mRNA_H-elongata_contig84850.16084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84850.16084.1
Unique NamemRNA_H-elongata_contig84850.16084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: D7FXS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS4_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 5.660e-35
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 1
Query:   10 EEQLLEITNIWLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            EE  L+I + W+N+ MT +CV CAGLAAGLTMGL+SI PLEMAIKQRSGTP+EQ+QASRILPLVSRHHFLLVTLLLFNS+ANE
Sbjct:  197 EEDFLQIESTWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQRSGTPEEQQQASRILPLVSRHHFLLVTLLLFNSLANE 279          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: A0A6H5KPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI7_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.370e-34
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 1
Query:   10 EEQLLEITNIWLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            EE  L+I + W+N+ MT +CV CAGLAAGLTMGL+SI PLEMAIKQRSGTP+EQ QASRILPLVSRHHFLLVTLLLFNS+ANE
Sbjct:  194 EEDFLQIESTWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQRSGTPEEQHQASRILPLVSRHHFLLVTLLLFNSLANE 276          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: A0A835ZJ67_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ67_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.740e-23
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 1
Query:   10 EEQLLEITNIWLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            E   L+I  +  N+   ++ + CAGLAAGLT GL+SI PLEMAIKQRSGT  E+RQA RILP++SRHH LLVTLLLFNS+ANE
Sbjct:  188 EGDALKIEGLVPNLICILVLITCAGLAAGLTTGLLSIEPLEMAIKQRSGTVDEKRQARRILPIISRHHLLLVTLLLFNSLANE 270          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: W7SYW4_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYW4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.690e-22
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   43 LNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            LN+  + +CV CA +AAGLT+GL+SI PLE+ IKQR GT +E RQAS +LPL+ RHH+LLVTLLL+NS ANE
Sbjct:  191 LNLTFSFICVLCAAIAAGLTIGLMSIDPLELEIKQRVGTAEECRQASVVLPLIQRHHYLLVTLLLYNSAANE 262          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: A0A4D9CY62_9STRA (Uncharacterized protein ycf23 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY62_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.860e-21
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   43 LNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            LN+  + +CV CA +AAGLT+GL+SI PLE+ IKQR GT +E RQAS +LPL+ RHH+LLVTLLL+NS ANE
Sbjct:  190 LNLTFSFICVLCAAIAAGLTIGLMSIDPLELEIKQRVGTAEECRQASVVLPLIQRHHYLLVTLLLYNSAANE 261          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: W7TKN6_9STRA (Protein mam3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKN6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.540e-20
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   40 WLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            W  +G  V+CV CA  AAGLT+GL+S+ PLE+ +K+R GTP+E++ A +I PL++ HH LLVTLLLFNS+ANE
Sbjct:   19 WYQLGGAVVCVICAAFAAGLTVGLMSLDPLELEVKRRVGTPEERKHAEKICPLIAPHHRLLVTLLLFNSIANE 91          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: A0A482RNV2_9ARCH (DUF21 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNV2_9ARCH)

HSP 1 Score: 86.7 bits (213), Expect = 9.410e-19
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   25 EITNIWLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            E+ +I+ N  M  LCV CAGLAAGLTMGL+S+   ++ IK  +GT +E+  A  ILP+V +HH LLVTLLLFN++ANE
Sbjct:   20 EMEDIY-NASMAALCVICAGLAAGLTMGLLSLDVTKLEIKTMTGTAEEKLAAKSILPIVQQHHLLLVTLLLFNAIANE 96          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: K8YX85_NANGC (CNNM transmembrane domain-containing protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YX85_NANGC)

HSP 1 Score: 85.5 bits (210), Expect = 4.250e-18
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   40 WLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            ++N+G+ ++CV  A LA+GLT+GL+SI  L++ IKQR+GTP ++  A+ ILPL++  H LLVTLLLFNSMA E
Sbjct:  172 FVNLGLALICVLFAALASGLTIGLLSIDTLDLEIKQRAGTPTDKHHAAAILPLLAHRHLLLVTLLLFNSMAAE 244          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: A0A7S3M3H8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M3H8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.960e-18
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   34 NIWLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE 258
            N + N  M  +CV CAGLAAGLTMG++S+   ++ IK R GT +E+  AS +LP++ +HH LLVTLLLFNS+ANE
Sbjct:   34 NDFFNSFMAGVCVLCAGLAAGLTMGMLSLDATKLEIKTRVGTEQEKLDASAVLPIIRKHHLLLVTLLLFNSIANE 108          
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Match: F0YEA8_AURAN (CNNM transmembrane domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEA8_AURAN)

HSP 1 Score: 85.1 bits (209), Expect = 7.270e-18
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   43 LNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQRSGTPKEQRQASRILPLVSR--HHFLLVTLLLFNSMANE 258
            L++ +T  C+ CA LAAGLTMG++S+ PL++ +K R+GT  EQ  A+R+LPLV R  HH +LVTLLL NS ANE
Sbjct:   11 LDLALTATCIICAALAAGLTMGVVSLDPLDLRVKMRTGTKSEQACAARLLPLVDRRPHHQVLVTLLLLNSCANE 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84850.16084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS4_ECTSI5.660e-3579.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPI7_9PHAE1.370e-3479.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJ67_9STRA1.740e-2365.06CNNM transmembrane domain-containing protein n=1 T... [more]
W7SYW4_9STRA1.690e-2265.28CNNM transmembrane domain-containing protein n=1 T... [more]
A0A4D9CY62_9STRA1.860e-2165.28Uncharacterized protein ycf23 n=1 Tax=Nannochlorop... [more]
W7TKN6_9STRA1.540e-2058.90Protein mam3 n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A482RNV2_9ARCH9.410e-1956.41DUF21 domain-containing protein (Fragment) n=1 Tax... [more]
K8YX85_NANGC4.250e-1856.16CNNM transmembrane domain-containing protein n=3 T... [more]
A0A7S3M3H8_9STRA5.960e-1856.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0YEA8_AURAN7.270e-1856.76CNNM transmembrane domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84850contigH-elongata_contig84850:1681..2575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog2880.D7FXS4
KEGG koko:K16302
KEGG TC9.A.40.3
EggNOG free text desc.magnesium ion homeostasis
EggNOG OGsCOG1253@1,KOG2118@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.383077-CDS-H-elongata_contig84850:1680..18341622931252.383077-CDS-H-elongata_contig84850:1680..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84850 1681..1834 +
1691679760.6474037-CDS-H-elongata_contig84850:1680..18341691679760.6474037-CDS-H-elongata_contig84850:1680..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84850 1681..1834 +
1622931252.396404-CDS-H-elongata_contig84850:2471..25751622931252.396404-CDS-H-elongata_contig84850:2471..2575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84850 2472..2575 +
1691679760.6596973-CDS-H-elongata_contig84850:2471..25751691679760.6596973-CDS-H-elongata_contig84850:2471..2575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84850 2472..2575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84850.16084.1prot_H-elongata_contig84850.16084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84850 1681..2575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84850.16084.1

>prot_H-elongata_contig84850.16084.1 ID=prot_H-elongata_contig84850.16084.1|Name=mRNA_H-elongata_contig84850.16084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LEEEEQLLEITNIWLNVGMTVLCVFCAGLAAGLTMGLISIGPLEMAIKQR
SGTPKEQRQASRILPLVSRHHFLLVTLLLFNSMANE
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mRNA from alignment at H-elongata_contig84850:1681..2575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84850.16084.1 ID=mRNA_H-elongata_contig84850.16084.1|Name=mRNA_H-elongata_contig84850.16084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=895bp|location=Sequence derived from alignment at H-elongata_contig84850:1681..2575+ (Himanthalia elongata Himel1 dioecious)
CTGGAAGAAGAGGAACAATTATTGGAGATCACGAACATCTGGTTGAACGT GGGCATGACGGTCCTCTGTGTTTTCTGTGCGGGTTTGGCAGCGGGGCTAA CCATGGGCCTCATCTCTATAGGGCCGCTGGAAATGGCCATCAAGCAACGG AGCGGTAAAATGCGTATGCGGTGTATCTGCAGCAGTGTGGTATAATTATT GGTTTGAGACACGAGATGCATCTACATATATAAAGCCTATGCTGTTTGAA TATGCGTATTCATTCTAGAGACCTGCTCATTCTAGAGACCTGTCAATATA TCGTCCATTCTCCACATGAAATGGTACTTTATGTGTGGCCATCACATACA AGAGCAGATATATGGTCAAATGATGGCTCTAAACAATGCTCCGAAAGCGT GGCCCCTATGGTTTCTATACAAGATGCCATGATTGACGTAAATCCAACCA ACAAGAAAGGTCTGTATAGAGAACTTTCTCCGAATATTATTAGAGCCATC TTTTGACCCGATCGTAAATTATAGAGAAGGTCCTCAACTTGGGCTTATGC ACAAAAAGCATGCAAGGTGCTTCGCTTCGCTGTCCACTTGATTTTCTCCC AAAACCTATCACGTCTTTAGTTTGTCCCTAACTTCTCTCGATTCATGTTC TCCACGGCTAGAATCTATTAATACCACCTCTCTTTATTCCTATATTACCG CCACCACTGCACCCACGCTTCGTGTCCTTTTACCTGGTGATTAGTCAGAA TTTATGGATTATTAAATTATTTTTGCCTCGTTCTGCGTTAGGTACTCCCA AGGAACAGCGGCAGGCGTCGCGCATCCTGCCACTCGTCAGTCGCCACCAC TTCCTGCTGGTGACGCTGCTTCTCTTCAACAGCATGGCGAACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig84850:1681..2575+

>mRNA_H-elongata_contig84850.16084.1 ID=mRNA_H-elongata_contig84850.16084.1|Name=mRNA_H-elongata_contig84850.16084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig84850:1681..2575+ (Himanthalia elongata Himel1 dioecious)
CTGGAAGAAGAGGAACAATTATTGGAGATCACGAACATCTGGTTGAACGT
GGGCATGACGGTCCTCTGTGTTTTCTGTGCGGGTTTGGCAGCGGGGCTAA
CCATGGGCCTCATCTCTATAGGGCCGCTGGAAATGGCCATCAAGCAACGG
AGCGCTGGAAGAAGAGGAACAATTATTGGAGATCACGAACATCTGGTTGA
ACGTGGGCATGACGGTCCTCTGTGTTTTCTGTGCGGGTTTGGCAGCGGGG
CTAACCATGGGCCTCATCTCTATAGGGCCGCTGGAAATGGCCATCAAGCA
ACGGAGCGGTACTCCCAAGGAACAGCGGCAGGCGTCGCGCATCCTGCCAC
TCGTCAGTCGCCACCACTTCCTGCTGGTGACGCTGCTTCTCTTCAACAGC
ATGGCGAACGAGGTACTCCCAAGGAACAGCGGCAGGCGTCGCGCATCCTG
CCACTCGTCAGTCGCCACCACTTCCTGCTGGTGACGCTGCTTCTCTTCAA
CAGCATGGCGAACGAG
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