mRNA_H-elongata_contig84645.16067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84645.16067.1
Unique NamemRNA_H-elongata_contig84645.16067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: D8LSL3_ECTSI (Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL3_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 9.730e-31
Identity = 49/68 (72.06%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 AVCVPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIEN 204
            A+C+PMDG+HLYRRELD +P+P EA+RRRGAHWTFDG RF+ E+ +A+++GRGSFPGFDHA GDP+EN
Sbjct:  364 AICLPMDGYHLYRRELDLLPDPREAHRRRGAHWTFDGRRFLSELGDARRSGRGSFPGFDHARGDPVEN 431
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BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: A0A6H5L6F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.670e-30
Identity = 48/68 (70.59%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 AVCVPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIEN 204
            A+C+PMDG+HLYRRELD +P+P EA+RRRGAHWTFDG RF+ E+ +A+++G GSFPGFDHA GDP+EN
Sbjct:  229 AICLPMDGYHLYRRELDLLPDPREAHRRRGAHWTFDGRRFLSELGDARRSGSGSFPGFDHARGDPVEN 296
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BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: A0A835YY10_9STRA (Phosphoribulokinase/uridine kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY10_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.130e-26
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   10 VPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIEN 204
            V MDGFHLYRRELDAMP+P EA+R+RGAHWTFD  +F++ + E +  GRG+FP FDH +GDP+E+
Sbjct:   35 VGMDGFHLYRRELDAMPDPAEAHRKRGAHWTFDAPKFLQRLREVRANGRGAFPSFDHCVGDPVED 99
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BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: A0A2V0NSY4_9CHLO (Uridine kinase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NSY4_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 4.490e-23
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 AVCVPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIE 201
            AV VPMDGFHLY+R+LDAMP+PEEAY RRGAHWTFD + F+  V   +++G    P FDH +GDP++
Sbjct:  153 AVVVPMDGFHLYKRQLDAMPDPEEAYARRGAHWTFDADAFVACVRRIRESGAARVPSFDHGVGDPVD 219
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BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: A0A7S0UY95_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0UY95_9CRYP)

HSP 1 Score: 95.5 bits (236), Expect = 8.630e-23
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   10 VPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIE 201
            +PMDGFH YRRELDAM N EEA+ RRGAHWTF+  R + E+  A+KTG    P FDHA+GDP+E
Sbjct:   65 LPMDGFHFYRRELDAMANSEEAHARRGAHWTFNATRMVAELQSARKTGARRMPSFDHAVGDPVE 128
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BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: I0YTF9_COCSC (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YTF9_COCSC)

HSP 1 Score: 94.4 bits (233), Expect = 1.400e-22
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 AVCVPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIE 201
            A+ VPMDGFHL R++LD +PNPEEA+ RRGA WTFD   F+  + E +  G G +P FDHA+GDP+E
Sbjct:   33 AIHVPMDGFHLTRKQLDDLPNPEEAHMRRGADWTFDAHEFVEAIREIRHAGCGQYPSFDHAVGDPVE 99
[Close]
BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: A0A7J7QPK4_9CHLO (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QPK4_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 2.580e-22
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 AVCVPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIEN 204
            A   PMDGFH Y+++LDAMP+P+EAY RRGAHWTFDG  F+  V   K+ G  S P FDH +GDP+E+
Sbjct:  131 AAVAPMDGFHYYKQQLDAMPDPQEAYARRGAHWTFDGNAFVAAVRRLKQHGAASLPSFDHGVGDPVED 198
[Close]
BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: A0A383VR80_TETOB (PRK domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VR80_TETOB)

HSP 1 Score: 95.5 bits (236), Expect = 3.010e-22
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 AVCVPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIEN 204
            A   PMDGFH Y+++LD+MP P+EAY RRGAHWTFDG  F+  +   K+ G  S P FDH +GDPIE+
Sbjct:  107 AAVAPMDGFHYYKKQLDSMPEPQEAYARRGAHWTFDGAAFVAAIRRLKQHGAASLPSFDHGVGDPIED 174
[Close]
BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: A0A7S1DGT6_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DGT6_HEMAN)

HSP 1 Score: 95.5 bits (236), Expect = 5.020e-22
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   10 VPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIEN 204
            +PMDGFH YR ELDAM N +EA++RRGAHWTF+    + ++  A++TGRG FP FDHA+GDP+E+
Sbjct:  168 LPMDGFHFYRHELDAMDNSDEAHKRRGAHWTFNATLLVEQLQNARETGRGWFPSFDHALGDPVED 232
[Close]
BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Match: F2JVH7_MARM1 (Phosphoribulokinase/uridine kinase family protein n=2 Tax=Marinomonas TaxID=28253 RepID=F2JVH7_MARM1)

HSP 1 Score: 90.1 bits (222), Expect = 7.580e-21
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    4 VCVPMDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSFPGFDHAIGDPIEN 204
            V +PMDG+HLYR +LD MPN EEAY RRGA +TFD  R + E+  AK  G G FP FDH  GDPIEN
Sbjct:   51 VIIPMDGYHLYRHQLDQMPNREEAYIRRGAPFTFDAVRLVLELVAAKHNGSGVFPSFDHHKGDPIEN 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84645.16067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSL3_ECTSI9.730e-3172.06Phosphoribulokinase/uridine kinase family protein ... [more]
A0A6H5L6F9_9PHAE1.670e-3070.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YY10_9STRA3.130e-2664.62Phosphoribulokinase/uridine kinase (Fragment) n=1 ... [more]
A0A2V0NSY4_9CHLO4.490e-2361.19Uridine kinase n=1 Tax=Raphidocelis subcapitata Ta... [more]
A0A7S0UY95_9CRYP8.630e-2364.06Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
I0YTF9_COCSC1.400e-2258.21p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7J7QPK4_9CHLO2.580e-2258.82P-loop containing nucleoside triphosphate hydrolas... [more]
A0A383VR80_TETOB3.010e-2257.35PRK domain-containing protein n=1 Tax=Tetradesmus ... [more]
A0A7S1DGT6_HEMAN5.020e-2260.00Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
F2JVH7_MARM17.580e-2162.69Phosphoribulokinase/uridine kinase family protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84645contigH-elongata_contig84645:567..1241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.3e-23
Seed eggNOG ortholog2880.D8LSL3
Preferred nameCAMKMT
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K18826,ko:K21804
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008277,GO:0008757,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016043,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018025,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031072,GO:0031323,GO:0031326,GO:0032101,GO:0032259,GO:0032268,GO:0032991,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.calmodulin-lysine N-methyltransferase activity
EggNOG OGsCOG1072@1,KOG2702@2759,KOG3201@1,KOG3201@2759
EC2.1.1.60
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-09_002060.1
Exons2
Model size204
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84645.16067.1prot_H-elongata_contig84645.16067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84645 582..1241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.6418066-UTR-H-elongata_contig84645:566..5811622931250.6418066-UTR-H-elongata_contig84645:566..581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84645 567..581 +
1691679759.8145528-UTR-H-elongata_contig84645:566..5811691679759.8145528-UTR-H-elongata_contig84645:566..581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84645 567..581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.662714-CDS-H-elongata_contig84645:581..6041622931250.662714-CDS-H-elongata_contig84645:581..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84645 582..604 +
1691679759.8327806-CDS-H-elongata_contig84645:581..6041691679759.8327806-CDS-H-elongata_contig84645:581..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84645 582..604 +
1622931250.6831982-CDS-H-elongata_contig84645:1075..12411622931250.6831982-CDS-H-elongata_contig84645:1075..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84645 1076..1241 +
1691679759.8517504-CDS-H-elongata_contig84645:1075..12411691679759.8517504-CDS-H-elongata_contig84645:1075..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84645 1076..1241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84645.16067.1

>prot_H-elongata_contig84645.16067.1 ID=prot_H-elongata_contig84645.16067.1|Name=mRNA_H-elongata_contig84645.16067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MDGFHLYRRELDAMPNPEEAYRRRGAHWTFDGERFMREVAEAKKTGRGSF
PGFDHAIGDPIEN
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mRNA from alignment at H-elongata_contig84645:567..1241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84645.16067.1 ID=mRNA_H-elongata_contig84645.16067.1|Name=mRNA_H-elongata_contig84645.16067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig84645:567..1241+ (Himanthalia elongata Himel1 dioecious)
GCGGTTTGCGTGCCCATGGATGGCTTCCACCTTTACCGGTGCGCCTGTAT
TTCCGGCGAAACACGCTTTTTAGAGTGAAAACCCCATCCAAAACTGAATC
GTTGTGTAGCGGGGAGCGGGGGGAGGGGGTATGCTCCATTCCGCAAATCG
CCGTTAACAAGTGTGTCCCAAGCATATTGTCTTGTCCCTTGTTCTCTTGC
TTCCCCCACCCCCAGAACGCCCTCCCTTTCCCCGTCAATACCCCCCACGC
ACACCACGTCAAAAATATATCTTCCTCTTTTCGCCTGACCAACGGCAAAC
GCCTCCCCCATTCGTATCAATCTCGTACGGGCCGGGTCTGGGATCGCGTG
GCCCCCCTAACCCTAACCCTACCATATACGAGCGAGTGCTGTCCGCGGAG
AAAGGTGGGAGGGAGTTCTAGTTGGAGGCATTCAGTACATTGCCCATCAT
CGAACGAACGAATGATGGTTCCAACCACCCTCCAACCTAACCAACGAATT
CTCTCGAAGGAGAGAGCTCGACGCTATGCCGAATCCCGAGGAGGCGTACC
GGCGTCGGGGGGCGCATTGGACGTTCGACGGGGAGCGGTTCATGCGGGAG
GTGGCCGAGGCCAAGAAGACCGGTCGGGGCAGCTTCCCGGGGTTCGATCA
CGCCATCGGAGACCCGATCGAGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig84645:567..1241+

>mRNA_H-elongata_contig84645.16067.1 ID=mRNA_H-elongata_contig84645.16067.1|Name=mRNA_H-elongata_contig84645.16067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig84645:567..1241+ (Himanthalia elongata Himel1 dioecious)
ATGGATGGCTTCCACCTTTACCGATGGATGGCTTCCACCTTTACCGGAGA
GAGCTCGACGCTATGCCGAATCCCGAGGAGGCGTACCGGCGTCGGGGGGC
GCATTGGACGTTCGACGGGGAGCGGTTCATGCGGGAGGTGGCCGAGGCCA
AGAAGACCGGTCGGGGCAGCTTCCCGGGGTTCGATCACGCCATCGGAGAC
CCGATCGAGAACGAGAGAGCTCGACGCTATGCCGAATCCCGAGGAGGCGT
ACCGGCGTCGGGGGGCGCATTGGACGTTCGACGGGGAGCGGTTCATGCGG
GAGGTGGCCGAGGCCAAGAAGACCGGTCGGGGCAGCTTCCCGGGGTTCGA
TCACGCCATCGGAGACCCGATCGAGAAC
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