mRNA_H-elongata_contig848.16078.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.000e-44 Identity = 130/451 (28.82%), Postives = 208/451 (46.12%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVG----------------------------HLNKTIYRLTKVDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
K RLV +G+ Q G+ Y E YS + S+R +LA + E+ D + L +++ E Y+E+PE E + A G HL T + D CV+ + +G+ E +V ++V+D+L ++ KA + A + +KF++KD+G AR+ + I + + R L I Q Y ES+++ F R DI+ AV + RF ENPG H A +K+++YLL KD GI Y G G EAY+D+D+ D RRS+S +LML + W S Q+ A ++EAE S+ VKE + +R++ + + +VGA +++ N+ + LA N RTKHID++Y+ +R + +V + YV + Q A F+TK L +
Sbjct: 130 KARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-PEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGA-EQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGLSSK 577
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 171 bits (432), Expect = 4.540e-44 Identity = 130/451 (28.82%), Postives = 207/451 (45.90%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVG----------------------------HLNKTIYRLTKVDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
K RLV +G+ Q + Y E YS + SIR +L + + E+ D + L ++ E Y+E+PE E E A G HL + D CV+ + +G+ E +V ++V+++L ++ KA + A + +KF++KD+G AR+ L I N + R L I Q Y ES+++TF R D++ AV + RF ENPG H + +K ++YLL KD GI Y GQ G +EAY+D+D+ D RRS+S +LML + W S Q+ A ++EAE S+ VKE + +R++ + + +VGA +++ N+ + LA N RTKHID++Y+ +R +V + YV + Q A+F+TK L +
Sbjct: 163 KARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQLGTH-LEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGA-EQVGATEIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVGNEVELEYVDTKNQLADFMTKGLSSK 610
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.920e-43 Identity = 131/451 (29.05%), Postives = 213/451 (47.23%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEF---------PGAVGHLNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
K RLV +G+ Q G+ Y E YS + SIR +L + + E+ D + L ++ E Y+E+PEE +E V L +++Y L + D CV+ + +G+ E +V ++V+D+L ++ A + A + +KF++KD+G AR+ L I + + R L I Q Y ES+++ F R DI+ AV + RF ENPG H A +K+++YLL KD GI Y G G +EAY+D+D+ D RRS+S +LML + + W S Q+ A ++EAE S+ VKE + +R++ + + +VGA +++ N+ + LA N RTKHID++Y+ VR + +V++ YV + Q A+F+TK L +
Sbjct: 461 KARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGAQ-LEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGA-EQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLSSK 908
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.040e-42 Identity = 131/451 (29.05%), Postives = 212/451 (47.01%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVGH------LNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
K RLV +G+ Q G+ Y E YS + SIR +LA + + E+ D + L ++ E Y+E+ E E E A G L +++Y L + D CV+ + +G+ E +V ++V+D+L ++ KA + A + +KF++KD+G AR+ L I + + R L I Q Y ES+++ F R DI+ AV + RF ENPG H A +K+++YLL KD GI Y G G +EAY+D+D+ D RRS+S +LML + W S Q+ A ++EAE S+ VKE + +R++ + + +VGA +++ N+ + LA N TKHID++Y+ +R + +V++ YV + Q A+F+TK L +
Sbjct: 195 KARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGA-EQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLSSK 642
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3Q978_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q978_9STRA) HSP 1 Score: 166 bits (420), Expect = 8.960e-42 Identity = 127/449 (28.29%), Postives = 204/449 (45.43%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVG----------------------------HLNKTIYRLTKVDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
K RLV +G+ Q G+ Y E Y + S+R +LA + E+ D + L ++ E Y+E+PE E + A G HL + D CV+ + +G E +V ++V+D+L ++ KA + A + +KF++KD+G AR+ L I + + R L I Q Y ES+++ F R DI+ AV + RF ENPG H A +K+++YLL KD GI Y G G +EAY+++D+ D RRS+S +LML + W S Q+ A ++EAE S+ VKE + +R + + + +VG +++ N+ + LA N RTKHID++Y+ +R + +V + YV + Q A+F+TK L +
Sbjct: 363 KARLVVKGYSQRHGIDYEETYLPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLKELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNEMINKHLKSMGFEPADADPCVYTRG-EGDDECIVCLYVDDMLIASRQKAVIASVKARIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGVNLTKADEPQTEEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSNADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRHLLKDIGT-EQVGVTVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSTEVELEYVDTKNQLADFMTKGLSSK 808
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.520e-41 Identity = 131/451 (29.05%), Postives = 213/451 (47.23%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVGH------LNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVE--------------------------------------------------TFDIRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
K RLV +G+ Q G++Y E YS + SIR +LA + + E+ D + L ++ E Y+E+ E E E A G L +++Y L + D CV+ + +G+ E +V ++V+D+L ++ KA + A + +KF++KD+G AR+ L I N + R L I Q Y ES+++ + R DI+ AV + RF ENPG H A +K+++YLL KD GI Y G G +EAY+D+D+ D RRS+S +LML + W S Q+ A ++EAE S+ VKE + +R++ + + +VGA +++ N+ + LA N TKHID++Y+ +R + +V++ YV + Q A+F+TK L +
Sbjct: 439 KDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGA-EQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLSSK 886
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A438IQ82_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IQ82_VITVI) HSP 1 Score: 164 bits (414), Expect = 8.590e-41 Identity = 128/431 (29.70%), Postives = 203/431 (47.10%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEFPGA--VGHLNKTIYRLTK----------------------VDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFDIRS------------------------DIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*S---EAVKEVLRLRQ-------VQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQRFYKHA 1119
K RLV +GF Q EG+ Y + +S + S+R+I+A A D EL D + L ++D + Y+E PE + + V L K+IY L + VDQC++ KV G + ++++V+DIL + + L + F + D+G+A Y + I R+R L + Q Y++ ++E F+++S DI+ AV + R+ +PG H KA K+++YL KD+ +TY + +L + Y+DSD+G CLD+ +S S V ML AISW S Q +TAS T EAE EA L LR V +PL ++ N + + N + +KH+D+KY +V+ Q+V I +R A+ LTK L + + +H
Sbjct: 752 KARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPL------RIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVADPLTKGLPPKAYLEHV 1174
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3GLU4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GLU4_9STRA) HSP 1 Score: 150 bits (379), Expect = 6.070e-39 Identity = 97/285 (34.04%), Postives = 162/285 (56.84%), Query Frame = 1
Query: 271 DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFDIRS-----DIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
D+CV+ + +G+ E +V ++V+D+L ++ KA + A + +KF++KD+G AR+ L I + + R L I Q Y ES+++ F + V + RF ENPG H A +K+++YLL KD GI Y G G +EAY+D+D+ D RRS+S +LML + W S Q+ A ++EAE S+ VKE + +R++ + + +VGA +++ N+ + LA N RTKHID++Y+ +R + +V + Y+ + Q A+F+TK L +
Sbjct: 9 DRCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLCISQKAYTESIIKKFGQENAKPCLTPLEPVAKLSRFLENPGEKHCDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSDADWAGNQDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECIWMRRLLKDIGA-DQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYMDTKNQLADFMTKGLSSK 290
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY) HSP 1 Score: 156 bits (394), Expect = 1.940e-38 Identity = 121/444 (27.25%), Postives = 202/444 (45.50%), Query Frame = 1
Query: 1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEFPGA---VGHLNKTIYRLTKVDQCVFRKVVDGKAEV---------------------VVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFDI------------------------------------------------RSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYG-GQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQR 1104
K RL QGF QV GV Y + + AS+R++LA AA D E+ D + L D+D Y+ P + E PG + L K +Y L + + ++K+ + E+ ++V+HV+D K M+ +LG +F++ D+G+AR+ L I RNR R +++ Q Y++++++ F + R DIA AV + +F NP P H +A ++++YL +D +T+G DG + Y+D+D+ A R SIS V + AI+W SR Q + A ++EAE S+ +E+L LR + + ++ +F N+ I +A N N RTKHID++Y+ +R D+ + + Y A+ LTK L +++
Sbjct: 284 KARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQPPGF-EVPGREDWIWRLLKALYGLKQAGRLWYQKICELFDEIGLSRSCHDFGVFFLFLPGIIIIIVIHVDDCTLVTNTKRIMDDLKKQLGARFEIVDLGEARWLLGFEIHRNRATRTISLSQASYIDTVLDRFHMTDAYTLTIPMDPHVTLHGLELTDDERREMARKPYARLVGSLMYAAIGTRPDIAFAVSTLAQFMANPAPVHWEAAKRVLRYLKGTRDLRLTFGLSTDG---LTGYSDADW-ASQPHRHSISGHVFLFTSGAITWSSRKQPIIALSSTEAEYIAASDTTRELLWLRALFAELTS-SSPASIPLFSDNQSAITIAKNGLLNARTKHIDLRYHFIREVLDSGRATLDYCPTNDMVADLLTKALVRRK 721
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE) HSP 1 Score: 155 bits (393), Expect = 4.700e-38 Identity = 112/397 (28.21%), Postives = 190/397 (47.86%), Query Frame = 1
Query: 25 FWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEFPGAVGHLNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQH---LYVESMVETFDIRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYG-GQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQRFYKHANFI 1128
F + EGV + E +S P+ SIR++ A A D +L HFDAEQ +++++D +I +P G V L +++Y L + D CV R + G +VVV+HV+DI + + A ++ KF + + + + + E ++D+ L M R DI +AVRAV R+ P H +A + ++ ++ +GIT+ G G ME + DSDF RRS+S A++M + + R Q+ ++EAE S+ +KE + LR + + + P VG V++ N LA+ + +KHID++++ +R + ++V+ R + Q A+FLTKPL K+ F H +F+
Sbjct: 593 FEEREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQAVAEKIVAKFGVTTDKETPMVVGLKLEQY-DADEPDVDEPFRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARGEFKVVHARSDLQRADFLTKPLPKETFCAHRDFV 988 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig848.16078.1 >prot_H-elongata_contig848.16078.1 ID=prot_H-elongata_contig848.16078.1|Name=mRNA_H-elongata_contig848.16078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp MENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPback to top mRNA from alignment at H-elongata_contig848:11110..12450+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig848.16078.1 ID=mRNA_H-elongata_contig848.16078.1|Name=mRNA_H-elongata_contig848.16078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-elongata_contig848:11110..12450+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig848:11110..12450+ >mRNA_H-elongata_contig848.16078.1 ID=mRNA_H-elongata_contig848.16078.1|Name=mRNA_H-elongata_contig848.16078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig848:11110..12450+ (Himanthalia elongata Himel1 dioecious)back to top |