mRNA_H-elongata_contig84959.16092.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A836C9P0_9STRA (Calcium release-activated calcium channel protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9P0_9STRA) HSP 1 Score: 134 bits (337), Expect = 7.390e-37 Identity = 74/150 (49.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query: 1 VAGMAWNIKYREKDMEFRKKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKYDVK-AKHENYPSFQRFWASRCESDWRFSFRAFNV 447
VA MAW +K RE+D+E+R+ E++W RK +W R V+++ +E K KQLE +A LS L+AGFALV M ++ IP VN LL+ F A+ VG+ L+AMLSST++LVA++KYD K A + P F FW++ CE+DWR SFR FN+
Sbjct: 2 VADMAWGMKCREEDLEYRRLEMEW-----RKHDLWCRWVDEQWHAMEEKAKQLEQIAQLSALLAGFALVAMCQMQIPDGVNGWLLVSFGTVTAAAVGVPLIAMLSSTLVLVAVIKYDPKVAVNAACPDFGTFWSTHCEADWRLSFRCFNI 146
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: D7G860_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G860_ECTSI) HSP 1 Score: 123 bits (309), Expect = 4.410e-32 Identity = 80/150 (53.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query: 1 VAGMAWNIKYREKDMEFRKKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKYDVKAKHENYPSFQRFWASRCESDWRFSFRAFNVG 450
+A MAWNIK RE+DMEFR+ VASLS LIAGFALV MVEV GLMLLAMLSST MLVAIMKYDVKAK +YPSFQRFWASRCESDWRFSFRAFN+G
Sbjct: 9 MADMAWNIKCREEDMEFRRXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEV----------------------GLMLLAMLSSTFMLVAIMKYDVKAKDRHYPSFQRFWASRCESDWRFSFRAFNIG 131
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A7S4NBN3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBN3_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.050e-24 Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 1
Query: 1 VAGMAWNIKYREKDMEFRKKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKYDVKAKHENYPSFQRFWASRCESDWRFSFRAF 441
+A MAW +K RE+DM+ R E K +QL+ V+ S LIAGF++V +VEV IPSD++PVLL+ F T A VV LML++ML+ST +LVAI++YD + F FW RCESDW+F+ RAF
Sbjct: 13 MADMAWEVKCREEDMKQRALEN------------XXXXXXXXXXXXXXKAQQLKAVSHQSALIAGFSMVVLVEVQIPSDLHPVLLVMFGCTTAGVVSLMLVSMLNSTFVLVAILRYDCVRREA---PFAEFWRKRCESDWKFALRAF 144
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A6S9GQE6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9GQE6_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.350e-24 Identity = 55/100 (55.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query: 151 KQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKYDVKAKHENYPSFQRFWASRCESDWRFSFRAFNVG 450
+QL+ V++ S LIAGF++V +VEV IP ++NPVLL+ F T A+VVGLML AML+ST MLVAI++YD + F +FW +RCESDW+F+ RAF G
Sbjct: 62 QQLKAVSNQSALIAGFSMVVLVEVQIPKNMNPVLLVTFGCTTAAVVGLMLTAMLNSTFMLVAILRYDCVQREV---PFAKFWRTRCESDWKFALRAFAYG 158
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A7S2S1Q7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1Q7_9STRA) HSP 1 Score: 101 bits (251), Expect = 2.740e-23 Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 1
Query: 10 MAWNIKYREKDMEFRKKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKYDVKA--------KHENYPSFQRFWASRCESDWRFSFRAFNVG 450
MAW+++ R++DM R E R+ K +QL+ ++ LS LIAGFA++ MVE+ +P D++ LL+ F T+A VVGLML+AMLSST++L+AI+K+D K+ + + SF+ FW + CE DW+ +++AF G
Sbjct: 17 MAWDVRCRDEDMVQRATE-----NHRRRIXXXXXXXXXXXXXXXEKAEQLKAISHLSALIAGFAMIVMVEIQLPDDLHLGLLVIFGGTSAGVVGLMLIAMLSSTMVLIAILKFDCKSVADTASSGRPPRFQSFEEFWTTLCEDDWQMAYQAFTKG 166
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A6U0JNC6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JNC6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.880e-22 Identity = 62/150 (41.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query: 1 VAGMAWNIKYREKDMEFRKKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKYDVKAKHENYPSFQRFWASRCESDWRFSFRAFNVG 450
+A MAW +K RE+DM+ R E K +QL+ V+ S LIAGF++V +VE+ IP+D++P LL+ F T A VV LML+AML++T +LVAI++YD K E F FW RCESDW+ + +AF +G
Sbjct: 14 MADMAWEVKCREEDMKQRALEN------------XXXXXXXXXXXXXXKAQQLKAVSHQSALIAGFSMVVLVEIQIPTDLSPGLLVTFGCTTAGVVSLMLIAMLNATYILVAILRYDC-VKRET--PFSDFWRKRCESDWQLALKAFGLG 148
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A8K1CQZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQZ8_PYTOL) HSP 1 Score: 85.1 bits (209), Expect = 2.670e-17 Identity = 54/163 (33.13%), Postives = 93/163 (57.06%), Query Frame = 1
Query: 28 YREKDMEFRKKEIQWHMEEARKAAVWWRGVN-----------DRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKY----------DVKAKHENYPS-FQRFWASRCESDWRFSFRAFNVG 450
+R++D++ R++E QW E+A + WR + + KR ++ + KQL ++ LS L+AGF++V+MVE+N+P D+N VL+ F+ V MLLAML+ T++L+A+ +Y D+ + S F +W +CES+W ++R F +G
Sbjct: 23 WRDEDVQHREQEKQWR-EDAIMREIAWRNADLERERRVLKLENEKRIIDARHKQLSAISQLSALLAGFSMVSMVEINLPEDLNEVLMAFYGVVCCVVFIFMLLAMLTCTLLLLAVTRYVTHTLEGEVRDLTLIELDLVSPFYAWWLRKCESEWLLAYRFFRLG 184
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A7S1BSJ4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BSJ4_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.710e-17 Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query: 1 VAGMAWNIKYREKDMEFRKKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKYDVKAKHENYPSFQRFWASRCESDWRFSFRAFNVG 450
VA MAW +K RE+DM+ R K++QL+ V+ LS LIAGFA+V +VE++IP + LL+ F + V+ LML+AML++ +MLVAI KYD + F FW RCE+D+ ++ RAF +G
Sbjct: 11 VADMAWEVKCREEDMK------------QRSXXXXXXXXXXXXXXXXXKSQQLKAVSHLSALIAGFAMVVLVEISIPENFPGPLLMAFGVATSIVISLMLVAMLNACLMLVAINKYDCIRREI---PFNVFWRKRCETDFVYALRAFLLG 145
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A6G0W715_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W715_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.520e-15 Identity = 47/162 (29.01%), Postives = 92/162 (56.79%), Query Frame = 1
Query: 28 YREKDMEFRKKEIQWHMEEARKAAVWWRG----------VNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAIMKY-------DVKAKHENYPSFQR----FWASRCESDWRFSFRAFNVG 450
+R +D+E R +EIQW ++ ++ W + + +R+ + +++QL V+SL L+ GFALV+++ VN+P+++N LL + +A + M+++ ++ T++LVAI +Y DV+ H++ F+ +W +CE+DW +R F +G
Sbjct: 21 WRREDVEHRNQEIQWRTDDLKREQEWREQDVRRIKIQAKLENERRQADTRSEQLSAVSSLGALLGGFALVSIINVNLPTNINLDLLWVYGVVSALCICCMVISSVTFTVLLVAITRYTAHELDYDVRRMHDDDIDFESPFYTWWLKKCETDWMLGYRLFRLG 182
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Match: A0A485KZP2_9STRA (Aste57867_13690 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZP2_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.120e-15 Identity = 50/164 (30.49%), Postives = 97/164 (59.15%), Query Frame = 1
Query: 13 AW---NIKYREKDMEFR----KKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLELVASLSVLIAGFALVTMVEVNIPSDVNPVLLIFFWATAASVVGLMLLAMLSSTIMLVAI-------MKYDVKAKHEN----YPSFQRFWASRCESDWRFSFRAFNVG 450
AW ++++R+++ ++R K+E +W ++ R+ V + N+R R+ + + +QL V+SL L+ GFALV+M+ V +P D+N LL + +A + M+++ ++ T++LVAI ++YDV+ H++ F +W ++CE+DW+ +R F G
Sbjct: 20 AWRREDLQHRDQECQWRTDDLKREQEWREQDIRRIRVQAKVENER-RQADTRAEQLSAVSSLGALLGGFALVSMINVGLPEDINLTLLWVYGIVSAITICTMVVSAVAFTMLLVAITRYSAHDLEYDVRRMHDDDIDHESPFYNWWLNKCETDWQMGYRLFRFG 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84959.16092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84959.16092.1 >prot_H-elongata_contig84959.16092.1 ID=prot_H-elongata_contig84959.16092.1|Name=mRNA_H-elongata_contig84959.16092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp MAWNIKYREKDMEFRKKEIQWHMEEARKAAVWWRGVNDRKRKVEGKTKQLback to top mRNA from alignment at H-elongata_contig84959:844..2648+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84959.16092.1 ID=mRNA_H-elongata_contig84959.16092.1|Name=mRNA_H-elongata_contig84959.16092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1805bp|location=Sequence derived from alignment at H-elongata_contig84959:844..2648+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84959:844..2648+ >mRNA_H-elongata_contig84959.16092.1 ID=mRNA_H-elongata_contig84959.16092.1|Name=mRNA_H-elongata_contig84959.16092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig84959:844..2648+ (Himanthalia elongata Himel1 dioecious)back to top |