mRNA_H-elongata_contig84798.16077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84798.16077.1
Unique NamemRNA_H-elongata_contig84798.16077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84798.16077.1 vs. uniprot
Match: D7FQ48_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ48_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 4.480e-82
Identity = 177/324 (54.63%), Postives = 209/324 (64.51%), Query Frame = 1 
Query:    1 ALDAVGTLSPPNSTTVRASAIRQGDRLPPXXXXXXXXXXXXXXXXXXSAPLRAAFVAQVLSVPLLPYRIGADGVNLLLRERAVAFVDCLEDFLAEMKASRA---ARGYAGGNAAA---------------------ALGSKPHWDEAFGLPPSPVACCSTETFLLGNVVALGTKLPVDGGNGK--------GAVVVASRVARGQREFMRTVTGLLELKAIPESLLTDRQAITWRE-----GGDGGGTSMTALAVPQAVQNQVRLLVSDRWIRAASRQALEGVNERLLKRCSEEERRENEQTLEVSAANLAIASVQSYRHEVLEG 861
            ALDAVG+LSP  +  + A+ + +                  XXXXXX+ PLRA+FVA++LSVPLLP R+G DGVNLLL+ERA AF DCL DF  EM A+ A   A G  GG   A                       G   HW  AF LPP PV+CCSTE FLLGNVVA+GTK+ V+G            G  + AS   RGQREFMR VT LLEL+AIPESLLTDRQAITW+      GG  GGTSMTALAVPQAVQ+QVRLLVSDRW+R+AS  AL+GVNE+ L+RC+E ER EN++ LE +AANLA+ASVQS+R E   G
Sbjct:  296 ALDAVGSLSPAATVALAAAPLSRSPXX--------------XXXXXXAVPLRASFVAEILSVPLLPSRLGVDGVNLLLKERAEAFFDCLRDFRVEMVAAAAYAAADGEGGGKGRAKGXXXXXSDPGAEEGKRRSRGGAGGAGHWG-AFHLPPPPVSCCSTEAFLLGNVVAMGTKISVEGXXXXXXXXXIDAGGPMTASAARRGQREFMRAVTSLLELRAIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEKSLQRCTEAERLENKEVLESNAANLAVASVQSHRAEANRG 604
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BLAST of mRNA_H-elongata_contig84798.16077.1 vs. uniprot
Match: A0A6H5KX73_9PHAE (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX73_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.330e-41
Identity = 110/242 (45.45%), Postives = 128/242 (52.89%), Query Frame = 1 
Query:    1 ALDAVGTLSPPNSTTVRASAIRQGDRLPPXXXXXXXXXXXXXXXXXXSAPLRAAFVAQVLSVPLLPYRIGADGVNLLLRERAVAFVDCLEDFLAEMKASRAARGYAGGNAAA------------------------ALGSKPHWDEAFGLPPSPVACCSTETFLLGNVVALGTKLPVDGGNG--------KGAVVVASRVARGQREFMRTVTGLLELKAIPESLLTDRQAITWREG-GDGGG 627
            ALDAVG+LSP  +  + AS +    R PP                  + PLRA+FVA++LSVPLLP R+G DGVNLLL+ERA AF DCL DF  EM A+ AA G  GG   A                          G   HW   F LPP PV+CCSTE FLLGNVVA+GTK+  +GG G         GA + AS   RGQREFMR VT LLEL+          +  TWR G G GGG
Sbjct:  296 ALDAVGSLSPAATVALAASPL---SRSPPPPSAATA-----------AVPLRASFVAEILSVPLLPSRLGVDGVNLLLKERAEAFFDCLRDFRVEMVAAAAADGERGGKGRAQSAXXXXXXXXGPGAEEGNMRSRGGAGGAGHWG-TFHLPPPPVSCCSTEAFLLGNVVAMGTKISAEGGGGVGGGGRINAGAPMTASAARRGQREFMRAVTSLLELRV---------RGQTWRGGVGVGGG 513
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BLAST of mRNA_H-elongata_contig84798.16077.1 vs. uniprot
Match: A0A6H5KXV6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV6_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.720e-35
Identity = 74/106 (69.81%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:  559 AIPESLLTDRQAITWRE-----GGDGGGTSMTALAVPQAVQNQVRLLVSDRWIRAASRQALEGVNERLLKRCSEEERRENEQTLEVSAANLAIASVQSYRHEVLEG 861
            AIPESLLTDRQAITW+      GG  GGTSMTALAVPQAVQ+QVRLLVSDRW+R+AS  AL+GVNE+ L+RC+E ER EN++ LE +AANLA+ASVQS+R E   G
Sbjct:    2 AIPESLLTDRQAITWQSQDGASGGGSGGTSMTALAVPQAVQDQVRLLVSDRWVRSASMLALDGVNEKSLQRCTEAERLENKEVLESNAANLAVASVQSHRAEANRG 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84798.16077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQ48_ECTSI4.480e-8254.63HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5KX73_9PHAE1.330e-4145.45HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5KXV6_9PHAE4.720e-3569.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84798contigH-elongata_contig84798:186..2547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size870
Cds size870
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84798.16077.1prot_H-elongata_contig84798.16077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84798 186..2547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.4826849-CDS-H-elongata_contig84798:185..7431622931251.4826849-CDS-H-elongata_contig84798:185..743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84798 186..743 +
1691679760.2236805-CDS-H-elongata_contig84798:185..7431691679760.2236805-CDS-H-elongata_contig84798:185..743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84798 186..743 +
1622931251.5051625-CDS-H-elongata_contig84798:1375..14891622931251.5051625-CDS-H-elongata_contig84798:1375..1489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84798 1376..1489 +
1691679760.2358158-CDS-H-elongata_contig84798:1375..14891691679760.2358158-CDS-H-elongata_contig84798:1375..1489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84798 1376..1489 +
1622931251.5220609-CDS-H-elongata_contig84798:2349..25471622931251.5220609-CDS-H-elongata_contig84798:2349..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84798 2350..2547 +
1691679760.2446382-CDS-H-elongata_contig84798:2349..25471691679760.2446382-CDS-H-elongata_contig84798:2349..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84798 2350..2547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84798.16077.1

>prot_H-elongata_contig84798.16077.1 ID=prot_H-elongata_contig84798.16077.1|Name=mRNA_H-elongata_contig84798.16077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp
ALDAVGTLSPPNSTTVRASAIRQGDRLPPPPHDPPGATGSPAAAAAASAP
LRAAFVAQVLSVPLLPYRIGADGVNLLLRERAVAFVDCLEDFLAEMKASR
AARGYAGGNAAAALGSKPHWDEAFGLPPSPVACCSTETFLLGNVVALGTK
LPVDGGNGKGAVVVASRVARGQREFMRTVTGLLELKAIPESLLTDRQAIT
WREGGDGGGTSMTALAVPQAVQNQVRLLVSDRWIRAASRQALEGVNERLL
KRCSEEERRENEQTLEVSAANLAIASVQSYRHEVLEGNG*
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mRNA from alignment at H-elongata_contig84798:186..2547+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84798.16077.1 ID=mRNA_H-elongata_contig84798.16077.1|Name=mRNA_H-elongata_contig84798.16077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2362bp|location=Sequence derived from alignment at H-elongata_contig84798:186..2547+ (Himanthalia elongata Himel1 dioecious)
GCTCTCGACGCCGTAGGTACGCTATCGCCGCCCAACTCGACAACGGTCAG
GGCTTCCGCGATACGACAAGGAGATCGCCTCCCACCTCCGCCACATGATC
CACCAGGTGCCACCGGATCTCCCGCTGCGGCCGCGGCTGCTTCAGCGCCC
CTTCGTGCGGCGTTCGTGGCACAAGTCCTGTCGGTGCCTCTGCTCCCCTA
CCGCATCGGCGCCGACGGCGTGAACCTCCTGCTCAGGGAGCGCGCAGTAG
CATTCGTAGATTGCCTCGAAGACTTCCTTGCGGAAATGAAAGCATCTCGG
GCCGCCCGGGGATATGCCGGTGGGAACGCAGCAGCAGCATTGGGGTCAAA
ACCCCACTGGGACGAGGCGTTTGGCCTGCCCCCGTCTCCGGTGGCTTGCT
GCTCTACGGAGACCTTCCTGCTGGGCAACGTAGTCGCGTTGGGGACAAAG
CTTCCCGTGGATGGAGGCAACGGCAAGGGGGCCGTCGTGGTGGCGAGCAG
GGTTGCCAGGGGACAGCGGGAGTTCATGCGGACGGTCACGGGTTTGTTGG
AACTAAAGGTGCCATGATATATATATATATATATTATTTCTTGCCTTTTC
TATACAAAGCGTGGGGTTTTCAACATATATATTATTTTGTGAAGAGGAGA
GGAGACGCGCGTGCACCTTCATGGCCTGTGCGCATCTCTTTGGCGTTTTC
ATTCCGAAGGGGACCCTAGCTCGTAGGGCTGCGCCATGCTCGTTGTGGTC
ATTTCGTGATTGATATAACTTTATAGATAGCGATGAGATAGATAAAGATA
TCCACTCCTGGCGGCAAAAGGCGGCAAAAGGTGGAGGCCTAGAACGAGCA
GAAAATTGATTCCGAGTGTGTCAGGCGTGTACTCTTTTTTTTAATCTTAT
TGTGTCGCATTGTCGCATAATTACAAACATTCGCACGAGTGTTCGAGTGT
TTGAAATCTCGAAGCAAGGAAGAGCATCTAAATTTGGGTATACCTCGTCG
GATACATCCCCGTTCTTATAATATTGTTAGTGTGAAAGGGGTTGGAATAG
AGAGGCCTGATCAGAGAAGAGCTTCCAAACCAGCAGGCATGTGCCCGATT
GCGCTTCCGTAGGTAGAGTAATGCACTGATCCTCATAACGCCTCCCTCCC
GGCGATCTCTCCCTCTCTCTCTCTCTTCGATCTGGAGAAGGCCATCCCCG
AGAGTCTCCTGACCGACCGACAGGCCATAACGTGGCGAGAGGGAGGAGAC
GGGGGCGGCACGTCGATGACGGCACTGGCCGTTCCTCAGGCGGTACAGAA
CCAGGTATGCGATGCGATGCGGTAACACTGCTAATACACCGATTAATTGT
TTATCAATCGTGCTGTTTATCTTGAGGGTGATTTGCAATCGAGGATGTAT
AGTGGGTGTGGGAAAAGAGAGGCGCGTAATCATTGGGTCCATGGGGTTTT
ACGGTACCTGAATAGGATGCACCCGTTACTCAACCTACCTTGAGGACTGC
TGGCTCTGTGCCGGTAGCCTCTCGGTGTTAAACGCCATCGATACGCAATT
GCGTGGCCTGATAAAATTGGGATTGACCCGATGGCGGTTTGACGGTAGAG
ATGAACATTGTCGCGGAAAACGAGAGGATCCAGAGGATTCCGTGAATACG
CACCAGGTTCAGCATGAGTTGAGAGAATGGGCAGACTGGTGCGGGACTGG
ACGGCCGAACCCGTCTCGCGAGATCAATTTCTCAGACGCGAACGGAGACA
GGGAAAATTATGTTTTCCTTTGTTCAGCTGACCACAGGCAGGAGGCAACT
TAATCCGGTCGATGCTTACTCTGCTATGTGTGATGACGTCATGACCAGAC
AAAGTAAATGGGCCGCTAAATTCGTCATCGTTACACGCTGAATTATGGAG
TGTAGTGAAGACGACTAATTGTGCTAAAAATGACGTGGGTTAGGTTTTCG
CGTTCACACACCCACGGCGCTCACACCGTCATCCCCTCCCCCCTCTTTCC
TTCCTCTCCGATATTGATGTGCTGATCGCCATCCGCTATACCCCGTTCCC
CGATTTCTAGAAAGTCTATTTTATTTTATTTTTTACGTCGGAATGGTTTG
TGAAATCTGGTCAATGTATCTCTCTCATTGTCTTTGTGTTGCCTTTATGT
TTGTCATTTGGTAGGTTCGTCTGCTAGTATCGGACCGATGGATCCGCGCG
GCGAGTCGGCAGGCCCTCGAGGGAGTGAACGAGAGACTGCTGAAGCGTTG
CTCAGAGGAAGAACGCCGGGAAAACGAGCAAACTCTCGAGGTCTCCGCCG
CTAACCTCGCCATCGCCAGCGTCCAGAGCTACCGCCACGAGGTACTGGAA
GGAAATGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig84798:186..2547+

>mRNA_H-elongata_contig84798.16077.1 ID=mRNA_H-elongata_contig84798.16077.1|Name=mRNA_H-elongata_contig84798.16077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig84798:186..2547+ (Himanthalia elongata Himel1 dioecious)
GCTCTCGACGCCGTAGGTACGCTATCGCCGCCCAACTCGACAACGGTCAG
GGCTTCCGCGATACGACAAGGAGATCGCCTCCCACCTCCGCCACATGATC
CACCAGGTGCCACCGGATCTCCCGCTGCGGCCGCGGCTGCTTCAGCGCCC
CTTCGTGCGGCGTTCGTGGCACAAGTCCTGTCGGTGCCTCTGCTCCCCTA
CCGCATCGGCGCCGACGGCGTGAACCTCCTGCTCAGGGAGCGCGCAGTAG
CATTCGTAGATTGCCTCGAAGACTTCCTTGCGGAAATGAAAGCATCTCGG
GCCGCCCGGGGATATGCCGGTGGGAACGCAGCAGCAGCATTGGGGTCAAA
ACCCCACTGGGACGAGGCGTTTGGCCTGCCCCCGTCTCCGGTGGCTTGCT
GCTCTACGGAGACCTTCCTGCTGGGCAACGTAGTCGCGTTGGGGACAAAG
CTTCCCGTGGATGGAGGCAACGGCAAGGGGGCCGTCGTGGTGGCGAGCAG
GGTTGCCAGGGGACAGCGGGAGTTCATGCGGACGGTCACGGGTTTGTTGG
AACTAAAGGCTCTCGACGCCGTAGGTACGCTATCGCCGCCCAACTCGACA
ACGGTCAGGGCTTCCGCGATACGACAAGGAGATCGCCTCCCACCTCCGCC
ACATGATCCACCAGGTGCCACCGGATCTCCCGCTGCGGCCGCGGCTGCTT
CAGCGCCCCTTCGTGCGGCGTTCGTGGCACAAGTCCTGTCGGTGCCTCTG
CTCCCCTACCGCATCGGCGCCGACGGCGTGAACCTCCTGCTCAGGGAGCG
CGCAGTAGCATTCGTAGATTGCCTCGAAGACTTCCTTGCGGAAATGAAAG
CATCTCGGGCCGCCCGGGGATATGCCGGTGGGAACGCAGCAGCAGCATTG
GGGTCAAAACCCCACTGGGACGAGGCGTTTGGCCTGCCCCCGTCTCCGGT
GGCTTGCTGCTCTACGGAGACCTTCCTGCTGGGCAACGTAGTCGCGTTGG
GGACAAAGCTTCCCGTGGATGGAGGCAACGGCAAGGGGGCCGTCGTGGTG
GCGAGCAGGGTTGCCAGGGGACAGCGGGAGTTCATGCGGACGGTCACGGG
TTTGTTGGAACTAAAGGCCATCCCCGAGAGTCTCCTGACCGACCGACAGG
CCATAACGTGGCGAGAGGGAGGAGACGGGGGCGGCACGTCGATGACGGCA
CTGGCCGTTCCTCAGGCGGTACAGAACCAGGCCATCCCCGAGAGTCTCCT
GACCGACCGACAGGCCATAACGTGGCGAGAGGGAGGAGACGGGGGCGGCA
CGTCGATGACGGCACTGGCCGTTCCTCAGGCGGTACAGAACCAGGTTCGT
CTGCTAGTATCGGACCGATGGATCCGCGCGGCGAGTCGGCAGGCCCTCGA
GGGAGTGAACGAGAGACTGCTGAAGCGTTGCTCAGAGGAAGAACGCCGGG
AAAACGAGCAAACTCTCGAGGTCTCCGCCGCTAACCTCGCCATCGCCAGC
GTCCAGAGCTACCGCCACGAGGTACTGGAAGGAAATGGTTGAGTTCGTCT
GCTAGTATCGGACCGATGGATCCGCGCGGCGAGTCGGCAGGCCCTCGAGG
GAGTGAACGAGAGACTGCTGAAGCGTTGCTCAGAGGAAGAACGCCGGGAA
AACGAGCAAACTCTCGAGGTCTCCGCCGCTAACCTCGCCATCGCCAGCGT
CCAGAGCTACCGCCACGAGGTACTGGAAGGAAATGGTTGA
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