mRNA_H-elongata_contig84815.16080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84815.16080.1
Unique NamemRNA_H-elongata_contig84815.16080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: D8LF22_ECTSI (Amine oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF22_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.720e-83
Identity = 139/237 (58.65%), Postives = 166/237 (70.04%), Query Frame = 2
Query:  125 DVEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHLSDVPRGRDTCLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDRE-------GQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWA-NEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPSGMTAHAAIDSGKRAALEVMEAIR 811
            DVEF PPLP+ K+ AF  MG+C +VKV+L+F+  VLP LLHGCICSESFIPEFWFRHL ++P G  T LAVGFA GP+ADA+ ++KP+EALKKAL QLDDMFR RKW +       GK D E       G   E  +P  E    G         LPSS YV GLV+DW  +EPFVRGGY YPR+ FDE T+A  AA+V+  LFFAGEHTNTP+G T HAAIDSG RAA  V++A++
Sbjct:  213 DVEFVPPLPEAKLAAFQHMGLCSIVKVILKFDRRVLPPLLHGCICSESFIPEFWFRHLPNLPEGGYTMLAVGFAAGPRADAVTSVKPKEALKKALDQLDDMFRGRKWLEGGG--CTGKGDWEETVEVHTGIAPEHCEPRRETSVSGGQGEGTLAELPSSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASGVLQAVQ 447          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: A0A6H5JVR3_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR3_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 3.260e-83
Identity = 136/225 (60.44%), Postives = 160/225 (71.11%), Query Frame = 2
Query:  125 DVEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHLSDVPRGRDTCLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGK-----DDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWA-NEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPSGMTAHAAIDSGKR 781
            DVEF PPLP+ K+ AF  MG+C +VKV+L+F+  VLPQLLHGCICSESFIPEFWFRHL ++P G  T LAVGFA GP+ADA+ ++KPEEALKKAL QLDDMFR RKW +      KG      +   G   E  +P  E  G G         LPSS YV GLV+DW  +EPFVRGGY YPR+ FDE T+A  AA+++  LFFAGEHTNTP+GMT HAAIDSG R
Sbjct:  314 DVEFVPPLPEAKLSAFQHMGLCSIVKVILKFDRRVLPQLLHGCICSESFIPEFWFRHLPNLPEGGYTMLAVGFAAGPRADAVTSVKPEEALKKALDQLDDMFRGRKWLEGGGCTGKGDWEEAVEGNTGIAPEHCEPHRETSGSGGQGEGTLAELPSSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASINGTLFFAGEHTNTPTGMTVHAAIDSGDR 538          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: A0A482T0E8_9ARCH (Amino_oxidase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0E8_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 1.050e-26
Identity = 83/240 (34.58%), Postives = 115/240 (47.92%), Query Frame = 2
Query:  119 CQDVEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICS--ESFIPEFWFRHLSDVP--RGRDTCLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSVESTV---LPSSGYVNGLVYDWANE--PFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPSGMTAHAAIDSGKRAALEVMEAIR 811
            C  + F P LP+KK+ A S   M + +KV ++F     P+ L G I +  E+  PE WFR  SD+   R +  C A  F T   AD + A+   E  +K + Q+D MF                          L+P    V + N    +  V    PSS Y+ G++  W  E  PF+ GGY  P      N+    AA VDN+LFFAGE  N   G TAHAA+++G RAA +V +A+R
Sbjct:  205 CGYIRFNPTLPRKKVEALSYTKMNKAMKVFIKFSAVCWPKNLIGTITANTETCFPEIWFRDCSDITLDRRQGVCYATAFVTSKYADRLCAMPEHEVYRKMVEQMDVMF------------------------SHLEPRH-CVPLLNGDEKKVKVDLPRPSSVYLGGMMKKWTAEDHPFIGGGYCSPLAGCPVNSGDLIAAPVDNMLFFAGEAANLGPGATAHAALETGVRAASQVNQALR 419          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: A0A024GDC4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDC4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.360e-26
Identity = 75/242 (30.99%), Postives = 114/242 (47.11%), Query Frame = 2
Query:  125 DVEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFW------------FRHLSDVPRGRDTCLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWANEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPS-GMTAHAAIDSGKRAALEVMEAIR 811
            D+++ P LPK+K+ A +  GM R +K++L       P   HG ICS+ FIPEFW            F   S            GFAT   AD +     E+ +++ + QLD ++                      G E L           TP+  S       ++ G+ +DW + PF+RGGYSYP++   E  +   A +++N +FFAGE T+    GM  H A+D+G+RAA EV+ ++R
Sbjct:  772 DIKYVPELPKEKLDAVNSFGMTRAIKIILLVSEQFWPSDTHGVICSDLFIPEFWINSTAGIGYLHKFTSASQEFASEVLYTITGFATSDFADKVCKFSKEDVIEQFVSQLDRIY----------------------GDETLP----------TPATLS-------FIKGMYFDWGDVPFIRGGYSYPKVGQCEGASEKVAKSIENRIFFAGEATSFERPGMAVHCAMDTGERAAREVLLSLR 974          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: F0W4T9_9STRA (Uncharacterized protein ALNC14_022690 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4T9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.390e-25
Identity = 75/242 (30.99%), Postives = 112/242 (46.28%), Query Frame = 2
Query:  125 DVEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRH------LSDVPRGRDTCLA------VGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWANEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPS-GMTAHAAIDSGKRAALEVMEAIR 811
            D+++ P LPK+KI A +  GM R +K++L       P   HG ICS+ FIPEFW         L D    R    +       GFAT   AD +      + + + L+QLD M+ D                                   +T    +T+     ++ G+ +DW + PF+RGGYSYP++   E  +   A +++N +FFAGE T+    GM  H A+D+G RAA EV  ++R
Sbjct:  272 DIKYEPELPKEKIDAVNSFGMTRAIKIILVVSKRFWPADTHGVICSDMFIPEFWINSNAGIGFLHDFADNRKELSSEIYYTITGFATAEFADNLKKFTENQIICQFLNQLDLMYGD-----------------------------------DTVPTPATL----SFIKGMYFDWGDVPFIRGGYSYPKVGQMEGASEQIAKSIENRIFFAGEATSFERPGMAVHCAMDTGDRAAREVSASLR 474          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: A0A250X0T7_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X0T7_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 4.040e-24
Identity = 69/231 (29.87%), Postives = 108/231 (46.75%), Query Frame = 2
Query:  128 VEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHLSDVPRGRD-TCLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWANEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPSGMTAHAAIDSGKRAALEVMEAIRVI 817
            ++F PPLP+ K  A SR+ M  ++K++L F+    P+ +   IC++SF+PE W     +V  G+    +  GF +G +AD   A+    A+   L QLD +F                                      TP  E+    +     G+VYDW+   FV+GGYSYP L          AA V   +FFAGE T+T        A+D+G+RAA +V+ +++++
Sbjct:  247 LKFSPPLPEAKRSAISRVKMGNIIKIILSFKEQFWPENMFDLICTDSFVPEMWMLRYQEVMPGKGHPNIITGFISGEKADIASAMPESTAIASFLGQLDSIF-------------------------------------GTP--EAPKPATHNLAAGVVYDWSKNDFVKGGYSYPSLGALRGDRESLAAPVAGTVFFAGEATSTALNPCVQGAMDTGRRAATQVLASLQLL 438          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: A0A0P1AT21_PLAHL (Amine oxidase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AT21_PLAHL)

HSP 1 Score: 108 bits (271), Expect = 1.140e-23
Identity = 71/247 (28.74%), Postives = 111/247 (44.94%), Query Frame = 2
Query:  128 VEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHLSDV----------------PRGRDT---CLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWANEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPS-GMTAHAAIDSGKRAALEVMEAI 808
            + + PPLP++K+ A     M R  KV+L       P+  HG ICS+ F+PEFWF     +                 +  D+    L  GFA+   A+  + +  +E ++  L QLD ++                                        +V+        +V G+  DW +EP++ GGY+YPR+   ++ +++ AA VDN LFFAGE T     GM+ HAA+D+G RAA +V  A+
Sbjct:  208 IAYSPPLPQQKLNAVKSFDMRRAGKVILHMSGQFWPENAHGVICSDCFLPEFWFNSTQGIGHLKTNGDKQYVANVTDKSADSGAKYLITGFASALYAEKFIGMDHDEIVEGFLDQLDMIY---------------------------------------GTVDEPFPARKNFVKGIYKDWGDEPWICGGYAYPRVGQSDSASSELAAPVDNRLFFAGEATAFEQPGMSVHAAVDTGTRAAAQVTHAL 415          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: G4ZPG5_PHYSP (Amino_oxidase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZPG5_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 1.560e-23
Identity = 72/250 (28.80%), Postives = 112/250 (44.80%), Query Frame = 2
Query:  128 VEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHLSDV----PRGRDTCLA-----------------VGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWANEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPS-GMTAHAAIDSGKRAALEVMEAIR 811
            + + P LP++KI A +   M R  KV+L       P+  HG ICSE F+PEFWF     +    P G +T +A                  GFA    A++ V +  ++ ++  L QLD ++                                        +V+        +V G+  DW +EP++ GGY++PR+   +  + D AA VDN +FFAGE T     GM+ HAAID+G RA+++   A++
Sbjct:  152 IAYTPDLPQEKIEAVNSFSMRRAGKVLLHMSGRFWPEDAHGVICSECFLPEFWFNSSKGIGHLQPNGDNTLIAEPETEDAVEEDKAQYLITGFAGALYAESFVGVDHDKIIENFLDQLDMIY---------------------------------------GTVDEPKPAHKHFVRGMYKDWGDEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGSRASVQAARALQ 362          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: D8RYP0_SELML (Amino_oxidase domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RYP0_SELML)

HSP 1 Score: 107 bits (268), Expect = 5.300e-23
Identity = 78/234 (33.33%), Postives = 110/234 (47.01%), Query Frame = 2
Query:  122 QDVEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHL----SDVPRGRDTCLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSV---ESTVLPSSGYVNGL-VYDWANEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPSGMTAHAAIDSGKRAALEVM 799
            + + F PPLPK K+ A S +GM   VK++L F     P+ +   +C++ F+PEFW        S       + L VGF  G  A  I  L   E   +AL QLD++F   K  K+A                 ++  +E+ G     +    +  + P+S Y     + DW+ E FVRGGYS+P L+       + A  V   LFFAGE T+        AAIDSG RAA EV+
Sbjct:  264 ESIRFNPPLPKSKVDAASTIGMSSAVKILLAFSQRFWPEEMFDVVCTDCFVPEFWATQYPCKSSRDEEALGSVLLVGFIAGETARQISKLSHSEIFSRALSQLDEIFAKIKPTKNAKL--------------SIETFQESGGFYTRAAAKPFDPELQPASFYFAAASLVDWSREDFVRGGYSHPSLNA-RGAREELAKPVHGRLFFAGEATHPGVNPCMQAAIDSGIRAAREVL 482          
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Match: A0A484DUS0_BRELC (Amino_oxidase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUS0_BRELC)

HSP 1 Score: 106 bits (264), Expect = 1.860e-22
Identity = 76/249 (30.52%), Postives = 111/249 (44.58%), Query Frame = 2
Query:  128 VEFWPPLPKKKIVAFSRMGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHLSDVPR-------------------GRDTCLAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGKDDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGY-VNGLVYDWANEPFVRGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPS-GMTAHAAIDSGKRAALEVMEAIR 811
            + + P LP++K+ A +   M R  KV+L  +    P+  HG ICS+ F+PEFW      +                     G    L  GFA    AD  V ++ +  ++  L QLD ++                                  G  + PS      P+  Y V G   DW +EP++RGGY+YPR+   +  + D AA V+N LFFAGE T     GM+ HAA+D+G RAA+EV  A++
Sbjct:  274 IAYTPALPQQKLDAVASFDMRRAGKVLLHMKGRFWPENTHGVICSDCFLPEFWINSTEGIGHLKANGDILCVKNEIKNPDDGEAQYLITGFAGALYADKFVGMEHKLIIEGFLDQLDMIY----------------------------------GTLDEPS------PAHKYFVKGTYKDWGDEPWIRGGYAYPRVGQSDTASKDLAAPVNNRLFFAGEATAYEQPGMSVHAAVDTGTRAAMEVARALQ 482          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84815.16080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF22_ECTSI1.720e-8358.65Amine oxidase-like protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JVR3_9PHAE3.260e-8360.44PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A482T0E8_9ARCH1.050e-2634.58Amino_oxidase domain-containing protein n=1 Tax=ar... [more]
A0A024GDC4_9STRA5.360e-2630.99Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0W4T9_9STRA4.390e-2530.99Uncharacterized protein ALNC14_022690 n=1 Tax=Albu... [more]
A0A250X0T7_9CHLO4.040e-2429.87Amino_oxidase domain-containing protein n=1 Tax=Ch... [more]
A0A0P1AT21_PLAHL1.140e-2328.74Amine oxidase-like protein n=1 Tax=Plasmopara hals... [more]
G4ZPG5_PHYSP1.560e-2328.80Amino_oxidase domain-containing protein n=1 Tax=Ph... [more]
D8RYP0_SELML5.300e-2333.33Amino_oxidase domain-containing protein n=3 Tax=Se... [more]
A0A484DUS0_BRELC1.860e-2230.52Amino_oxidase domain-containing protein n=1 Tax=Br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84815contigH-elongata_contig84815:2..2136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.9
Seed ortholog evalue8.5e-63
Seed eggNOG ortholog2880.D8LF22
KEGG koko:K19413
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size820
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84815.16080.1prot_H-elongata_contig84815.16080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84815 180..2136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.7324145-UTR-H-elongata_contig84815:1..1791622931251.7324145-UTR-H-elongata_contig84815:1..179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84815 2..179 +
1691679760.3387165-UTR-H-elongata_contig84815:1..1791691679760.3387165-UTR-H-elongata_contig84815:1..179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84815 2..179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.746928-CDS-H-elongata_contig84815:179..2921622931251.746928-CDS-H-elongata_contig84815:179..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84815 180..292 +
1691679760.3587322-CDS-H-elongata_contig84815:179..2921691679760.3587322-CDS-H-elongata_contig84815:179..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84815 180..292 +
1622931251.759926-CDS-H-elongata_contig84815:655..11441622931251.759926-CDS-H-elongata_contig84815:655..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84815 656..1144 +
1691679760.3691716-CDS-H-elongata_contig84815:655..11441691679760.3691716-CDS-H-elongata_contig84815:655..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84815 656..1144 +
1622931251.7736597-CDS-H-elongata_contig84815:2096..21361622931251.7736597-CDS-H-elongata_contig84815:2096..2136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84815 2097..2136 +
1691679760.3783333-CDS-H-elongata_contig84815:2096..21361691679760.3783333-CDS-H-elongata_contig84815:2096..2136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84815 2097..2136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84815.16080.1

>prot_H-elongata_contig84815.16080.1 ID=prot_H-elongata_contig84815.16080.1|Name=mRNA_H-elongata_contig84815.16080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MGMCRVVKVVLRFELPVLPQLLHGCICSESFIPEFWFRHLSDVPRGRDTC
LAVGFATGPQADAIVALKPEEALKKALHQLDDMFRDRKWFKDAANRFKGK
DDREGQGAEKLQPLEEAVGIGNTPSVESTVLPSSGYVNGLVYDWANEPFV
RGGYSYPRLDFDENTNADAAAAVDNILFFAGEHTNTPSGMTAHAAIDSGK
RAALEVMEAIRVI*
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mRNA from alignment at H-elongata_contig84815:2..2136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84815.16080.1 ID=mRNA_H-elongata_contig84815.16080.1|Name=mRNA_H-elongata_contig84815.16080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2135bp|location=Sequence derived from alignment at H-elongata_contig84815:2..2136+ (Himanthalia elongata Himel1 dioecious)
GTTCAGCTGACCACGAGCTGAAGGCAACCAAATACGGTTGACCTTCTGCT AAATGTGTGACCAACATACATACATATAGGTAATAGCACTACACGTTGAA CCGTAAACTCCGTGGCCCTGTCAGGACGTTGAATTCTGGCCCCCACTACC CAAGAAAAAAATCGTAGCCTTCAGTCGGATGGGCATGTGCCGCGTCGTGA AGGTGGTCTTGAGGTTCGAGCTCCCTGTGCTGCCCCAGCTTCTCCACGGG TGTATTTGCTCCGAGAGCTTCATCCCAGAGTTCTGGTTCAGGTTAGACGA TATATTATATGAAGCAAAATATATGGGCATATAGACGAGGACAGCTGTTG GGGCTCTATATGCCATGCCACCTGTTCGTTACCTAATTTTTGTTCTGTCA ATCAGGCAGACCAACTAGACCACTCACCCGCCTGATCGATCGAACAACAC CCACTTGAAGAGGCAGCGCACCAACCGAGCCCTTCTCAAGCCCCAGGATA CGTAACAGTAGTTCGTTTGGATTGGGTTTGTGAGTTATCGAGGGAGGGGA GGCTCGTTCCCTTCCGTCGGTTGCGTGTGTGGAGATCGCATCGTGCCAGC AGGGTGCGTGTGACGTTTTCCACCCCATCATCGTGAAAATCTTGATATCG CCAGGCATTTGTCAGACGTGCCGAGAGGGCGCGACACGTGCCTCGCAGTG GGTTTCGCCACCGGTCCCCAGGCAGACGCCATTGTCGCCTTGAAGCCCGA AGAGGCTCTGAAGAAAGCCCTCCATCAGCTCGACGACATGTTCCGAGACC GTAAGTGGTTCAAGGATGCAGCAAATAGATTTAAAGGGAAAGATGACCGG GAAGGCCAGGGCGCCGAAAAGTTGCAGCCGCTAGAAGAAGCCGTGGGGAT CGGTAACACGCCCAGCGTGGAGTCAACGGTGCTGCCGAGCTCAGGCTATG TCAACGGCCTGGTGTATGACTGGGCAAACGAGCCCTTTGTGAGGGGCGGC TACAGCTATCCACGGTTGGATTTCGACGAGAACACTAATGCTGACGCTGC GGCCGCCGTGGACAATATCTTGTTTTTTGCTGGAGAGCATACAAACACTC CCAGCGGAATGACGGCGCACGCAGCTATCGACTCTGGAAAGAGGTAAGAA TGCGGTTCAGGTCCTCCCCGCTTGTTTGGGTCAAAATATTTCGGAGTTAG AACAAACGCAGCGCCGCCTCGCGTGCCTTGTGTGCACATTCCCTCCGGTA GAATCACCTCGTAGTTTACCGTTCTTCATTTCCCGCGTAATGATAATGGG ACGGGACGGGACGGGACAGCCGAACCCGCCTCGCGTGGCCGAATTCTCAA GCCACAAACGGGGACAGAAAAACAATATTTTTCTTTTTTTAGCTCGCCAC TAATAATATTATAGTACGATTGGAAACCATATCCGGTTGATCTATACTAT AGCCTATATACACTTTATATACTAAACTGGTATAGATGATAGCCATACAC AGTATGTTATCCTTTGTCACGTCTGACCAGAGGTTTTTGTAGCAAATCTT AATGATCTCCCTTTGGGAGGGAGGATCAATAATTCGTGTAGCCTAGCATG ACTAGCATGACATGTCCGGATTGCGCGGTTATGTACAATTTAATAAATAC ACACACAAACGTGCAAGGGCGCCTCTCGTCCTGCATGCATCTTGCTCTCG AAGGTCTCCAGGTAAAAGAGGGGCAATGTTGTGAAATCGTCTCGCGGTGG CGACGCCAAGCCCATAAAATACTTTTTTTTAAAATTTGAAATATTAAAGT ATTTTTCGTTCAACGGTTAGGACGTTGCCTTTTCACGGAAAATGTATGGG TTTAATTCCCATAAGGCACCGCTTGTGCGGCACCCGCCGCCTAGCCTTTG TCCAATCAGAGCCCGATTTAAATTTAAATTGGCTGGAAATTTAATTTTTT GTGCCCCGTTAGTACCCGCCCTTACGCTCGTCTGAAAAGTCTCAGCAAAA AGGCAACCGACCACGCGAGTACTCACCCCGCCTACCATTGACCGGTGTTC GCACCCTCAATGCCATCTATCTTATGTTGCCTTTGTTTTTCTCAGGGCGG CATTGGAAGTTATGGAAGCTATTAGAGTTATTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig84815:2..2136+

>mRNA_H-elongata_contig84815.16080.1 ID=mRNA_H-elongata_contig84815.16080.1|Name=mRNA_H-elongata_contig84815.16080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig84815:2..2136+ (Himanthalia elongata Himel1 dioecious)
ATGGGCATGTGCCGCGTCGTGAAGGTGGTCTTGAGGTTCGAGCTCCCTGT
GCTGCCCCAGCTTCTCCACGGGTGTATTTGCTCCGAGAGCTTCATCCCAG
AGTTCTGGTTCAGATGGGCATGTGCCGCGTCGTGAAGGTGGTCTTGAGGT
TCGAGCTCCCTGTGCTGCCCCAGCTTCTCCACGGGTGTATTTGCTCCGAG
AGCTTCATCCCAGAGTTCTGGTTCAGGCATTTGTCAGACGTGCCGAGAGG
GCGCGACACGTGCCTCGCAGTGGGTTTCGCCACCGGTCCCCAGGCAGACG
CCATTGTCGCCTTGAAGCCCGAAGAGGCTCTGAAGAAAGCCCTCCATCAG
CTCGACGACATGTTCCGAGACCGTAAGTGGTTCAAGGATGCAGCAAATAG
ATTTAAAGGGAAAGATGACCGGGAAGGCCAGGGCGCCGAAAAGTTGCAGC
CGCTAGAAGAAGCCGTGGGGATCGGTAACACGCCCAGCGTGGAGTCAACG
GTGCTGCCGAGCTCAGGCTATGTCAACGGCCTGGTGTATGACTGGGCAAA
CGAGCCCTTTGTGAGGGGCGGCTACAGCTATCCACGGTTGGATTTCGACG
AGAACACTAATGCTGACGCTGCGGCCGCCGTGGACAATATCTTGTTTTTT
GCTGGAGAGCATACAAACACTCCCAGCGGAATGACGGCGCACGCAGCTAT
CGACTCTGGAAAGAGGCATTTGTCAGACGTGCCGAGAGGGCGCGACACGT
GCCTCGCAGTGGGTTTCGCCACCGGTCCCCAGGCAGACGCCATTGTCGCC
TTGAAGCCCGAAGAGGCTCTGAAGAAAGCCCTCCATCAGCTCGACGACAT
GTTCCGAGACCGTAAGTGGTTCAAGGATGCAGCAAATAGATTTAAAGGGA
AAGATGACCGGGAAGGCCAGGGCGCCGAAAAGTTGCAGCCGCTAGAAGAA
GCCGTGGGGATCGGTAACACGCCCAGCGTGGAGTCAACGGTGCTGCCGAG
CTCAGGCTATGTCAACGGCCTGGTGTATGACTGGGCAAACGAGCCCTTTG
TGAGGGGCGGCTACAGCTATCCACGGTTGGATTTCGACGAGAACACTAAT
GCTGACGCTGCGGCCGCCGTGGACAATATCTTGTTTTTTGCTGGAGAGCA
TACAAACACTCCCAGCGGAATGACGGCGCACGCAGCTATCGACTCTGGAA
AGAGGGCGGCATTGGAAGTTATGGAAGCTATTAGAGTTATTTAGGGCGGC
ATTGGAAGTTATGGAAGCTATTAGAGTTATTTAG
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