mRNA_H-elongata_contig84642.16066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84642.16066.1
Unique NamemRNA_H-elongata_contig84642.16066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84642.16066.1 vs. uniprot
Match: A0A6H5L4I1_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4I1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.120e-20
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 AIDTAVFSISNLFRPGTVALDIFGDKETSDARRRCQPDSSDTEGQELFTLHLRVAVLYTVVYGGLMGTPSCRDSIEPLMDNISHPLSL 264
            A+D A FS+ ++F    VALDIFGDKETSDARRRCQP   D +G  LF +HL VA LY   Y G    P C D++  LM+    PLS+
Sbjct:   73 ALDAAQFSLGSMFESNGVALDIFGDKETSDARRRCQPADGDEDGAVLFNMHLGVAGLYMAAYVGSEHMPWCTDTVSALMEAYGAPLSM 160
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BLAST of mRNA_H-elongata_contig84642.16066.1 vs. uniprot
Match: D8LLS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 6.540e-16
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 AIDTAVFSISNLFRPGTVALDIFGDKETSDARRRCQPDSSDTEGQELFTLHLRVAVLYTVVYGGLMGTPSCRDSIEPLMDNISHPLS 261
            AI ++ +S+++ F+P  V L+IFGD++TSD RRRC PD+ +T   ELF+LH +VA LY + +  L   P C   I+PLM  + HP+S
Sbjct:   81 AIQSSSWSVASAFQPPPV-LNIFGDRQTSDERRRCYPDTPETI--ELFSLHYKVAALYVLAHAALKAMPFCHAEIDPLMLGLDHPMS 164
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BLAST of mRNA_H-elongata_contig84642.16066.1 vs. uniprot
Match: A0A6H5JTZ2_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTZ2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.140e-14
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:   34 LFRPGTVALDIFGDKETSDARRRCQPDSSDTEGQELFTLHLRVAVLYTVVYGGLMGTPSCRDSIEPLMDNISHPLSL 264
            +F P  VALDIFGDKETSDARRRCQP +   E + +F LHL V+VLY + Y G    P C + I    + +  P+SL
Sbjct:    1 MFEPNGVALDIFGDKETSDARRRCQPATE--EDRVIFDLHLSVSVLYAISYIGWKYMPYCSEQIAAEAEALGGPMSL 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84642.16066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4I1_9PHAE4.120e-2052.27CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D8LLS4_ECTSI6.540e-1645.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ2_9PHAE7.140e-1450.65CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84642contigH-elongata_contig84642:1595..1859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D7G662
EggNOG OGs2DGTT@1,2S5V4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.5975769-CDS-H-elongata_contig84642:1594..18581622931250.5975769-CDS-H-elongata_contig84642:1594..1858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84642 1595..1858 +
1691679759.7992797-CDS-H-elongata_contig84642:1594..18581691679759.7992797-CDS-H-elongata_contig84642:1594..1858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84642 1595..1858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84642.16066.1prot_H-elongata_contig84642.16066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84642 1595..1858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84642.16066.1

>prot_H-elongata_contig84642.16066.1 ID=prot_H-elongata_contig84642.16066.1|Name=mRNA_H-elongata_contig84642.16066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
AIDTAVFSISNLFRPGTVALDIFGDKETSDARRRCQPDSSDTEGQELFTL
HLRVAVLYTVVYGGLMGTPSCRDSIEPLMDNISHPLSL
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mRNA from alignment at H-elongata_contig84642:1595..1859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84642.16066.1 ID=mRNA_H-elongata_contig84642.16066.1|Name=mRNA_H-elongata_contig84642.16066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=265bp|location=Sequence derived from alignment at H-elongata_contig84642:1595..1859+ (Himanthalia elongata Himel1 dioecious)
GCCATCGACACCGCGGTGTTCTCCATTTCCAACCTTTTCCGTCCGGGCAC
CGTCGCCCTCGACATCTTCGGCGACAAAGAGACGTCCGATGCCCGCCGCA
GATGCCAACCCGACTCATCCGACACCGAAGGACAGGAACTCTTCACGCTT
CACCTTCGCGTCGCGGTGCTGTACACCGTCGTATACGGGGGGTTGATGGG
CACGCCTTCCTGCCGAGACTCCATCGAGCCACTGATGGACAATATTAGCC
ACCCTCTCTCTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig84642:1595..1859+

>mRNA_H-elongata_contig84642.16066.1 ID=mRNA_H-elongata_contig84642.16066.1|Name=mRNA_H-elongata_contig84642.16066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig84642:1595..1859+ (Himanthalia elongata Himel1 dioecious)
GCCATCGACACCGCGGTGTTCTCCATTTCCAACCTTTTCCGTCCGGGCAC
CGTCGCCCTCGACATCTTCGGCGACAAAGAGACGTCCGATGCCCGCCGCA
GATGCCAACCCGACTCATCCGACACCGAAGGACAGGAACTCTTCACGCTT
CACCTTCGCGTCGCGGTGCTGTACACCGTCGTATACGGGGGGTTGATGGG
CACGCCTTCCTGCCGAGACTCCATCGAGCCACTGATGGACAATATTAGCC
ACCCTCTCTCTCTAGCCATCGACACCGCGGTGTTCTCCATTTCCAACCTT
TTCCGTCCGGGCACCGTCGCCCTCGACATCTTCGGCGACAAAGAGACGTC
CGATGCCCGCCGCAGATGCCAACCCGACTCATCCGACACCGAAGGACAGG
AACTCTTCACGCTTCACCTTCGCGTCGCGGTGCTGTACACCGTCGTATAC
GGGGGGTTGATGGGCACGCCTTCCTGCCGAGACTCCATCGAGCCACTGAT
GGACAATATTAGCCACCCTCTCTCTCTA
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