mRNA_H-elongata_contig8481.16079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8481.16079.1
Unique NamemRNA_H-elongata_contig8481.16079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: D7FVJ9_ECTSI (Similar to chemokine (C-C motif) receptor 6a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ9_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 4.400e-37
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
            GTIDDLK AL+ENLE+RGVL KL+A+VRAE+FHTLEGPQ  V+   LSNDNLLINELVRDYL Y+G+ NA  VFM ESGQP    L R FI++++
Sbjct:   20 GTIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQERVLPTPLSNDNLLINELVRDYLSYNGYANALGVFMAESGQPIERSLDRGFIRDEL 114          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A6H5KW76_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW76_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.920e-36
Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
            GTIDDLK AL+ENLE+RGVL KL+A+VRAE+FHTLEGPQ  V+   LSN+NLLINELVRDYL Y+G+ NA  VFM ESGQP    L R FI++++
Sbjct:   20 GTIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQEGVLPTPLSNENLLINELVRDYLSYNGYSNALGVFMAESGQPIERSLDRGFIRDEL 114          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A0G4ISE5_PLABS (LisH domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISE5_PLABS)

HSP 1 Score: 100 bits (249), Expect = 2.790e-25
Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHRCQ 303
            + T+DDLK  L E LE RGVL +L+A++RAEIF+ LE  + D   P LSN+N+++NEL+R+YL+++G+ N  SVFM E+GQPT    +  F+++ +  R Q
Sbjct:    1 MATLDDLKAVLRETLETRGVLSQLQARIRAEIFNALEDQEPD--RPRLSNENMIVNELIREYLEFNGYQNTLSVFMPETGQPTPAPFEAPFLEQHLHIRPQ 99          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A2D4BX57_PYTIN (LisH domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX57_PYTIN)

HSP 1 Score: 97.8 bits (242), Expect = 3.500e-24
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    7 TIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVR 291
            ++DDLK  L + LE RG L ++KA++RAEIF  L+   + V  P LSN+NL+INEL+R+YL+Y+G+ +A SVF+ ESGQP      REF+ +++R
Sbjct:   15 SLDDLKAVLKDTLEARGSLGQIKARIRAEIFSALD--DHSVPKPKLSNENLIINELIREYLEYNGYRHAHSVFLAESGQPLKAPFHREFLAKELR 107          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A835YQT6_9STRA (LisH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.470e-23
Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQ--NDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
            GT+DDLK AL++ LE+ G L KL+A+VRAE+F +LE  +      +P LSN NL+INEL+RDY +Y+G+ +A SVF+ ES QP +  L R FI++++
Sbjct:   22 GTLDDLKDALVDALESSGALGKLRARVRAEVFKSLEPEELATRETAPPLSNANLIINELIRDYFEYNGYSHALSVFLSESCQPDDASLSRGFIRDEL 118          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A3P3Y7H4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y7H4_PLABS)

HSP 1 Score: 100 bits (249), Expect = 1.760e-22
Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHRCQ 303
            + T+DDLK  L E LE RGVL +L+A++RAEIF+ LE  + D   P LSN+N+++NEL+R+YL+++G+ N  SVFM E+GQPT    +  F+++ +  R Q
Sbjct:  483 MATLDDLKAVLRETLETRGVLSQLQARIRAEIFNALEDQEPD--RPRLSNENMIVNELIREYLEFNGYQNTLSVFMPETGQPTPAPFEAPFLEQHLHIRPQ 581          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A2P6NSJ0_9EUKA (LisH domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NSJ0_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 3.360e-22
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
            + T+++LK  L E LE RG L KL+AQVRAEIFHTLEG +       LSNDNL++NEL+ +YL ++ + +A SVFM ESGQP ++ L R  + E V
Sbjct:    1 MATLEELKTVLQETLEARGTLDKLRAQVRAEIFHTLEGGEQ---REQLSNDNLIVNELIHEYLVFNKYYHADSVFMTESGQPRDS-LARPLLAEAV 92          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A024GKL4_9STRA (LisH domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKL4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.940e-22
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    7 TIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHRCQGHF 312
            ++ +LK  L E LE RG L ++KA++RAEIF  L+     +  P LSN+NL++NEL+R+YL+Y+G+ +A SVF+ ESGQPT     R F+  ++  R    F
Sbjct:    7 SLSELKEVLKETLETRGCLGQIKARIRAEIFSALD--DQSIPKPELSNENLILNELIREYLEYNGYRHALSVFLPESGQPTEKAFPRSFLSSELGVREDARF 106          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A5D6XNU9_9STRA (LisH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNU9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.760e-22
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
             ++ DLK  L + L+ RG L +LKA++RAE+F  L+    DV  P LSN+NL+INELVR+YL+Y+G+ +A SVF+ ESGQP      REF+ +++
Sbjct:   11 ASLSDLKDVLKQTLDARGSLGQLKARIRAEVFAALD--DQDVPKPRLSNENLVINELVREYLEYNGYRHALSVFLPESGQPAEKPFSREFLSQEL 103          
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A267H407_9PLAT (LisH domain-containing protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267H407_9PLAT)

HSP 1 Score: 92.4 bits (228), Expect = 1.150e-21
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQ-NDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHR----CQG 306
            + ++D+LK AL ENLE+RGVL  ++A +RAEI+ +LE P+ +    P LSN+NLLINEL+R+YL+++ + NA SV   ESGQP    L R  +  ++  R    CQG
Sbjct:    9 MASVDELKSALKENLESRGVLQDIRASLRAEIYRSLEEPRPSGQQRPGLSNENLLINELIREYLEFNEYSNAASVLAAESGQP-QARLSRSLLSRELNLREDPSCQG 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ9_ECTSI4.400e-3768.42Similar to chemokine (C-C motif) receptor 6a n=1 T... [more]
A0A6H5KW76_9PHAE1.920e-3667.37LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A0G4ISE5_PLABS2.790e-2547.52LisH domain-containing protein n=1 Tax=Plasmodioph... [more]
A0A2D4BX57_PYTIN3.500e-2449.47LisH domain-containing protein n=1 Tax=Pythium ins... [more]
A0A835YQT6_9STRA9.470e-2350.52LisH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A3P3Y7H4_PLABS1.760e-2247.52Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A2P6NSJ0_9EUKA3.360e-2252.08LisH domain-containing protein n=1 Tax=Planoprotos... [more]
A0A024GKL4_9STRA6.940e-2244.12LisH domain-containing protein n=1 Tax=Albugo cand... [more]
A0A5D6XNU9_9STRA8.760e-2248.42LisH domain-containing protein n=1 Tax=Pythium bra... [more]
A0A267H407_9PLAT1.150e-2146.73LisH domain-containing protein (Fragment) n=3 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8481contigH-elongata_contig8481:5452..6229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue8.9e-29
Seed eggNOG ortholog2880.D7FVJ9
Preferred nameFOPNL
KEGG koko:K16535
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034451,GO:0036064,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.microtubule anchoring
EggNOG OGs2B269@1,2S0C1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLIS1 domain protein
Ec32 orthologEc-15_003580.1
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.6673799-CDS-H-elongata_contig8481:5451..55321622931251.6673799-CDS-H-elongata_contig8481:5451..5532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8481 5452..5532 +
1691679760.3145068-CDS-H-elongata_contig8481:5451..55321691679760.3145068-CDS-H-elongata_contig8481:5451..5532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8481 5452..5532 +
1622931251.6835475-CDS-H-elongata_contig8481:5992..62291622931251.6835475-CDS-H-elongata_contig8481:5992..6229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8481 5993..6229 +
1691679760.3253527-CDS-H-elongata_contig8481:5992..62291691679760.3253527-CDS-H-elongata_contig8481:5992..6229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8481 5993..6229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8481.16079.1prot_H-elongata_contig8481.16079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8481 5452..6229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8481.16079.1

>prot_H-elongata_contig8481.16079.1 ID=prot_H-elongata_contig8481.16079.1|Name=mRNA_H-elongata_contig8481.16079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSN
DNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHRC
QGHFI*
back to top

mRNA from alignment at H-elongata_contig8481:5452..6229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8481.16079.1 ID=mRNA_H-elongata_contig8481.16079.1|Name=mRNA_H-elongata_contig8481.16079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=778bp|location=Sequence derived from alignment at H-elongata_contig8481:5452..6229+ (Himanthalia elongata Himel1 dioecious)
GTCGGTACAATCGACGACTTAAAGTTGGCTCTGTTAGAAAATCTGGAGAA TCGAGGGGTGCTATGCAAACTCAAGGCTCAGGTGGGCTTGCAGCTTATGT CATATAGATCCGGTACCAGGGGTACCAATCGATTTTATTAAGCGATCATG CATGTGCATTTGATTCATATGGCAGCTAGAATGGTGAGTTCCCTTTTACT CTAATGGGTATGTTATAATCTTGCTCTCCAATACTATCAACAAGTATCAT CGTACCGATTTTGTTGGTATTTTAGTCAACCGAAACGCTAGCCGTCCCCA GCATCCCTTCTCACGCTTAGTTAGGCAATCAGGCGTATACTTGATAAATC TTCATACATGGCACCGCCGCTGTCGGGATGCATGAAGACATATGTCGACA AAATTTAGCTTACCCCGTTGGCCGGGTTGTCTAGCGATTGCGACATAACT AGCGCGCACTGAAGGCAAGCTGAACGTATCAGAGGGGATACCATGGGGAA TATTTTGCGCAACCCATTAACTGTATCGTTCGCTGGGACAGGTGAGGGCC GAAATATTTCACACGTTAGAAGGGCCGCAAAACGATGTTATCTCCCCATC CCTTTCTAATGATAACCTCCTGATCAACGAGTTGGTGCGAGACTACCTGG ACTACAGCGGCTTTATAAACGCACAAAGCGTATTTATGGTGGAGTCCGGC CAACCTACCAACACTGGCTTAAAAAGAGAGTTCATCAAAGAACAGGTGCG TCATAGATGTCAGGGGCATTTTATTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8481:5452..6229+

>mRNA_H-elongata_contig8481.16079.1 ID=mRNA_H-elongata_contig8481.16079.1|Name=mRNA_H-elongata_contig8481.16079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig8481:5452..6229+ (Himanthalia elongata Himel1 dioecious)
GTCGGTACAATCGACGACTTAAAGTTGGCTCTGTTAGAAAATCTGGAGAA
TCGAGGGGTGCTATGCAAACTCAAGGCTCAGGTCGGTACAATCGACGACT
TAAAGTTGGCTCTGTTAGAAAATCTGGAGAATCGAGGGGTGCTATGCAAA
CTCAAGGCTCAGGTGAGGGCCGAAATATTTCACACGTTAGAAGGGCCGCA
AAACGATGTTATCTCCCCATCCCTTTCTAATGATAACCTCCTGATCAACG
AGTTGGTGCGAGACTACCTGGACTACAGCGGCTTTATAAACGCACAAAGC
GTATTTATGGTGGAGTCCGGCCAACCTACCAACACTGGCTTAAAAAGAGA
GTTCATCAAAGAACAGGTGCGTCATAGATGTCAGGGGCATTTTATTTAGG
TGAGGGCCGAAATATTTCACACGTTAGAAGGGCCGCAAAACGATGTTATC
TCCCCATCCCTTTCTAATGATAACCTCCTGATCAACGAGTTGGTGCGAGA
CTACCTGGACTACAGCGGCTTTATAAACGCACAAAGCGTATTTATGGTGG
AGTCCGGCCAACCTACCAACACTGGCTTAAAAAGAGAGTTCATCAAAGAA
CAGGTGCGTCATAGATGTCAGGGGCATTTTATTTAG
back to top