mRNA_H-elongata_contig84792.16076.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.500e-35 Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
+V+DSLT K+C KLS QILA NLTPAMYATQWFLTAFTQRFPYD VTRVWD+FLLEDWK+FYRVCLALFK
Sbjct: 178 FVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 247
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.030e-33 Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
+V+DSLT K+C KLS QILA NLTPAMYATQWFLTAFTQRFPYD VTRVWD+FLLEDWK+FYRVCLALFK
Sbjct: 531 FVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 600
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A835Z8H8_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H8_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 8.700e-21 Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
YV+D L K+ +L + + ++ P MYA WF+T FTQ FPYD VTRVWDIFL EDWKI YRVCLALFK
Sbjct: 531 YVMDGLALKFTPRLHNHLKSNDIDPTMYAHPWFMTCFTQSFPYDLVTRVWDIFLKEDWKIMYRVCLALFK 600
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.620e-20 Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
+V+DSLT+K+ KL + ++ P MYA WF+T FTQ FPY+ TR WD+FL EDWKI YRVCLALFK
Sbjct: 514 HVMDSLTEKFVPKLFRHLQKHDIQPTMYAHPWFITCFTQAFPYELCTRTWDVFLEEDWKIMYRVCLALFK 583
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A225W6Z9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6Z9_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.310e-17 Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
+V + L +Y +LSA + + L P MY TQWFLT FT FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct: 251 FVFEGLFKQYMPQLSAHLESEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALLK 320
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A3R6VS27_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VS27_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 5.050e-16 Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 28 YCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
Y KL+ + A L P MYATQWF+T ++ FP++FVTRVWDI+L E WKI YRV +AL K
Sbjct: 95 YVPKLTDHLAAEGLHPTMYATQWFVTLYSYSFPFEFVTRVWDIYLHEGWKIVYRVAVALLK 155
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A8J5IBD6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IBD6_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.430e-16 Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
+V + L + +LSA + L P MY TQWFLT FT FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct: 202 FVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDTFLHEGWKVIYRVALALMK 271
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A485LF29_9STRA (Aste57867_20420 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF29_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 8.830e-16 Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 4 VVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
+ + T Y KL+ + A L P MYATQWF+T ++ FP++FVTRVWDIFL E WKI YR+ +AL K
Sbjct: 499 IFEQCTKTYLPKLTEHMDAEGLHPTMYATQWFITLYSYSFPFEFVTRVWDIFLHEGWKIVYRIAIALLK 567
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: H3GE06_PHYRM (Rab-GAP TBC domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE06_PHYRM) HSP 1 Score: 79.0 bits (193), Expect = 1.100e-15 Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
+V +L + +LSA + L P MY TQWFLT FT FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct: 251 FVFQALLKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDSFLHEGWKVIYRVALALLK 320
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: D0MU62_PHYIT (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MU62_PHYIT) HSP 1 Score: 79.0 bits (193), Expect = 1.190e-15 Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 210
++ + L + +LSA + L P MY TQWFLT FT FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct: 255 FIFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALMK 324 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84792.16076.1 >prot_H-elongata_contig84792.16076.1 ID=prot_H-elongata_contig84792.16076.1|Name=mRNA_H-elongata_contig84792.16076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWback to top mRNA from alignment at H-elongata_contig84792:1831..2043+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84792.16076.1 ID=mRNA_H-elongata_contig84792.16076.1|Name=mRNA_H-elongata_contig84792.16076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig84792:1831..2043+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84792:1831..2043+ >mRNA_H-elongata_contig84792.16076.1 ID=mRNA_H-elongata_contig84792.16076.1|Name=mRNA_H-elongata_contig84792.16076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig84792:1831..2043+ (Himanthalia elongata Himel1 dioecious)back to top |