mRNA_H-elongata_contig84937.16090.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84937.16090.1
Unique NamemRNA_H-elongata_contig84937.16090.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: D8LL52_ECTSI (Acyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL52_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 2.730e-48
Identity = 73/113 (64.60%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    7 RDGDVAQDTMPPTVFCYHPHGVFTQSYLLNGSINEELPDIYGLLASILHYAPMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            ++G  + D MPPTVFCYHPHGVFTQ Y++NGS+N+ELP I GLLA+ L++AP+F+LV GRW   CAP+SK+ F+D M+K  SF IIPGGFQEA++SKLG DRVW+K R+G VK
Sbjct:  154 KEGPESWDNMPPTVFCYHPHGVFTQGYIINGSMNQELPKILGLLATALYHAPLFRLVFGRWAGSCAPSSKEVFLDQMKKGLSFGIIPGGFQEATLSKLGEDRVWMKNRKGLVK 266          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A7S4D9T5_HETAK (Acyltransferase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9T5_HETAK)

HSP 1 Score: 112 bits (281), Expect = 1.280e-27
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   49 FCYHPHGVFTQSYLLNGSINEELPDIYGLLASILHYAPMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            FCYHPHGV +  ++LN         ++G++A  L YAP++   V RW     PASKK+    MEK  SF IIPGGF+EA+ISKLG  RV+LKKR+GFVK
Sbjct:  129 FCYHPHGVLSWGFVLNAGFRHFFEPLFGVVADALCYAPLWYWFVTRWTKAVRPASKKHMTRYMEKGESFGIIPGGFEEATISKLGAQRVYLKKRKGFVK 227          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A836CL97_9STRA (Acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL97_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.100e-22
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   37 PPTVFCYHPHGVFTQSYLLNGSINEELPDIYGLLASILHYAPMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            P T+ CYHPHGV + S++LNG   +E     GL+   L++AP F+  +  W      A+K NF  LM+ +    +IPGG +EA+IS  G DRV+LK R+GF+K
Sbjct:  116 PGTLMCYHPHGVLSWSFILNGGFRKEFEPGLGLVVDGLYHAPFFRWFIADWTKTVQAANKPNFQRLMKSKALLGLIPGGLEEATISCKGKDRVYLKARKGFIK 218          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A6B2LGP4_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LGP4_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 1.910e-17
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    7 RDGDVAQDTMPPTVFCYHPHGVFTQSYLLNGSINEELPDIYGLLASILHYAPMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
             D D+      PT+ C HPHG+F   + +  +  EE  D++   +S L+ +P F+ V+   +   +P  K    +LM+K+ + A+IPGGF+EAS+   GTD ++LK R+GFVK
Sbjct:    4 EDKDLLSGQKGPTLLCVHPHGIFCLGWGIMFA-REETKDVHFCFSSALYQSPFFR-VLSMLIGKPSPVDKDTISNLMKKKANLALIPGGFEEASLFVKGTDVIYLKHRKGFVK 114          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A7S2CE87_9STRA (Acyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CE87_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.060e-17
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   43 TVFCYHPHGVFTQSYLLNGSINEELPDIYG--LLASILHYAPMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            ++ CYHPHG     +  NG+   EL  I    L+  +L +AP+F  ++ RW+     A   N   LM++ ++  IIPGGF++A+I K G++R+WLKKR+GF+K
Sbjct:  118 SMLCYHPHGALCVGFSWNGAHAPELKHIPAKWLVVDVLMHAPLFGRIL-RWIGNVGGADAGNMKRLMKEGSNIGIIPGGFEDATIMKKGSERIWLKKRKGFIK 219          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A0G4FZ23_9ALVE (Acyltransferase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FZ23_9ALVE)

HSP 1 Score: 79.0 bits (193), Expect = 1.020e-14
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   40 PTVFCYHPHGVFTQSYLLNGSINEELPDIYGLLASILHYA-PMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            PT+ C HPHG+FT    + G + E + D   + A  L++  P+ +L++   L   A AS+ +   LM  + +FAIIPGGF EA I+K  TDRV+L KR+GFVK
Sbjct:  245 PTMVCLHPHGIFTLGLTMLGPLFE-VKDFTLVFAHFLYWLQPVLRLLLDPILKT-ASASRASVNALMRSKRNFAIIPGGFHEAVITKRATDRVFLSKRKGFVK 345          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A7S1LXL7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LXL7_ALECA)

HSP 1 Score: 73.6 bits (179), Expect = 3.830e-14
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   37 PPTVFCYHPHGVFTQSYLLNGSINEELPDIYGLLASIL-HYAPMFQLVVGRWLNV-CAPASKKNFIDLMEKRTS-FAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            P  +FC HPHGV++   L    ++E  PD+  L +  L H+AP+F++    +L +     ++ +    M+   S  A++PGGF EA+IS+ G +RV+LK RRGFVK
Sbjct:    8 PRQLFCIHPHGVYSLGVL---QLSENRPDVRVLSSPYLYHFAPVFRIFAESFLGIKMGSVARGDLTKYMKAGESPLALVPGGFHEATISRPGHERVYLKTRRGFVK 110          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A1V9ZWB6_9STRA (Acyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWB6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.680e-13
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   28 DTMPPT-----VFCYHPHGVFTQSYLLNGSINEELPD--IYGLLASILHYAPMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVKVLM 354
            D  PP      +  YHPHGV +  +  NG  +E   +  +  L++ +L   P+   ++  W   C PA K+NF  L  K+ + A+IPGG++EA+  K G  +V+LKKR+GF+K+ +
Sbjct:   84 DAAPPAPDSKALLAYHPHGVLSCGWTSNGIGSESFANSKVEWLVSDVLFNLPVMGDMIS-WAG-CGPAGKENFEKLCSKKHNIALIPGGYEEATHFKHGQHQVYLKKRKGFIKLAL 197          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A7S1JTW8_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JTW8_9ALVE)

HSP 1 Score: 73.9 bits (180), Expect = 2.850e-13
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   25 QDTMPPTVFCYHPHGVFTQSYLLNGSINEELPDIYG--LLASILHY-APMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            +D  PPTV C HPHG+F    ++  S N +L  +    + +S L+Y AP  ++ +     V   A K++F + M++  +  ++PGGF EA+IS    DRV+L+KR+GFVK
Sbjct:   28 KDGKPPTVICCHPHGIFAAGVVVLTS-NGDLSGLKARTITSSFLYYFAPTLRIFLAP-AGVLGAARKEDFTNYMKRGENMTMVPGGFHEATISCPHKDRVYLRKRKGFVK 135          
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Match: A0A7S0JIW8_9EUKA (Acyltransferase (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIW8_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 4.540e-13
Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   13 GDVAQDTMPPTVFCYHPHGVFTQSYLLNGSINEEL----------PDIYGLLASILHYAPMFQLVV---GRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKLGTDRVWLKKRRGFVK 345
            G +A    P T++CYHPHG+    +++NG  +             P I+ + +++  +   F+++    GR       ASK   +  M++  + AIIPGGF++A+I K G DR ++K+R+GFVK
Sbjct:   93 GALASMGAPRTLYCYHPHGILAAGFVVNGCWSSHFHTLVDERTGEPTIFLVASNLREWGTFFKVLCDLSGR----LGSASKLQIMRWMQQGRNLAIIPGGFEDATIFKNGLDRTFIKRRKGFVK 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84937.16090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL52_ECTSI2.730e-4864.60Acyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A7S4D9T5_HETAK1.280e-2752.53Acyltransferase n=2 Tax=Heterosigma akashiwo TaxID... [more]
A0A836CL97_9STRA3.100e-2243.69Acyltransferase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A6B2LGP4_9EUKA1.910e-1737.17Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S2CE87_9STRA3.060e-1739.81Acyltransferase n=1 Tax=Florenciella parvula TaxID... [more]
A0A0G4FZ23_9ALVE1.020e-1443.69Acyltransferase n=1 Tax=Chromera velia CCMP2878 Ta... [more]
A0A7S1LXL7_ALECA3.830e-1438.68Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A1V9ZWB6_9STRA1.680e-1335.34Acyltransferase n=1 Tax=Thraustotheca clavata TaxI... [more]
A0A7S1JTW8_9ALVE2.850e-1338.18Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A7S0JIW8_9EUKA4.540e-1332.26Acyltransferase (Fragment) n=1 Tax=Calcidiscus lep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84937contigH-elongata_contig84937:1337..2665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D8LL52
KEGG rclassRC00004,RC00037
KEGG koko:K14457
KEGG ReactionR03755,R03756
KEGG Pathwayko00561,ko04975,map00561,map04975
EggNOG free text desc.2-acylglycerol O-acyltransferase activity
EggNOG OGsKOG0831@1,KOG0831@2759
EC2.3.1.22
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmono-or diacylglycerol acyltransferase type 2
Ec32 orthologEc-25_000060.1
Exons3
Model size360
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84937.16090.1prot_H-elongata_contig84937.16090.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84937 1337..2665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.867068-CDS-H-elongata_contig84937:1336..14531622931252.867068-CDS-H-elongata_contig84937:1336..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84937 1337..1453 -
1691679760.8089285-CDS-H-elongata_contig84937:1336..14531691679760.8089285-CDS-H-elongata_contig84937:1336..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84937 1337..1453 -
1622931252.8802764-CDS-H-elongata_contig84937:1929..20301622931252.8802764-CDS-H-elongata_contig84937:1929..2030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84937 1930..2030 -
1691679760.8189673-CDS-H-elongata_contig84937:1929..20301691679760.8189673-CDS-H-elongata_contig84937:1929..2030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84937 1930..2030 -
1622931252.9078171-CDS-H-elongata_contig84937:2523..26651622931252.9078171-CDS-H-elongata_contig84937:2523..2665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84937 2524..2665 -
1691679760.8268456-CDS-H-elongata_contig84937:2523..26651691679760.8268456-CDS-H-elongata_contig84937:2523..2665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84937 2524..2665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84937.16090.1

>prot_H-elongata_contig84937.16090.1 ID=prot_H-elongata_contig84937.16090.1|Name=mRNA_H-elongata_contig84937.16090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MGRDGDVAQDTMPPTVFCYHPHGVFTQSYLLNGSINEELPDIYGLLASIL
HYAPMFQLVVGRWLNVCAPASKKNFIDLMEKRTSFAIIPGGFQEASISKL
GTDRVWLKKRRGFVKVLMY*
back to top

mRNA from alignment at H-elongata_contig84937:1337..2665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84937.16090.1 ID=mRNA_H-elongata_contig84937.16090.1|Name=mRNA_H-elongata_contig84937.16090.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1329bp|location=Sequence derived from alignment at H-elongata_contig84937:1337..2665- (Himanthalia elongata Himel1 dioecious)
ATGGGGCGGGACGGTGATGTCGCGCAGGATACGATGCCGCCGACGGTGTT TTGCTACCACCCACACGGCGTCTTCACTCAATCGTACCTTCTAAATGGCA GCATCAACGAGGAGCTGCCTGATATCTACGGCCTCCTCGCCTGTGAGTCG ACTCCCCGTCGCTGCAGCGATGACCTGGCGGTGGCTTAGCGATGGTCTGT CGAGGCACTAGACTATGTTGAGCGAACGCTAGGGTCTCCCTCACGCATCT AGTTAACCACGCACCGTGTGATATTCTCGCATTTTATCCCTGTACACTAT GCCCAATCCACCTGCGGTACTCTAACGTAATAGTAATATAATGATATTGT AATTTATAATGTGTACCCTGAGGCTGGGGAAGCCGGGAGTGGCAGACCCC GCCCGCTCGCCTTCGCTGCCCTCACCAAAGCAGAGCCAACCTCTGCCCGT CCGATGATCAATCGCGTCGCGCTCCATACCCCGTCGATGCCGCTGGTCTT CATGCTGGTCTTTATTGTGGTCTTCATGCTGGTCTTTATTGTGGTCTTCA TGCTGGTCTTTATTGTGGTCTTTATGCGGGTGGTTATGTGGACTTTATGG TGTATGTCATCGTGTACGCTATGGTGGATGCCCAGCTATCCTACACTACG CCCCCATGTTCCAGTTGGTGGTCGGGAGGTGGTTGAACGTCTGTGCGCCG GCTTCGAAGAAAAACTTCATCGACCTCATGGAGAAGGTGATCGGTAAAGG GCCTTCGGAAGCAGAGACCTCCACCCCCTCCCAAAGACTACAACGTGTAC TCTGTAGTGTGCACTGTACTGTGTAATGTGTTTGTGCAGTGTACAATGTA TATTGTTTACACTATATGTAATCATGCGTAGTCGAATTACTGCTACTGTT GAGTGCGTCACGGGACGAGTCGAATTAGCTGCGCTTGCACTACCTTTCGC ACATAATGGCTCTATACGCACATAATGGCTCCATACACACAGAATTCATC CATAGACATATAATTGCTCCAGAGAGGAAAAATACAAAAGCTTTACTGTT AGTTGATTGTATGATATTACACTAATATACTATGAATGGACTAATAAACT ACCGCACTAGCTTCAGTAGCTTCAGTACATAAGTCCTGTGTCCAACCGGT GTTTTGTATCCACCTTTTTATTTAGTGGTATTTATTTATTCTTAAAATTG CGCCGCCTTCAGAGAACTTCGTTCGCCATCATACCGGGGGGTTTCCAAGA GGCTTCGATTTCAAAGCTGGGGACGGACCGCGTGTGGCTGAAGAAGCGGA GAGGTTTCGTCAAGGTACTAATGTACTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig84937:1337..2665-

>mRNA_H-elongata_contig84937.16090.1 ID=mRNA_H-elongata_contig84937.16090.1|Name=mRNA_H-elongata_contig84937.16090.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig84937:1337..2665- (Himanthalia elongata Himel1 dioecious)
ATGGGGCGGGACGGTGATGTCGCGCAGGATACGATGCCGCCGACGGTGTT
TTGCTACCACCCACACGGCGTCTTCACTCAATCGTACCTTCTAAATGGCA
GCATCAACGAGGAGCTGCCTGATATCTACGGCCTCCTCGCCTATGGGGCG
GGACGGTGATGTCGCGCAGGATACGATGCCGCCGACGGTGTTTTGCTACC
ACCCACACGGCGTCTTCACTCAATCGTACCTTCTAAATGGCAGCATCAAC
GAGGAGCTGCCTGATATCTACGGCCTCCTCGCCTCTATCCTACACTACGC
CCCCATGTTCCAGTTGGTGGTCGGGAGGTGGTTGAACGTCTGTGCGCCGG
CTTCGAAGAAAAACTTCATCGACCTCATGGAGAAGCTATCCTACACTACG
CCCCCATGTTCCAGTTGGTGGTCGGGAGGTGGTTGAACGTCTGTGCGCCG
GCTTCGAAGAAAAACTTCATCGACCTCATGGAGAAGAGAACTTCGTTCGC
CATCATACCGGGGGGTTTCCAAGAGGCTTCGATTTCAAAGCTGGGGACGG
ACCGCGTGTGGCTGAAGAAGCGGAGAGGTTTCGTCAAGGTACTAATGTAC
TGAAGAACTTCGTTCGCCATCATACCGGGGGGTTTCCAAGAGGCTTCGAT
TTCAAAGCTGGGGACGGACCGCGTGTGGCTGAAGAAGCGGAGAGGTTTCG
TCAAGGTACTAATGTACTGA
back to top