.1 ID=mRNA_H-elongata_contig85083.16101.1|Name=mRNA_H-elongata_contig85083.16101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2433bp|location=Sequence derived from alignment at H-elongata_contig85083:182..2614- (Himanthalia elongata Himel1 dioecious)
TACGCGTGCGTAAACCTCAGCTGCTTCGTGCTAAGCATTCTGCAGAGTCC CGGCTTCCGTCCACGCTGGAAGCACTACAACTGGTTTACGGCGCTCTCCG GATTCGCGCTCTGCCTGGCCATTATGCTGGTCGTTAGCTGGAAGGTGGGC GCAATAATATACAGATACGGATACGATCTTGTGCGGCGCGGTGTAATATG ATGTTCTCGCATCTTCTACCCACGGCGCGTCTATTTGACGAATCGCGGTC GAGCCCGTCGCCTCCCCCTTTTGGTACCCAGACACAAGCGATCAAATGAC TCTGTTGCCCACAACCCCGTATCGCCGTGCGCGCGCTAAGCCCGTTTCTG TTTGGTATTCCGTCGCATGTTTTAAGAATCGAAAGATACTTTGGCTGGTT CTCCCGTCTACTATAGTGGTAATAGGAATGAAGTAGGATGTAGTACCGTA GTATCTTTTAATGCTGCTGTTTTTTCTCACAAACCTCGTTCGGCATCTCT TCAGCTGTTGAGGCTTCGAACGTCATCGTTAGTTGAAAAGGTCTCTCCTT TTTGCCTCCGCCAATTCGTGGCGCGGGCAAGAATGACCATCGGGTCCGCG TTCGAAACAAACGCCTGGAACACGAGGAGTGACGTTCGTCGCAAGCTCTA TGAATATTTTGCCGCTTCTCATGATACCGCTGTGTTCTTACTTCACCATT CCCCCTTCCCCTCCGATACACGCATGCTCACCCAAAACGGAAACCCCAAG GCTGCAGTGAGCTCCATCTTCTTGGCTTGCGCACTGCTGTTCTACATCAA GTATCAAAACGCAACTCGAGACTGGGGAGACACCTTGGTCGGCTTCAGGT GAATGAAATCAAGTGTGTTTTGTGCGCGTGCGCATTTGTTTATGTGTGTT TGCTTTTTAAGCGGCTTTTACATCGCGCAATTCAGTCTCTTTTGATCTGT GCAAAGTTTTTATATGATTGCTCATTCCTAAAAAAGAGGCGTTATTGCTG AGTCGTTCGGTTGCGGTAGGTGAAGGCAGCGAGTGTTAGATTTCGAGCAG GGTCTGCGCTATCTGCGCATTGTTATATTTGTTGTTTTTGCATTATGCCG AATGGGCATCAATCCCAACCCCGCTTGTGGCACGCTAAACAGGAAAAAAA TGAAGGAAATACCCAAAACAAAACGGAAAACCCCACACCCTAAAAAACAA AGAAACATCACCAAGCGTACACGCAAAGTATGCTTCGTGGAGACATAACT ATAACCGACAAGGGTCATCAACCGATCGCGCTCAAATTAAAAAACAGATA GTAGTACAGTGGGCATCGAAACTCTTAACACTAACCCAACCGTCAGCATC GTATGTTGGGACTACTGTGCATTGCCAGATCACCCTTAATAGTCACCCTT AATAGGCTAACACGGGTGAAACGATACAAATTTACAAAAAAAGAGGTCCC TGACTCTACCCCAAGAAGCGTCGCCCAAATCGTTATATCATTATTTGAGT CAACAATTTCAAGTACTGCAAGATCATATTTCCCAATGCGTCACGCATCA CCGCTCTAGCCCTGGTCGCTCGCTGCAACACGCCTCCACCCCTTCCTCTA ACTCCTTTCCAAACTACGATTCGCAATCGAACGGTCATCAGGTTCCAGCT CGCGCGTGACATGCTGCTGTCCCTGTCTTACAAGGAGGTGCACCCTAAAA ATTGGCGGCCTCAGGTAAAGGAAGGAATACTGTTGATAGGACAAGCTTCT CGCTTCAGAACCCCCTCCCAAACACGCACACACCTGGAGGCATGGAGGTT TGTGAAGGAGATAAGGGTTTAGTCGATGAAGAGGCCTTTGATCGTGACCG GGGACATGTGCTGTATACGCCGGGGGGCATCGTTTTTGTTCTTCGCGGCA AGGCAGCAGCTGCTGGGGGGGGGGTTATGTTGTTAACAACTTTTGTATAA TATAGAGAGCATAATATCACATGTTATTTTGTACATTAGCGCTGTATACA CTACAGTAAGAAGCGCCCTTCCTCCTTCATCCCACGCCACCTCGGTGATA GTTCGGCTTAAGTTGTTTTCCTCAGAGAGAAGCCTCTCCCTCCTGTGCAC CAACTGTACATGCGCGCTGCTGTTCCTCCATATCCCCCCTCCCACCCGCG CCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNCTCAAGGAAACGC CCCCCCCCCCCGGCCCCCCCCGGTAAATCCCCGCTCTTTTCCCCCCTTAC CCCCCCCCCCCCCCCCTTCACCACCCCCTCATTCTCTATCAGCTTCTCGT GTTCTGCAAGATCGACGCCTACGGCAACCCCACTGTACCGGGTCTTTTGT CGCTGGCGGGTCAAATGAAGATGGGTAGGGGTCTGCTCATGTCCGTTGGG CTGCTGGAGGGAAACATGGTTGAGGTCGGTGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig85083:182..2614-

>mRNA_H-elongata_contig85083.16101.1 ID=mRNA_H-elongata_contig85083.16101.1|Name=mRNA_H-elongata_contig85083.16101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig85083:182..2614- (Himanthalia elongata Himel1 dioecious)
TACGCGTGCGTAAACCTCAGCTGCTTCGTGCTAAGCATTCTGCAGAGTCC
CGGCTTCCGTCCACGCTGGAAGCACTACAACTGGTTTACGGCGCTCTCCG
GATTCGCGCTCTGCCTGGCCATTATGCTGGTCGTTAGCTGGAAGTACGCG
TGCGTAAACCTCAGCTGCTTCGTGCTAAGCATTCTGCAGAGTCCCGGCTT
CCGTCCACGCTGGAAGCACTACAACTGGTTTACGGCGCTCTCCGGATTCG
CGCTCTGCCTGGCCATTATGCTGGTCGTTAGCTGGAAGGCTGCAGTGAGC
TCCATCTTCTTGGCTTGCGCACTGCTGTTCTACATCAAGTATCAAAACGC
AACTCGAGACTGGGGAGACACCTTGGTCGGCTTCAGGCTGCAGTGAGCTC
CATCTTCTTGGCTTGCGCACTGCTGTTCTACATCAAGTATCAAAACGCAA
CTCGAGACTGGGGAGACACCTTGGTCGGCTTCAGGTTCCAGCTCGCGCGT
GACATGCTGCTGTCCCTGTCTTACAAGGAGGTGCACCCTAAAAATTGGCG
GCCTCAGGTTCCAGCTCGCGCGTGACATGCTGCTGTCCCTGTCTTACAAG
GAGGTGCACCCTAAAAATTGGCGGCCTCAGCTTCTCGTGTTCTGCAAGAT
CGACGCCTACGGCAACCCCACTGTACCGGGTCTTTTGTCGCTGGCGGGTC
AAATGAAGATGGGTAGGGGTCTGCTCATGTCCGTTGGGCTGCTGGAGGGA
AACATGGTTGAGGTCGGTGTGCTTCTCGTGTTCTGCAAGATCGACGCCTA
CGGCAACCCCACTGTACCGGGTCTTTTGTCGCTGGCGGGTCAAATGAAGA
TGGGTAGGGGTCTGCTCATGTCCGTTGGGCTGCTGGAGGGAAACATGGTT
GAGGTCGGTGTG
back to top