mRNA_H-elongata_contig8499.16096.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8499.16096.1
Unique NamemRNA_H-elongata_contig8499.16096.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 3.320e-53
Identity = 110/324 (33.95%), Postives = 176/324 (54.32%), Query Frame = 1
Query:    4 VVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYS-GQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKHAKVI 972
            +V ++VDDIL +   ++  +  VA L      KN+G+ R+++ C   R  +   ++I Q  Y+ S++E F+V + S IPA+      S  E+      E     P+RE VG+L+W A  TRPDI  A+R+VVR    P  +H KA   ++ YLL T    + +    +      VY D+DF +  + RR VSGA++++    ++W S  Q+  +   SE  Y A+ +  K+ LFV  M + F+ PS     ++V EDNE  I LA N  +S R+K+I+V+HH +R+ ++E  + V +V SE+QH D+L K +    F  H   +
Sbjct:    9 MVAIHVDDIL-YTGTKSLAEVVVAALADSLPTKNLGEVRFFLGCAFVRDREAGTIEISQESYIRSVLERFNVCRTSSIPASPTNDYRSVMED------EGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQ-FLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 324          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.240e-52
Identity = 113/320 (35.31%), Postives = 179/320 (55.94%), Query Frame = 1
Query:    4 VVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYS-GQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKH 960
            +V ++VDDIL +   ++  +  VA LG     KN+G+ R+++ C   R  +   +++ Q  Y+ S++E F+V + S IPA+      S  E+      E     P+RE VG+L+W A  TRPDI  AVR+V R    P  +H KA   ++ YLL T    + +    +      VY D+DF +  + RR VSGA++++    ++W S  Q+  +  TSE  Y+A+ +  KE LFV  M + F+ PS +   ++V EDNEG I LA N  +S R+K+I+V+HH +R+ ++E  + V +V SE+QH D+L K +    F  H
Sbjct:  640 MVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMED------EGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQ-FLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 951          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 3.450e-52
Identity = 113/320 (35.31%), Postives = 179/320 (55.94%), Query Frame = 1
Query:    4 VVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYS-GQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKH 960
            +V ++VDDIL +   ++  +  VA LG     KN+G+ R+++ C   R  +   +++ Q  Y+ S++E F+V + S IPA+      S  E+      E     P+RE VG+L+W A  TRPDI  AVR+V R    P  +H KA   ++ YLL T    + +    +      VY D+DF +  + RR VSGA++++    ++W S  Q+  +  TSE  Y+A+ +  KE LFV  M + F+ PS +   ++V EDNEG I LA N  +S R+K+I+V+HH +R+ ++E  + V +V SE+QH D+L K +    F  H
Sbjct:  907 MVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMED------EGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQ-FLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 1218          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 4.100e-52
Identity = 109/324 (33.64%), Postives = 177/324 (54.63%), Query Frame = 1
Query:    4 VVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYSGQTC-GLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKHAKVI 972
            +  ++VDDIL +   +   +  V  LG     KN+G+ R+++ C I+R  +   ++I Q  Y+ +++E F++ + S IPA+    + S  E+      EE    P+RE VG L+W A  TRP+   AVR+V R    P  +  KA   ++ YL  T    + Y   T   +   VY D+DF +    RR VSGA++++    + W+S  Q+  +  TSE  Y+A+ +  KE  FV  M + F+ PS +   ++VFEDNEG I LA N  +S R+K+I+V+HH +R+ ++E  + V +V S++QH D+L K +    F  H   +
Sbjct:   65 IFAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPASPANDSRSVMED------EEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQ-FLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFV 380          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.120e-51
Identity = 112/320 (35.00%), Postives = 180/320 (56.25%), Query Frame = 1
Query:    4 VVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYS-GQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKH 960
            +V ++VDDIL +   ++  +  VA LG     KN+G+ ++++ C   R  K   ++I Q  Y+ S++E F++ + S IPA+      S  EE      E     P+RE VG+L+W A+ TR DI  AVR+V R    P  +H KA   ++ YLL T    + +    +  +   VY D+DF +    RR VSGA++ +    ++W S  Q+  +  TSE+ Y+A+ +  KE LFV  M + F+ PS++   ++V EDNEG I LA N  +S R+K+I+V+HH +R+ ++E  + V +V S++QH D+L K +    F  H
Sbjct:  871 MVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEE------EGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQ-FLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVH 1182          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 3.040e-51
Identity = 112/320 (35.00%), Postives = 179/320 (55.94%), Query Frame = 1
Query:    4 VVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYS-GQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKH 960
            +V ++VDDIL +   ++  +  VA LG     KN+G+ ++++ C   R  K   ++I Q  Y+ S++E F++ + S IPA+      S  EE      E     P+RE VG+L+W A+ TR DI  AVR+V R    P  +H KA   ++ YLL T    + +    +  +   VY D+DF +    RR VSGA++ +    ++W S  Q+  +  TSE  Y+A+ +  KE LFV  M + F+ PS++   ++V EDNEG I LA N  +S R+K+I+V+HH +R+ ++E  + V +V S++QH D+L K +    F  H
Sbjct: 1081 MVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEE------EGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQ-FLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVH 1392          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.280e-49
Identity = 108/317 (34.07%), Postives = 175/317 (55.21%), Query Frame = 1
Query:    4 VVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYSGQTC-GLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKF 951
            ++ ++VDDIL +   +   +  V  LG     KN+G+ R+++ C  +R  +   ++I Q  Y+ S++E F++ + S IPA+    + S  E+      EE    P+RE VG L+W A  TRP+   AVR+V R    P  +  KA   ++ YL  T    + Y   T   +   VY D+DF +    RR VSGA++++    + W+S  Q+  +  TSE  Y+A+ +  KE LFV  M +  + PS +   ++VFEDNEG I LA N  +S R+K+I+V+HH +R+ ++E  + V +V S++QH D+L K +    F
Sbjct:  405 IIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMED------EEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQ-LLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.430e-48
Identity = 113/322 (35.09%), Postives = 172/322 (53.42%), Query Frame = 1
Query:    1 MVVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYSGQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKHAK 966
            M++V+ VDDIL    D+   +  +A L +KF  KN+G+ +++  C I R  +   L+I Q  Y++SMVE FDVK  S+IPAT G     K E+      EE  ++P RE +G+++W +T +RPD+  AVR+V R    P   H  A+  ++ YL  T D  I+Y  +  GL + VY D+ +    D RR VSG    +    +   S  Q + +  ++E  Y+A  E  KE LFV  +   FV P     ++ V EDN+G I L  N  +S RTK+I+V++H +R       + V +V + +QH DLL K +       H +
Sbjct:  928 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLS-FVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRR 1239          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.630e-48
Identity = 113/322 (35.09%), Postives = 172/322 (53.42%), Query Frame = 1
Query:    1 MVVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYSGQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKHAK 966
            M++V+ VDDIL    D+   +  +A L +KF  KN+G+ +++  C I R  +   L+I Q  Y++SMVE FDVK  S+IPAT G     K E+      EE  ++P RE +G+++W +T +RPD+  AVR+V R    P   H  A+  ++ YL  T D  I+Y  +  GL + VY D+ +    D RR VSG    +    +   S  Q + +  ++E  Y+A  E  KE LFV  +   FV P     ++ V EDN+G I L  N  +S RTK+I+V++H +R       + V +V + +QH DLL K +       H +
Sbjct: 1307 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLS-FVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRR 1618          
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.690e-48
Identity = 113/322 (35.09%), Postives = 172/322 (53.42%), Query Frame = 1
Query:    1 MVVVVNVDDILAHDKDQATMDRFVAKLGQKFKLKNMGDSRYYMDCYITR*HKTCELKIDQHLYVESMVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIWTATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYSGQTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASDTSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLATNKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQKFYKHAK 966
            M++V+ VDDIL    D+   +  +A L +KF  KN+G+ +++  C I R  +   L+I Q  Y++SMVE FDVK  S+IPAT G     K E+      EE  ++P RE +G+++W +T +RPD+  AVR+V R    P   H  A+  ++ YL  T D  I+Y  +  GL + VY D+ +    D RR VSG    +    +   S  Q + +  ++E  Y+A  E  KE LFV  +   FV P     ++ V EDN+G I L  N  +S RTK+I+V++H +R       + V +V + +QH DLL K +       H +
Sbjct: 1470 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLS-FVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRR 1781          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8499.16096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBM6_9PHAE3.320e-5333.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE2.240e-5235.31Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE3.450e-5235.31Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRE7_9PHAE4.100e-5233.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I1_9PHAE2.120e-5135.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.040e-5135.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE2.280e-4934.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE3.430e-4835.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.630e-4835.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.690e-4835.09Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8499contigH-elongata_contig8499:3156..4127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size972
Cds size774
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.4056778-UTR-H-elongata_contig8499:3155..33531622931253.4056778-UTR-H-elongata_contig8499:3155..3353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8499 3156..3353 +
1691679761.0551047-UTR-H-elongata_contig8499:3155..33531691679761.0551047-UTR-H-elongata_contig8499:3155..3353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8499 3156..3353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.4203587-CDS-H-elongata_contig8499:3353..41271622931253.4203587-CDS-H-elongata_contig8499:3353..4127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8499 3354..4127 +
1691679761.0735135-CDS-H-elongata_contig8499:3353..41271691679761.0735135-CDS-H-elongata_contig8499:3353..4127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8499 3354..4127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8499.16096.1prot_H-elongata_contig8499.16096.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8499 3354..4127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8499.16096.1

>prot_H-elongata_contig8499.16096.1 ID=prot_H-elongata_contig8499.16096.1|Name=mRNA_H-elongata_contig8499.16096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
MVETFDVKKASKIPATSGVPTLSKAEEPRNPEKEEMRKFPYREEVGALIW
TATMTRPDIVGAVRSVVRFYKNPGPAHKKAVINLIQYLLRTMDWEISYSG
QTCGLCMEVYTDSDFGTCLDTRRPVSGAVLMLPKKAIIWYSMMQEVAASD
TSETVYVALSEAEKEVLFVLDMFEEFVEPSIRIGAVNVFEDNEGGIKLAT
NKHASPRTKYINVKHHMVRDTSDEQKVRVAYVISEDQHVDLLIKPVGTQK
FYKHAKVI
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mRNA from alignment at H-elongata_contig8499:3156..4127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8499.16096.1 ID=mRNA_H-elongata_contig8499.16096.1|Name=mRNA_H-elongata_contig8499.16096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig8499:3156..4127+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGTGGTTGTAAACGTGGATGACATTCTTGCCCACGACAAAGACCA AGCAACGATGGATAGATTCGTGGCTAAGCTTGGACAGAAGTTCAAATTGA AGAACATGGGCGACTCCAGGTACTACATGGACTGTTACATCACGAGGTAG CACAAGACGTGCGAGTTGAAGATCGATCAACATTTGTACGTGGAGTCGAT GGTGGAAACGTTCGACGTCAAGAAGGCAAGCAAGATACCGGCTACGTCAG GGGTACCAACACTCTCAAAGGCGGAAGAACCGCGGAACCCGGAGAAGGAA GAAATGAGGAAGTTTCCATACCGGGAGGAAGTAGGGGCGCTTATATGGAC GGCGACGATGACACGGCCGGACATTGTAGGCGCAGTACGCTCTGTGGTCA GGTTCTACAAAAATCCTGGGCCGGCGCATAAGAAGGCAGTGATAAATTTG ATTCAGTATCTCCTTCGCACAATGGATTGGGAGATTTCATACAGTGGACA GACCTGTGGACTTTGCATGGAGGTATACACGGACTCGGACTTCGGAACCT GCCTGGATACGAGACGGCCGGTGTCGGGTGCGGTGTTGATGCTGCCGAAA AAAGCGATCATCTGGTACTCAATGATGCAAGAAGTGGCAGCATCGGATAC CTCGGAAACAGTGTACGTTGCTTTATCAGAGGCGGAAAAGGAGGTTCTAT TTGTTTTAGATATGTTTGAGGAGTTCGTGGAACCGTCGATAAGGATCGGT GCAGTGAATGTGTTCGAAGACAATGAGGGGGGCATCAAGCTGGCCACAAA CAAACATGCGAGTCCTAGGACAAAGTACATTAATGTGAAGCATCATATGG TGAGGGACACGTCTGACGAGCAAAAGGTTAGAGTGGCATATGTGATATCG GAAGATCAGCACGTGGATTTGCTCATCAAGCCGGTAGGCACGCAGAAATT TTACAAGCACGCGAAGGTCATC
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Coding sequence (CDS) from alignment at H-elongata_contig8499:3156..4127+

>mRNA_H-elongata_contig8499.16096.1 ID=mRNA_H-elongata_contig8499.16096.1|Name=mRNA_H-elongata_contig8499.16096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig8499:3156..4127+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGAAACGTTCGACGTCAAGAAGGCAAGCAAGATACCGGCTACGTC
AGGGGTACCAACACTCTCAAAGGCGGAAGAACCGCGGAACCCGGAGAAGG
AAGAAATGAGGAAGTTTCCATACCGGGAGGAAGTAGGGGCGCTTATATGG
ACGGCGACGATGACACGGCCGGACATTGTAGGCGCAGTACGCTCTGTGGT
CAGGTTCTACAAAAATCCTGGGCCGGCGCATAAGAAGGCAGTGATAAATT
TGATTCAGTATCTCCTTCGCACAATGGATTGGGAGATTTCATACAGTGGA
CAGACCTGTGGACTTTGCATGGAGGTATACACGGACTCGGACTTCGGAAC
CTGCCTGGATACGAGACGGCCGGTGTCGGGTGCGGTGTTGATGCTGCCGA
AAAAAGCGATCATCTGGTACTCAATGATGCAAGAAGTGGCAGCATCGGAT
ACCTCGGAAACAGTGTACGTTGCTTTATCAGAGGCGGAAAAGGAGGTTCT
ATTTGTTTTAGATATGTTTGAGGAGTTCGTGGAACCGTCGATAAGGATCG
GTGCAGTGAATGTGTTCGAAGACAATGAGGGGGGCATCAAGCTGGCCACA
AACAAACATGCGAGTCCTAGGACAAAGTACATTAATGTGAAGCATCATAT
GGTGAGGGACACGTCTGACGAGCAAAAGGTTAGAGTGGCATATGTGATAT
CGGAAGATCAGCACGTGGATTTGCTCATCAAGCCGGTAGGCACGCAGAAA
TTTTACAAGCACGCGAAGGTCATCATGGTGGAAACGTTCGACGTCAAGAA
GGCAAGCAAGATACCGGCTACGTCAGGGGTACCAACACTCTCAAAGGCGG
AAGAACCGCGGAACCCGGAGAAGGAAGAAATGAGGAAGTTTCCATACCGG
GAGGAAGTAGGGGCGCTTATATGGACGGCGACGATGACACGGCCGGACAT
TGTAGGCGCAGTACGCTCTGTGGTCAGGTTCTACAAAAATCCTGGGCCGG
CGCATAAGAAGGCAGTGATAAATTTGATTCAGTATCTCCTTCGCACAATG
GATTGGGAGATTTCATACAGTGGACAGACCTGTGGACTTTGCATGGAGGT
ATACACGGACTCGGACTTCGGAACCTGCCTGGATACGAGACGGCCGGTGT
CGGGTGCGGTGTTGATGCTGCCGAAAAAAGCGATCATCTGGTACTCAATG
ATGCAAGAAGTGGCAGCATCGGATACCTCGGAAACAGTGTACGTTGCTTT
ATCAGAGGCGGAAAAGGAGGTTCTATTTGTTTTAGATATGTTTGAGGAGT
TCGTGGAACCGTCGATAAGGATCGGTGCAGTGAATGTGTTCGAAGACAAT
GAGGGGGGCATCAAGCTGGCCACAAACAAACATGCGAGTCCTAGGACAAA
GTACATTAATGTGAAGCATCATATGGTGAGGGACACGTCTGACGAGCAAA
AGGTTAGAGTGGCATATGTGATATCGGAAGATCAGCACGTGGATTTGCTC
ATCAAGCCGGTAGGCACGCAGAAATTTTACAAGCACGCGAAGGTCATC
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