mRNA_H-elongata_contig84894.16088.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84894.16088.1
Unique NamemRNA_H-elongata_contig84894.16088.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: UPI001EEADC39 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEADC39)

HSP 1 Score: 62.4 bits (150), Expect = 1.630e-8
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query:    1 SVARAVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKL-TKNLMEKKKAATETLKSMLVG-KSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            SV  A+LD ++L  Q L  VE+  F+    T   +P + +  R  L TK L E+ K  +E LK  L   ++ A T+DIWTS+SN SY+SLT H+I  +     L S   +       HT   I   +R + +E  +   +  + TD A+N
Sbjct:  126 SVDDALLDMIVLDYQPLQIVENVGFKNY--TKKLNPDYTLPSRKLLSTKLLDERYKVCSEALKQKLATVENIALTTDIWTSDSNRSYMSLTCHFILDAK----LNSNVLSTSELPLDHTSDNIANAIRNIAEEWQVHHKIVAVVTDNASN 269          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: A0A6S7KGH1_PARCT (Zinc finger BED domain-containing 1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KGH1_PARCT)

HSP 1 Score: 60.8 bits (146), Expect = 4.510e-8
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 1
Query:    4 VARAVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNLMEKK--KAATETLKSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            +  +++  +    Q LS VE+  F K ++     P + +  R+ +T++L+ KK  K      + +   K  A T+D+WTSN  +SY++LT H+I   N    L S           HT   + E+L+ + KE  I + + C+ TD AAN
Sbjct:   98 ITESLVGMIAKDMQPLSVVENEGFIKFVKEL--DPRYQLPSRSTITRSLLPKKYEKLKDAVKRELTQVKHVALTTDLWTSNQTLSYLTLTCHFI---NHEMQLCSKVLETLYVQKDHTAPNLPEELKNIAKEWEITQKICCIITDNAAN 241          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: A0A815UR02_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815UR02_ADIRI)

HSP 1 Score: 60.8 bits (146), Expect = 5.620e-8
Identity = 46/146 (31.51%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    4 VARAVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNLMEKKKAATETL--KSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDT 435
            + R   + +I +   LS VE+P  + + Q A   PS+ + KR     N++ +    T       +    S   T+DIWTS SN +Y+++T+H+I+TSN+   L+S       F G+HT  RI E+L  +  +  I   V C+ +DT
Sbjct:  136 LTRLAANLIISTLLPLSLVENPQLQLIFQEA--EPSYILPKRKYFIGNVLNQMYDETRNRVQNELNCAISVCLTTDIWTSQSNEAYMTVTVHFIDTSNSK--LKSFVLETTEFSGNHTAQRIVERLENICIDWSILDKVVCLVSDT 277          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: UPI001FA006C5 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA006C5)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-7
Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   13 AVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNLMEKKKAATETLKSMLVG-KSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            A+LD + +  Q L  VE+  F  +  +   +P + +  R KLT+ + EK    +   K  L   +  A T+DIWTS+S  SYIS+T H+IE S     L+S   A       HT   I   LR +L E  I + +  + TD A++
Sbjct:  131 ALLDLITIDMQPLQIVENEGF--IAYSKKLNPDYVLPSRKKLTEMMEEKYNICSSEAKQKLQSVEYIALTTDIWTSDSQKSYISVTAHFIENSK----LQSLIIATSELADQHTSLNIANALRNILNEWNIFEKIVTIVTDNASS 269          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: UPI001F143E56 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F143E56)

HSP 1 Score: 60.1 bits (144), Expect = 1.030e-7
Identity = 47/145 (32.41%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   13 AVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNLMEKKKAATETLKSMLVGKSPAA-TSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            A+L+ ++L  Q L  VE+  FRK ++T   +  +++  R K+T++L EK K  +   K  L   +  A T+DIW+S+S  S+IS+T H+I       TL S   +      +HT   I   L+ +L E  I   V  + TD A++
Sbjct:  109 ALLNMIVLDMQPLQIVENEGFRKFVKTL--NRDYELPSRKKVTQSLEEKYKICSSEAKEKLKEVADIAITTDIWSSDSQKSFISVTTHFIRQG----TLNSVVISTSELLENHTSLNIANSLKAILMEWQIFDKVVTIVTDNASS 247          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: A0A015JAU8_RHIIW (Uncharacterized protein n=7 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015JAU8_RHIIW)

HSP 1 Score: 59.3 bits (142), Expect = 1.840e-7
Identity = 49/146 (33.56%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   16 VLDWVILSNQSLSAVEHPAFRKVLQTATGS---PSFDVGKRTKLTKNLMEKKKAATETLKSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            ++ WVI++ Q  + VE P+F + + +       PS D  KR     NL E      + +  M++GK  + T+DIWTS S  S++SLT H+I+     W LRS         GSHTG  I       L+ L I+  +  +T D A+N
Sbjct:    5 LVQWVIINQQPFTVVEEPSFIEFVHSLHPGALVPSADTIKRNIY--NLYEVNVKKIKDILQMVLGKI-SFTTDIWTSPSTKSFLSLTAHFIDKE---WKLRSVIVDFIQMYGSHTGENIKNTFISGLENLSIEDKLFGITLDNASN 144          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: A0A1S3R3Z6_SALSA (uncharacterized protein LOC106600302 n=9 Tax=Salmonidae TaxID=8015 RepID=A0A1S3R3Z6_SALSA)

HSP 1 Score: 58.9 bits (141), Expect = 2.610e-7
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   16 VLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNLMEKKKAATETLKSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            V ++++ + QSLS +E PAFRK+++  +G     + + T +   +M   K   E  + +   +S   T+DIW+++ N SYI +T HWIE +      +S   AC    GSHT   I  K+  +     I+  +    TD  +N
Sbjct:  111 VFNFMVENVQSLSVLEQPAFRKLIEGLSGG-KMSMTRNTFINGIMMAYSKMKEELKEKLDSVQSVCTTADIWSAH-NRSYIGMTCHWIEKNELE--RKSAALACARIRGSHTFETIAAKIHEIHLAYNIENKLQATVTDNGSN 249          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: A0A821JET5_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821JET5_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 3.270e-7
Identity = 37/146 (25.34%), Postives = 72/146 (49.32%), Query Frame = 1
Query:    4 VARAVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNLMEKKKAATE--TLKSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDT 435
            + + + D++I +   LS VE P  + + Q A   PS+ + KR      + +   +  +      + +      T+DIWTS +N +Y+++T H+++  N    +++     + F G+HT  RI E+L  +  +  I   + C+ TDT
Sbjct:  124 LTKLIADFIIYNYLPLSIVESPQLQVIFQEA--EPSYVIPKRKYFVNKIFQDMYSEIQQNVYNELQLAPGICLTTDIWTSQANQAYMTVTAHFVDLKNNK--IKNFVLETKEFSGNHTAERIVERLNNICIDWSISDKIVCLVTDT 265          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: A0A814BW25_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814BW25_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 4.860e-7
Identity = 48/150 (32.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query:   16 VLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTK---NLMEKK----KAATETLKSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            +++W+I   Q+++ V +  F +++ T    P++ +  R K+      L EKK    K   E +KS         TSDIWTS+S  SYISLTLH+I  +N    L       + F G+H    I   +  +L E GI + +  +T+D A+N
Sbjct:  150 LVEWIIDDLQAINVVTNKKFGELMNTL--DPNYQIPSRNKIDSIIDQLYEKKIIERKQILEKIKSKF-----HCTSDIWTSSSGDSYISLTLHFINNNNK---LDQLLLDIKSFPGTHNYRTISSIIDSILDENGIKQRIASVTSDNASN 289          
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Match: A0A6S7I7Z0_PARCT (Zinc finger BED domain-containing 1-like n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I7Z0_PARCT)

HSP 1 Score: 57.8 bits (138), Expect = 6.540e-7
Identity = 43/149 (28.86%), Postives = 73/149 (48.99%), Query Frame = 1
Query:    4 VARAVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNLMEKK--KAATETLKSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAWTLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN 444
            +  +++  +    Q LS VE+  F K ++       + +  R+ +T++L+ KK  K      + +   K  A T+D+WTSN  +SY++LT H+I   N    L S           HT   + E+L+ + KE  I + + C+ TD AAN
Sbjct:   98 ITESLVGMIAKDMQPLSVVENEGFIKFVKEL--DLRYQLPSRSTITRSLLPKKYEKLKDAVKRELTQVKHVALTTDLWTSNQTLSYLTLTCHFI---NHEMQLCSKVLETLYVQKDHTAPNLAEELKNIAKEWEITQKICCIITDNAAN 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84894.16088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001EEADC391.630e-834.00E3 SUMO-protein ligase ZBED1-like n=1 Tax=Homalodi... [more]
A0A6S7KGH1_PARCT4.510e-829.53Zinc finger BED domain-containing 1-like n=1 Tax=P... [more]
A0A815UR02_ADIRI5.620e-831.51Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
UPI001FA006C51.010e-733.10Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI001F143E561.030e-732.41E3 SUMO-protein ligase ZBED1-like n=1 Tax=Vanessa ... [more]
A0A015JAU8_RHIIW1.840e-733.56Uncharacterized protein n=7 Tax=Rhizophagus irregu... [more]
A0A1S3R3Z6_SALSA2.610e-730.07uncharacterized protein LOC106600302 n=9 Tax=Salmo... [more]
A0A821JET5_9BILA3.270e-725.34Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A814BW25_9BILA4.860e-732.00Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6S7I7Z0_PARCT6.540e-728.86Zinc finger BED domain-containing 1-like n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84894contigH-elongata_contig84894:1869..2567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog6500.XP_005101836.1
EggNOG free text desc.RNA polymerase II regulatory region DNA binding
EggNOG OGs39TTD@33154,3BCXB@33208,3CYBV@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.692384-CDS-H-elongata_contig84894:1868..20661622931252.692384-CDS-H-elongata_contig84894:1868..2066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 1869..2066 -
1691679760.734953-CDS-H-elongata_contig84894:1868..20661691679760.734953-CDS-H-elongata_contig84894:1868..2066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 1869..2066 -
1622931252.708378-CDS-H-elongata_contig84894:2321..25671622931252.708378-CDS-H-elongata_contig84894:2321..2567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 2322..2567 -
1691679760.7498899-CDS-H-elongata_contig84894:2321..25671691679760.7498899-CDS-H-elongata_contig84894:2321..2567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 2322..2567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84894.16088.1prot_H-elongata_contig84894.16088.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84894 1869..2567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84894.16088.1

>prot_H-elongata_contig84894.16088.1 ID=prot_H-elongata_contig84894.16088.1|Name=mRNA_H-elongata_contig84894.16088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
SVARAVLDWVILSNQSLSAVEHPAFRKVLQTATGSPSFDVGKRTKLTKNL
MEKKKAATETLKSMLVGKSPAATSDIWTSNSNVSYISLTLHWIETSNTAW
TLRSGTAACEVFDGSHTGARIGEKLRGMLKELGIDKSVTCMTTDTAAN
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mRNA from alignment at H-elongata_contig84894:1869..2567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84894.16088.1 ID=mRNA_H-elongata_contig84894.16088.1|Name=mRNA_H-elongata_contig84894.16088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig84894:1869..2567- (Himanthalia elongata Himel1 dioecious)
AGTGTTGCACGCGCTGTCCTCGACTGGGTCATCCTCTCCAACCAGTCGCT TTCGGCTGTGGAGCACCCAGCGTTCCGGAAGGTCCTGCAGACAGCAACCG GAAGCCCTAGCTTCGACGTCGGCAAACGAACGAAGCTCACCAAAAACCTG ATGGAGAAGAAGAAGGCTGCCACGGAGACTCTCAAGAGCATGCTCGTCGG TAAAAGCCCGGCGGCGACCAGCGACATTTGGACATCAAATTCCAACGTGA GTTCAGCAGCTACCCACCACGTTTGAAGCTACACACGTACCAAACTTGTG CCCGGTGTTGAGTAATGGGCTCGAAGAGCGATGTTCGTCCACCAAGTCAT GTATTTCCTTGATACGTGTACCAATACAAGAAATCGACATCCGAGAGAAC AGTACACAAAATGAGCGGTGAGCTTTTCGCAACTTAACTTCTTTGCTTTG TTTTTTTTCCCGTGCATGCCGTATTCCGCAATGTCGCCGCAACTTTTTCA GGTGTCCTACATCAGCCTGACTCTTCACTGGATCGAGACATCCAACACCG CGTGGACCCTCAGGAGTGGCACCGCAGCTTGCGAGGTGTTCGACGGATCT CATACCGGAGCGCGCATCGGGGAGAAGCTCAGGGGCATGCTCAAGGAGCT AGGGATCGACAAGTCGGTGACCTGCATGACGACCGACACGGCTGCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig84894:1869..2567-

>mRNA_H-elongata_contig84894.16088.1 ID=mRNA_H-elongata_contig84894.16088.1|Name=mRNA_H-elongata_contig84894.16088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig84894:1869..2567- (Himanthalia elongata Himel1 dioecious)
AGTGTTGCACGCGCTGTCCTCGACTGGGTCATCCTCTCCAACCAGTCGCT
TTCGGCTGTGGAGCACCCAGCGTTCCGGAAGGTCCTGCAGACAGCAACCG
GAAGCCCTAGCTTCGACGTCGGCAAACGAACGAAGCTCACCAAAAACCTG
ATGGAGAAGAAGAAGGCTGCCACGGAGACTCTCAAGAGCATGCTCGTCGG
TAAAAGCCCGGCGGCGACCAGCGACATTTGGACATCAAATTCCAACAGTG
TTGCACGCGCTGTCCTCGACTGGGTCATCCTCTCCAACCAGTCGCTTTCG
GCTGTGGAGCACCCAGCGTTCCGGAAGGTCCTGCAGACAGCAACCGGAAG
CCCTAGCTTCGACGTCGGCAAACGAACGAAGCTCACCAAAAACCTGATGG
AGAAGAAGAAGGCTGCCACGGAGACTCTCAAGAGCATGCTCGTCGGTAAA
AGCCCGGCGGCGACCAGCGACATTTGGACATCAAATTCCAACGTGTCCTA
CATCAGCCTGACTCTTCACTGGATCGAGACATCCAACACCGCGTGGACCC
TCAGGAGTGGCACCGCAGCTTGCGAGGTGTTCGACGGATCTCATACCGGA
GCGCGCATCGGGGAGAAGCTCAGGGGCATGCTCAAGGAGCTAGGGATCGA
CAAGTCGGTGACCTGCATGACGACCGACACGGCTGCCAACGTGTCCTACA
TCAGCCTGACTCTTCACTGGATCGAGACATCCAACACCGCGTGGACCCTC
AGGAGTGGCACCGCAGCTTGCGAGGTGTTCGACGGATCTCATACCGGAGC
GCGCATCGGGGAGAAGCTCAGGGGCATGCTCAAGGAGCTAGGGATCGACA
AGTCGGTGACCTGCATGACGACCGACACGGCTGCCAAC
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