mRNA_H-elongata_contig84709.16070.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84709.16070.1
Unique NamemRNA_H-elongata_contig84709.16070.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: D8LCG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG1_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.140e-31
Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = 1
Query:    1 QAAANEVTHRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQPGSD 216
            QAAA + THR+ALKAALN+CVRLCVVAPTVNINL+D  RSFCSGLPEE+IRAF+E S+LPRFTRVLLQPGS+
Sbjct:  435 QAAAADATHRKALKAALNNCVRLCVVAPTVNINLDDRSRSFCSGLPEERIRAFVEESVLPRFTRVLLQPGSE 506          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: A0A7S3XWJ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWJ8_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 4.790e-13
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   25 HRRALKAALNSCVRLCVVAPTVNINLNDHRRSFC--SGLPEEKIRAFIESSLLPRFTRVLLQPGS 213
            H++AL+AALNS VRLCVVAPTVN+NL          + LPE KIR+F+E  +LP+F R+ LQ  S
Sbjct:  124 HKQALEAALNSVVRLCVVAPTVNVNLAAPAAPLAMKAPLPESKIRSFVEGEILPKFARIFLQRDS 188          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: A0A6G0XE29_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE29_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.930e-8
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   22 THRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQ 204
            TH +AL+ A+ S VRLCVVAPTVN++L+       S LP++ IR  +++ +LP F+ + LQ
Sbjct:  571 THTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKSTLPKDAIRTIVQNDILPVFSSIFLQ 631          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: A0A485KJ64_9STRA (Aste57867_8007 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJ64_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   22 THRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQ 204
            TH ++L+ A+ S VRLCVVAPTVN++L+       S LP++ IR  ++  +LP F+ + LQ
Sbjct:  107 THAKSLEKAMQSLVRLCVVAPTVNVHLSGQVLPCKSVLPKDAIRTIVQKDILPVFSSIFLQ 167          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: A0A1W0A4L8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4L8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.890e-8
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   22 THRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQ 204
            TH +AL+ A+ S VRLCVVAPTVN++L+       S LP + IR+ ++  +LP F+ + LQ
Sbjct:  444 THTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKSVLPTDAIRSIVQKDILPVFSSIFLQ 504          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: W4FDP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDP1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.760e-8
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   16 EVTHRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQ 204
            + TH +AL+ A+ S VRLCVVAPTVN++L+       + LP++ IR  ++  +LP F+ + LQ
Sbjct:  607 QATHTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKTVLPKDAIRTIVQRDILPVFSSIFLQ 669          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: A0A024UK10_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK10_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.260e-7
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   22 THRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQ 204
            TH +AL+ A+ S VRLCVVAPTVN++L+       + LP++ IR  ++  +LP F+ + LQ
Sbjct:  606 THTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKTVLPKDAIRTIVQRDILPVFSSIFLQ 666          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: A0A7S3HDY8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDY8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.700e-7
Identity = 22/63 (34.92%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   28 RRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQPGSD 216
            ++AL+ A+ + VRLCVVAPTVN++++D +  F +GL ++ +++F+ + +L +++ +  Q G +
Sbjct:  399 KKALEKAITASVRLCVVAPTVNVHVSDKKLKFKAGLSQDSLKSFLSNEVLEKYSFLFKQKGEN 461          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: T0S8Y2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S8Y2_SAPDV)

HSP 1 Score: 55.8 bits (133), Expect = 2.360e-7
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   25 HRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQ 204
            H +AL+ A+ S VRLCVVAPTVN++L+       S LP + IR+ ++  +LP F+ + LQ
Sbjct:  566 HTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKSVLPTDAIRSIVQKDILPVFSSIFLQ 625          
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Match: A0A7S3AGN7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AGN7_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 3.290e-7
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   31 RALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKIRAFIESSLLPRFTRVLLQ 204
            R L+ AL S VRLCVVAPTVN+       ++ + +P ++I+  +E  +LP F +V  Q
Sbjct:   44 RGLEEALQSSVRLCVVAPTVNVTFGGQHTNYRATMPRDRIQTILEGQILPGFAQVFTQ 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84709.16070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LCG1_ECTSI3.140e-3181.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XWJ8_HETAK4.790e-1355.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0XE29_9STRA1.930e-845.90Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KJ64_9STRA2.910e-844.26Aste57867_8007 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1W0A4L8_9STRA4.890e-845.90Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4FDP1_9STRA6.760e-842.86Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024UK10_9STRA1.260e-744.26Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S3HDY8_9STRA1.700e-734.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
T0S8Y2_SAPDV2.360e-745.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7S3AGN7_9EUKA3.290e-741.38Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84709contigH-elongata_contig84709:905..1120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue3.7e-26
Seed eggNOG ortholog2880.D8LCG1
EggNOG OGs2D168@1,2SGVV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.072286-CDS-H-elongata_contig84709:904..11201622931251.072286-CDS-H-elongata_contig84709:904..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84709 905..1120 -
1691679760.0680993-CDS-H-elongata_contig84709:904..11201691679760.0680993-CDS-H-elongata_contig84709:904..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84709 905..1120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84709.16070.1prot_H-elongata_contig84709.16070.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84709 905..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84709.16070.1

>prot_H-elongata_contig84709.16070.1 ID=prot_H-elongata_contig84709.16070.1|Name=mRNA_H-elongata_contig84709.16070.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
QAAANEVTHRRALKAALNSCVRLCVVAPTVNINLNDHRRSFCSGLPEEKI
RAFIESSLLPRFTRVLLQPGSD
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mRNA from alignment at H-elongata_contig84709:905..1120-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84709.16070.1 ID=mRNA_H-elongata_contig84709.16070.1|Name=mRNA_H-elongata_contig84709.16070.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig84709:905..1120- (Himanthalia elongata Himel1 dioecious)
CAGGCGGCGGCAAATGAAGTCACCCACAGAAGAGCGTTGAAGGCGGCGCT CAATAGCTGCGTACGCCTATGCGTCGTCGCTCCTACCGTGAACATCAACC TCAACGACCATCGCCGCTCCTTCTGCTCCGGATTGCCCGAGGAAAAAATC CGTGCCTTCATCGAGAGTTCCCTGCTACCACGGTTCACTCGAGTACTTCT TCAACCTGGGTCCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig84709:905..1120-

>mRNA_H-elongata_contig84709.16070.1 ID=mRNA_H-elongata_contig84709.16070.1|Name=mRNA_H-elongata_contig84709.16070.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig84709:905..1120- (Himanthalia elongata Himel1 dioecious)
CAGGCGGCGGCAAATGAAGTCACCCACAGAAGAGCGTTGAAGGCGGCGCT
CAATAGCTGCGTACGCCTATGCGTCGTCGCTCCTACCGTGAACATCAACC
TCAACGACCATCGCCGCTCCTTCTGCTCCGGATTGCCCGAGGAAAAAATC
CGTGCCTTCATCGAGAGTTCCCTGCTACCACGGTTCACTCGAGTACTTCT
TCAACCTGGGTCCGACCAGGCGGCGGCAAATGAAGTCACCCACAGAAGAG
CGTTGAAGGCGGCGCTCAATAGCTGCGTACGCCTATGCGTCGTCGCTCCT
ACCGTGAACATCAACCTCAACGACCATCGCCGCTCCTTCTGCTCCGGATT
GCCCGAGGAAAAAATCCGTGCCTTCATCGAGAGTTCCCTGCTACCACGGT
TCACTCGAGTACTTCTTCAACCTGGGTCCGAC
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